Solr Queries

Gene Disease Causal Associations By Taxa

Production Query

Dev Query

species count
Total 10336 (+204)
Homo sapiens 9583 (+186)
Canis lupus familiaris 230 (0)
Bos taurus 120 (0)
Felis catus 62 (0)
Ovis aries 47 (0)
Gallus gallus 41 (0)
Equus caballus 39 (0)
Sus scrofa 38 (0)
Capra hircus 15 (0)
Oryctolagus cuniculus 12 (0)
Mus musculus 11 (0)
Coturnix japonica 9 (0)
Hepacivirus C 7 (+7)
Neovison vison 5 (0)
Equus asinus 5 (0)
Bubalus bubalis 4 (0)
Mesocricetus auratus 4 (0)
NCBITaxon:198806 3 (0)
Human gammaherpesvirus 8 3 (+3)
Vulpes lagopus 3 (0)
Macaca mulatta 3 (0)
Oryzias latipes 3 (0)
Bos grunniens 3 (0)
Macaca fascicularis 2 (0)
Mustela putorius furo 2 (0)
Staphylococcus aureus 2 (+2)
Vulpes vulpes 2 (0)
NCBITaxon:48883 2 (0)
NCBITaxon:32536 2 (0)
Mammuthus primigenius 2 (0)
Onchocerca volvulus 2 (+2)
Meleagris gallopavo 2 (0)
Vaccinia virus WR 2 (+2)
Phoenicopterus ruber 1 (0)
Sciurus carolinensis 1 (0)
Camelus dromedarius 1 (0)
NCBITaxon:61402 1 (0)
NCBITaxon:120794 1 (0)
Hylobates lar 1 (0)
NCBITaxon:68352 1 (0)
Ctenopharyngodon idella 1 (0)
Delphinapterus leucas 1 (0)
Aepyceros melampus 1 (0)
Canis lupus 1 (0)
Peromyscus maniculatus 1 (0)
NCBITaxon:57661 1 (0)
NCBITaxon:118797 1 (0)
NCBITaxon:9579 1 (0)
Balaenoptera acutorostrata 1 (0)
NCBITaxon:9773 1 (0)
Jaagsiekte sheep retrovirus 1 (+1)
Coturnix coturnix 1 (0)
Tursiops truncatus 1 (0)
Panthera tigris 1 (0)
NCBITaxon:338458 1 (0)
NCBITaxon:38666 1 (0)
NCBITaxon:328808 1 (0)
NCBITaxon:37029 1 (0)
NCBITaxon:46844 1 (0)
Macaca fuscata 1 (0)
Astyanax 1 (0)
Rangifer tarandus 1 (0)
NCBITaxon:61406 1 (0)
NCBITaxon:255217 1 (0)
Pan troglodytes 1 (0)
Mycobacterium bovis BCG 1 (+1)
Bos mutus 1 (0)
NCBITaxon:57662 1 (0)
Elephas maximus 1 (0)
NCBITaxon:54059 1 (0)
Sus scrofa domesticus 1 (0)
Peromyscus polionotus 1 (0)
Ursus americanus 1 (0)
NCBITaxon:70340 1 (0)
Cavia porcellus 1 (0)
NCBITaxon:273489 1 (0)
NCBITaxon:34892 1 (0)
NCBITaxon:345164 1 (0)
NCBITaxon:61386 1 (0)
NCBITaxon:9690 1 (0)
Gorilla gorilla 1 (0)
Anas platyrhynchos 1 (0)
NCBITaxon:103584 1 (0)
Canis latrans 1 (0)
Numida meleagris 1 (0)
Oreochromis niloticus 1 (0)
Columba livia 1 (0)
NCBITaxon:61455 1 (0)
NCBITaxon:8523 1 (0)
NCBITaxon:43597 1 (0)
Cebus apella 1 (0)
NCBITaxon:9691 1 (0)
Rattus norvegicus 1 (0)
Panthera tigris tigris 1 (0)
Dromaius novaehollandiae 1 (0)
Human immunodeficiency virus 1 1 (+1)
Symphalangus syndactylus 1 (0)
NCBITaxon:87177 1 (0)
Takifugu rubripes 1 (0)
Other 0 (0)
Mus musculus domesticus 0 (-1)

Gene Disease Non-Causal Associations By Source

Production Query

Dev Query

species count
Total 33808 (+16313)
https://data.monarchinitiative.org/ttl/gwascatalog.ttl 16811 (+16570)
https://data.monarchinitiative.org/ttl/ctd.ttl 16184 (+224)
https://data.monarchinitiative.org/ttl/orphanet.ttl 1188 (+5)
https://data.monarchinitiative.org/ttl/omim.ttl 740 (-42)
https://data.monarchinitiative.org/ttl/kegg.ttl 534 (-76)
https://data.monarchinitiative.org/ttl/clinvar.nt 344 (+344)
https://data.monarchinitiative.org/ttl/coriell.ttl 36 (+1)
https://data.monarchinitiative.org/ttl/udp.ttl 2 (-2)
https://data.monarchinitiative.org/ttl/clinvar.ttl 0 (-388)
Other 0 (0)

Model Disease Associations By Taxa

Production Query

Dev Query

species count
Total 26434 (-34)
Homo sapiens 12021 (+41)
Mus musculus 7856 (+658)
Caenorhabditis elegans 3328 (+291)
Drosophila melanogaster 1207 (-594)
Danio rerio 965 (+57)
Carnivora 684 (0)
Ruminantia 144 (0)
organism 98 (+1)
Felidae 55 (0)
Equidae 34 (0)
sequence_alteration 18 (+18)
Sus 5 (0)
Suidae 5 (0)
Gallus gallus 3 (0)
Bos taurus 3 (0)
NCBITaxon:477815 2 (0)
Other 2 (0)
Bovidae 2 (0)
Mus musculus castaneus 1 (0)
Viridiplantae 1 (0)
Mus musculus musculus 0 (-2)
Mus musculus domesticus 0 (-504)

Gene Anatomy By Taxa

Production Query

Dev Query

source count
Total 1855140 (-3331)
Mus musculus 542958 (+112972)
Homo sapiens 532230 (+4220)
Danio rerio 367207 (-20)
Drosophila melanogaster 197522 (-219)
Rattus norvegicus 142624 (0)
Caenorhabditis elegans 71613 (-95)
Human immunodeficiency virus 1 100 (+100)
Hepacivirus C 80 (+80)
Simian virus 40 40 (+40)
Dengue virus group 40 (+40)
Bacillus cereus ATCC 14579 40 (+40)
Yellow fever virus 40 (+40)
HIV-1 M:C_ETH2220 40 (+40)
Staphylococcus aureus 33 (+33)
NCBITaxon:1392869 20 (+20)
Human alphaherpesvirus 1 20 (+20)
Human herpesvirus 5 strain AD169 20 (+20)
Vaccinia virus WR 20 (+20)
Yersinia pestis 20 (+20)
Human rhinovirus B3 20 (+20)
NCBITaxon:387139 20 (+20)
Human respiratory syncytial virus B 20 (+20)
Mycobacterium tuberculosis H37Rv 20 (+20)
Hepatitis B virus 20 (+20)
Onchocerca volvulus 20 (+20)
Influenza A virus (A/WSN/1933(H1N1)) 20 (+20)
Listeria innocua Clip11262 20 (+20)
Vaccinia virus 20 (+20)
Pseudomonas aeruginosa 20 (+20)
Human respiratory syncytial virus 20 (+20)
Human gammaherpesvirus 8 20 (+20)
Human papillomavirus type 16 20 (+20)
Jaagsiekte sheep retrovirus 20 (+20)
Candida albicans SC5314 20 (+20)
NCBITaxon:1319 20 (+20)
Human alphaherpesvirus 3 20 (+20)
Murine leukemia virus 20 (+20)
NCBITaxon:1086030 20 (+20)
Candida albicans 20 (+20)
Lactobacillus johnsonii NCC 533 20 (+20)
Hepatitis C virus subtype 1b 20 (+20)
Mycobacterium bovis BCG 20 (+20)
NCBITaxon:70865 13 (+13)
Other 0 (0)
Mus musculus domesticus 0 (-121175)

Publication Genotype By Source

Production Query

Dev Query

source count
Total 127930 (-201093)
https://data.monarchinitiative.org/ttl/mgi.ttl 79480 (+79480)
https://data.monarchinitiative.org/ttl/zfin.ttl 28888 (-17)
https://data.monarchinitiative.org/ttl/coriell.ttl 10395 (+95)
https://data.monarchinitiative.org/ttl/go.ttl 9167 (+157)
Other 0 (0)
https://data.monarchinitiative.org/ttl/flybase.ttl 0 (-280808)

Variant Phenotype Associations By Taxa

Production Query

Dev Query

species count
Total 3574241 (+63000)
Homo sapiens 2134051 (+248135)
organism 446655 (-184838)
Mus musculus 413265 (+57993)
Caenorhabditis elegans 193000 (+101939)
Bos taurus 125205 (+7)
Drosophila melanogaster 111499 (-99292)
Danio rerio 93521 (+1466)
Sus scrofa 34559 (0)
Gallus gallus 13529 (+190)
Ovis aries 1519 (+26)
sequence_alteration 1305 (+1305)
Equus caballus 1009 (+2)
Drosophila hydei 644 (+644)
Drosophila subobscura 596 (+596)
Drosophila virilis 592 (+592)
Drosophila ananassae 398 (+398)
Drosophila pseudoobscura pseudoobscura 321 (+321)
Drosophila simulans 279 (+279)
Drosophila willistoni 251 (+251)
Drosophila funebris 228 (+228)
NCBITaxon:40372 206 (+206)
NCBITaxon:7257 156 (+156)
NCBITaxon:30019 142 (+142)
Drosophila immigrans 108 (+108)
NCBITaxon:95109 100 (+100)
NCBITaxon:30033 95 (+95)
Drosophila mauritiana 76 (+76)
NCBITaxon:7246 76 (+76)
NCBITaxon:7300 71 (+71)
NCBITaxon:30042 68 (+68)
Drosophila buzzatii 67 (+67)
Drosophila miranda 65 (+65)
Drosophila paulistorum 60 (+60)
NCBITaxon:76712 52 (+52)
Drosophila littoralis 45 (+45)
Drosophila persimilis 39 (+39)
NCBITaxon:7218 35 (+35)
Drosophila mojavensis 34 (+34)
Drosophila ambigua 28 (+28)
Saccharomyces cerevisiae S288C 23 (0)
NCBITaxon:193351 22 (+22)
Drosophila auraria 18 (+18)
NCBITaxon:125945 18 (+18)
NCBITaxon:7282 14 (+14)
NCBITaxon:7283 13 (+13)
NCBITaxon:64960 11 (+11)
NCBITaxon:42026 10 (+10)
NCBITaxon:46794 10 (+10)
NCBITaxon:161732 9 (+9)
Drosophila sechellia 9 (+9)
NCBITaxon:30036 9 (+9)
Drosophila takahashii 8 (+8)
NCBITaxon:169138 7 (+7)
NCBITaxon:30043 7 (+7)
NCBITaxon:47314 7 (+7)
NCBITaxon:94111 6 (+6)
NCBITaxon:7291 5 (+5)
NCBITaxon:40844 4 (+4)
NCBITaxon:46822 4 (+4)
NCBITaxon:30023 4 (+4)
Drosophila eugracilis 4 (+4)
NCBITaxon:30028 4 (+4)
NCBITaxon:69217 4 (+4)
NCBITaxon:103846 3 (+3)
NCBITaxon:218680 3 (+3)
Drosophila equinoxialis 3 (+3)
NCBITaxon:198721 3 (+3)
NCBITaxon:7252 3 (+3)
Drosophila pseudoobscura bogotana 3 (+3)
NCBITaxon:7271 2 (+2)
Drosophila erecta 2 (+2)
NCBITaxon:141217 2 (+2)
NCBITaxon:30056 2 (+2)
Scaptodrosophila lebanonensis 2 (+2)
NCBITaxon:133981 2 (+2)
Drosophila madeirensis 2 (+2)
NCBITaxon:57910 2 (+2)
NCBITaxon:42062 2 (+2)
NCBITaxon:7297 2 (+2)
NCBITaxon:134002 2 (+2)
NCBITaxon:7270 2 (+2)
NCBITaxon:76946 2 (+2)
NCBITaxon:30029 2 (+2)
NCBITaxon:7279 2 (+2)
Drosophila yakuba 2 (+2)
NCBITaxon:133978 2 (+2)
NCBITaxon:195057 2 (+2)
Drosophila arizonae 2 (+2)
NCBITaxon:7284 1 (+1)
Other 1 (-182)
NCBITaxon:310057 1 (+1)
NCBITaxon:66368 1 (+1)
Drosophila lutescens 1 (+1)
NCBITaxon:7231 1 (+1)
Mus musculus domesticus 0 (-68851)

Variant Disease Associations By Taxa

Production Query

Dev Query

species count
Total 113322 (+8689)
Homo sapiens 112547 (+8725)
organism 737 (-36)
Mus musculus 37 (+16)
Bos taurus 1 (0)
Other 0 (0)
Mus musculus domesticus 0 (-16)

Gene Phenotype Associations By Taxa

Production Query

Dev Query

species count
Total 675178 (-47535)
Mus musculus 212459 (+10621)
Homo sapiens 196654 (+65680)
Caenorhabditis elegans 76789 (+22926)
Saccharomyces cerevisiae S288C 68224 (-6)
Danio rerio 56008 (-661)
Drosophila melanogaster 49114 (-146961)
organism 10484 (+4425)
Rattus norvegicus 494 (+33)
Canis lupus familiaris 460 (-16)
Drosophila hydei 452 (+452)
Drosophila subobscura 373 (+373)
Drosophila virilis 337 (+337)
Drosophila ananassae 246 (+246)
Drosophila simulans 204 (+204)
Drosophila pseudoobscura pseudoobscura 203 (+203)
Drosophila willistoni 186 (+186)
Bos taurus 160 (-3)
NCBITaxon:7257 153 (+153)
Drosophila funebris 132 (+132)
Vaccinia virus WR 131 (+131)
Felis catus 128 (-4)
NCBITaxon:30019 124 (+124)
NCBITaxon:40372 118 (+118)
NCBITaxon:95109 82 (+82)
NCBITaxon:30033 82 (+82)
Staphylococcus aureus 76 (+76)
Drosophila immigrans 72 (+72)
NCBITaxon:7300 69 (+69)
Hepacivirus C 63 (+63)
NCBITaxon:7246 63 (+63)
Human immunodeficiency virus 1 60 (+60)
NCBITaxon:30042 56 (+56)
Ovis aries 55 (-2)
Drosophila buzzatii 55 (+55)
Drosophila mauritiana 52 (+52)
Onchocerca volvulus 50 (+50)
Drosophila paulistorum 49 (+49)
Drosophila miranda 43 (+43)
Drosophila littoralis 34 (+34)
NCBITaxon:7218 33 (+33)
Equus caballus 31 (0)
Sus scrofa 30 (-1)
Human gammaherpesvirus 8 30 (+30)
Drosophila ambigua 27 (+27)
NCBITaxon:193351 22 (+22)
Gallus gallus 19 (0)
Phoenicopterus ruber 17 (0)
Capra hircus 17 (-1)
NCBITaxon:125945 15 (+15)
NCBITaxon:76712 14 (+14)
Drosophila persimilis 14 (+14)
NCBITaxon:7282 13 (+13)
NCBITaxon:7283 13 (+13)
Drosophila mojavensis 12 (+12)
Drosophila auraria 11 (+11)
NCBITaxon:64960 11 (+11)
Jaagsiekte sheep retrovirus 10 (+10)
Oryctolagus cuniculus 10 (0)
NCBITaxon:46794 10 (+10)
Mustela putorius furo 10 (0)
Drosophila sechellia 9 (+9)
Vaccinia virus 9 (+9)
Yellow fever virus 8 (+8)
NCBITaxon:169138 7 (+7)
NCBITaxon:30043 7 (+7)
Human rhinovirus B3 6 (+6)
NCBITaxon:161732 6 (+6)
NCBITaxon:42026 6 (+6)
Human herpesvirus 5 strain AD169 6 (+6)
NCBITaxon:47314 6 (+6)
Simian virus 40 6 (+6)
Hepatitis B virus 5 (+5)
NCBITaxon:40844 4 (+4)
NCBITaxon:46822 4 (+4)
Neovison vison 4 (0)
Macaca mulatta 4 (0)
NCBITaxon:69217 4 (+4)
NCBITaxon:30028 4 (+4)
Influenza A virus (A/WSN/1933(H1N1)) 3 (+3)
Drosophila takahashii 3 (+3)
Mesocricetus auratus 3 (0)
Drosophila equinoxialis 3 (+3)
NCBITaxon:7252 3 (+3)
Oryzias latipes 3 (-1)
NCBITaxon:30036 3 (+3)
NCBITaxon:94111 3 (+3)
NCBITaxon:198721 3 (+3)
Meleagris gallopavo 3 (0)
NCBITaxon:218680 3 (+3)
Drosophila pseudoobscura bogotana 3 (+3)
NCBITaxon:141217 2 (+2)
Vulpes vulpes 2 (0)
Bubalus bubalis 2 (0)
NCBITaxon:30029 2 (+2)
Drosophila madeirensis 2 (+2)
NCBITaxon:30023 2 (+2)
NCBITaxon:133981 2 (+2)
Drosophila eugracilis 2 (+2)
Drosophila arizonae 2 (+2)
NCBITaxon:134002 2 (+2)
NCBITaxon:7270 2 (+2)
NCBITaxon:7291 2 (+2)
NCBITaxon:76946 2 (+2)
Scaptodrosophila lebanonensis 2 (+2)
NCBITaxon:133978 2 (+2)
NCBITaxon:195057 2 (+2)
NCBITaxon:42062 2 (+2)
NCBITaxon:7271 2 (+2)
Human papillomavirus type 16 2 (+2)
Drosophila erecta 2 (+2)
NCBITaxon:7231 1 (+1)
NCBITaxon:7284 1 (+1)
NCBITaxon:30056 1 (+1)
NCBITaxon:68352 1 (0)
NCBITaxon:310057 1 (+1)
Ursus americanus 1 (0)
NCBITaxon:61402 1 (0)
Numida meleagris 1 (0)
NCBITaxon:43597 1 (0)
Vulpes lagopus 1 (0)
NCBITaxon:1392869 1 (+1)
NCBITaxon:103846 1 (+1)
NCBITaxon:27706 1 (0)
Hepatitis C virus subtype 1b 1 (+1)
Panthera tigris tigris 1 (0)
NCBITaxon:57910 1 (+1)
Dengue virus group 1 (+1)
NCBITaxon:7297 1 (+1)
Mycobacterium bovis BCG 1 (+1)
Mammuthus primigenius 1 (0)
NCBITaxon:66368 1 (+1)
NCBITaxon:7279 1 (+1)
Coturnix japonica 1 (0)
Drosophila yakuba 1 (+1)
NCBITaxon:32536 1 (0)
NCBITaxon:70340 1 (0)
NCBITaxon:38666 1 (0)
NCBITaxon:9690 1 (0)
Sciurus carolinensis 1 (0)
Drosophila lutescens 1 (+1)
Human alphaherpesvirus 3 1 (+1)
Peromyscus polionotus 1 (0)
Bos grunniens 1 (0)
NCBITaxon:87177 1 (0)
Other 0 (0)
Mus musculus domesticus 0 (-7540)

Gene Phenotype Associations By Source

Production Query

Dev Query

source count
Total 675178 (-47535)
https://data.monarchinitiative.org/ttl/mgi_slim.ttl 209205 (+3435)
https://data.monarchinitiative.org/ttl/hpoa.ttl 148647 (+17693)
https://data.monarchinitiative.org/ttl/orphanet.ttl 111894 (+14108)
https://data.monarchinitiative.org/ttl/clinvar.nt 96592 (+96592)
https://data.monarchinitiative.org/ttl/omim.ttl 86440 (+7846)
https://data.monarchinitiative.org/ttl/wormbase.ttl 76789 (+23072)
https://data.monarchinitiative.org/ttl/sgd.ttl 68224 (0)
https://data.monarchinitiative.org/ttl/zfinslim.ttl 61902 (+8468)
https://data.monarchinitiative.org/ttl/flybase.ttl 57210 (-138865)
https://data.monarchinitiative.org/ttl/gwascatalog.ttl 48988 (+48983)
https://data.monarchinitiative.org/ttl/impc.ttl 17417 (0)
https://data.monarchinitiative.org/ttl/mgi.ttl 16087 (0)
https://data.monarchinitiative.org/ttl/coriell.ttl 7151 (+286)
https://data.monarchinitiative.org/ttl/omia.ttl 981 (-28)
https://data.monarchinitiative.org/ttl/monarch.ttl 960 (-28)
https://data.monarchinitiative.org/ttl/rgd.ttl 489 (+33)
https://data.monarchinitiative.org/ttl/go.ttl 0 (-9775)
https://data.monarchinitiative.org/ttl/mmrrc.ttl 0 (-5114)
Other 0 (0)
https://data.monarchinitiative.org/ttl/zfin.ttl 0 (-8943)
https://data.monarchinitiative.org/ttl/clinvar.ttl 0 (-89034)

Gene Disease Non-causal Associations By Taxa

Production Query

Dev Query

species count
Total 33808 (+16313)
Homo sapiens 33309 (+16131)
Mus musculus 215 (+10)
Rattus norvegicus 34 (+2)
Drosophila melanogaster 33 (-1)
Human rhinovirus B3 29 (+29)
Staphylococcus aureus 24 (+24)
Danio rerio 24 (0)
Simian virus 40 23 (+23)
Hepacivirus C 20 (+20)
Human immunodeficiency virus 1 13 (+13)
Human gammaherpesvirus 8 11 (+11)
Lactobacillus johnsonii NCC 533 7 (+7)
Candida albicans SC5314 6 (+6)
Onchocerca volvulus 6 (+6)
Mycobacterium bovis BCG 6 (+6)
Vaccinia virus 5 (+5)
Sus scrofa 5 (0)
Human alphaherpesvirus 3 5 (+5)
Yellow fever virus 4 (+4)
Caenorhabditis elegans 4 (0)
Bos taurus 4 (0)
HIV-1 M:C_ETH2220 3 (+3)
NCBITaxon:387139 3 (+3)
Gallus gallus 2 (0)
Xenopus (Silurana) tropicalis 2 (+1)
Human herpesvirus 5 strain AD169 2 (+2)
Hepatitis B virus 2 (+2)
Influenza A virus (A/WSN/1933(H1N1)) 1 (+1)
Listeria innocua Clip11262 1 (+1)
NCBITaxon:1392869 1 (+1)
Human papillomavirus type 16 1 (+1)
Vaccinia virus WR 1 (+1)
Bacillus cereus ATCC 14579 1 (+1)
Human respiratory syncytial virus 1 (+1)
Canis lupus familiaris 0 (-1)
Other 0 (0)
Mus musculus domesticus 0 (-5)

Gene Pathway By Source

Production Query

Dev Query

source count
Total 306792 (-9881)
https://data.monarchinitiative.org/ttl/reactome.ttl 204004 (-10017)
https://data.monarchinitiative.org/ttl/ctd.ttl 135636 (-31)
Other 0 (0)
https://data.monarchinitiative.org/ttl/ensembl.ttl 0 (-695)

Case Genotype By Source

Production Query

Dev Query

source count
Total 3840 (+17)
https://data.monarchinitiative.org/ttl/coriell.ttl 3807 (+17)
https://data.monarchinitiative.org/ttl/udp.ttl 33 (0)
Other 0 (0)

Gene Interactions By Subject Taxa

Production Query

Dev Query

source count
Total 3764168 (+114054)
Homo sapiens 1413732 (+79469)
Mus musculus 729126 (+3708)
Rattus norvegicus 484927 (-2)
Drosophila melanogaster 470895 (+889)
Caenorhabditis elegans 365031 (+23552)
Danio rerio 292821 (-122)
Simian virus 40 901 (+901)
HIV-1 M:C_ETH2220 879 (+879)
Yellow fever virus 763 (+763)
Human immunodeficiency virus 1 675 (+675)
Hepacivirus C 599 (+599)
NCBITaxon:1319 463 (+463)
Candida albicans SC5314 378 (+378)
Vaccinia virus WR 370 (+370)
Human rhinovirus B3 322 (+322)
Dengue virus group 310 (+310)
Staphylococcus aureus 297 (+297)
Human gammaherpesvirus 8 236 (+236)
Influenza A virus (A/WSN/1933(H1N1)) 189 (+189)
Vaccinia virus 184 (+184)
Onchocerca volvulus 147 (+147)
Human alphaherpesvirus 3 121 (+121)
Lactobacillus johnsonii NCC 533 100 (+100)
Bacillus cereus ATCC 14579 95 (+95)
Human respiratory syncytial virus B 92 (+92)
Human alphaherpesvirus 1 91 (+91)
NCBITaxon:387139 57 (+57)
Hepatitis C virus subtype 1b 48 (+48)
Pseudomonas aeruginosa 42 (+42)
Mycobacterium tuberculosis H37Rv 36 (+36)
Yersinia pestis 35 (+35)
NCBITaxon:1086030 33 (+33)
Other 31 (+5)
Candida albicans 30 (+30)
Human respiratory syncytial virus 20 (+20)
Mycobacterium bovis BCG 16 (+16)
NCBITaxon:70865 14 (+14)
Jaagsiekte sheep retrovirus 14 (+14)
Murine leukemia virus 14 (+14)
Human herpesvirus 5 strain AD169 10 (+10)
Human papillomavirus type 16 10 (+10)
Hepatitis B virus 7 (+7)
NCBITaxon:1392869 4 (+4)
Listeria innocua Clip11262 3 (+3)
organism 0 (-24)
Mus musculus domesticus 0 (-1026)

Variant Genotype Associations By Source

Production Query

Dev Query

source count
Total 457174 (-1228395)
https://data.monarchinitiative.org/ttl/mgi.ttl 245205 (-25974)
https://data.monarchinitiative.org/ttl/zfin.ttl 161213 (+7851)
https://data.monarchinitiative.org/ttl/impc.ttl 70108 (-1836)
https://data.monarchinitiative.org/ttl/coriell.ttl 7276 (+10)
https://data.monarchinitiative.org/ttl/udp.ttl 112 (0)
https://data.monarchinitiative.org/ttl/mmrrc.ttl 0 (-368174)
Other 0 (0)
https://data.monarchinitiative.org/ttl/flybase.ttl 0 (-873495)

Variant Genotype Associations By Taxa

Production Query

Dev Query

species count
Total 457174 (-1228395)
Mus musculus 283028 (-362923)
Danio rerio 161213 (+7851)
organism 7094 (-34)
Homo sapiens 4533 (+8)
sequence_alteration 1235 (+1235)
NCBITaxon:10102 20 (0)
Mus musculus molossinus 15 (0)
Mus musculus bactrianus 7 (0)
Mus spretus 6 (0)
Mus musculus musculus 5 (-6)
Mus 4 (0)
Mus musculus castaneus 4 (0)
Rattus norvegicus 4 (0)
Macaca mulatta 2 (0)
Cricetulus griseus 1 (0)
Saguinus labiatus 1 (0)
Plecturocebus moloch 1 (0)
Bos taurus 1 (0)
Other 0 (0)
Drosophila melanogaster 0 (-873495)
Mus musculus domesticus 0 (-1031)

Case Disease By Source

Production Query

Dev Query

source count
Total 11337 (+30)
https://data.monarchinitiative.org/ttl/coriell.ttl 11299 (+30)
https://data.monarchinitiative.org/ttl/udp.ttl 38 (0)
Other 0 (0)

Publication Phenotype By Source

Production Query

Dev Query

source count
Total 5094133 (-1188715)
https://data.monarchinitiative.org/ttl/ncbigene.ttl 4174612 (+129576)
https://data.monarchinitiative.org/ttl/go.ttl 1038367 (+229037)
https://data.monarchinitiative.org/ttl/biogrid.ttl 338807 (+21036)
https://data.monarchinitiative.org/ttl/flybase.ttl 96829 (-1892315)
https://data.monarchinitiative.org/ttl/sgd.ttl 86732 (0)
https://data.monarchinitiative.org/ttl/zfin.ttl 70503 (+168)
https://data.monarchinitiative.org/ttl/gwascatalog.ttl 61372 (+60463)
https://data.monarchinitiative.org/ttl/mgi.ttl 56357 (+45187)
https://data.monarchinitiative.org/ttl/clinvar.nt 52824 (+52824)
https://data.monarchinitiative.org/ttl/wormbase.ttl 37087 (+8560)
https://data.monarchinitiative.org/ttl/mgi_slim.ttl 31931 (+221)
https://data.monarchinitiative.org/ttl/omim.ttl 28489 (+876)
https://data.monarchinitiative.org/ttl/hgnc.ttl 28025 (+403)
https://data.monarchinitiative.org/ttl/ctd.ttl 24111 (+428)
https://data.monarchinitiative.org/ttl/zfinslim.ttl 13191 (+600)
https://data.monarchinitiative.org/ttl/impc.ttl 4614 (+4475)
https://data.monarchinitiative.org/ttl/animalqtldb.ttl 4613 (0)
https://data.monarchinitiative.org/ttl/rgd.ttl 184 (+11)
https://data.monarchinitiative.org/ttl/hpoa.ttl 4 (0)
https://data.monarchinitiative.org/ttl/mmrrc.ttl 0 (-2237)
Other 0 (0)
https://data.monarchinitiative.org/ttl/clinvar.ttl 0 (-51789)

Case Variant By Source

Production Query

Dev Query

source count
Total 4408 (+6)
https://data.monarchinitiative.org/ttl/coriell.ttl 4296 (+6)
https://data.monarchinitiative.org/ttl/udp.ttl 112 (0)
Other 0 (0)

Pathway Phenotype By Source

Production Query

Dev Query

source count
Total 96966 (+1264)
https://data.monarchinitiative.org/ttl/hpoa.ttl 89014 (+2804)
https://data.monarchinitiative.org/ttl/coriell.ttl 89014 (+2804)
https://data.monarchinitiative.org/ttl/omim.ttl 88945 (+2735)
https://data.monarchinitiative.org/ttl/ctd.ttl 86894 (+2726)
https://data.monarchinitiative.org/ttl/reactome.ttl 33356 (-529)
https://data.monarchinitiative.org/ttl/animalqtldb.ttl 7952 (-1540)
https://data.monarchinitiative.org/ttl/gwascatalog.ttl 7493 (+7493)
https://data.monarchinitiative.org/ttl/orphanet.ttl 884 (+468)
Other 0 (0)

Publication Model By Source

Production Query

Dev Query

source count
Total 48691 (+30213)
https://data.monarchinitiative.org/ttl/wormbase.ttl 15529 (+15278)
https://data.monarchinitiative.org/ttl/mgi.ttl 14887 (+12881)
https://data.monarchinitiative.org/ttl/go.ttl 12752 (+11679)
https://data.monarchinitiative.org/ttl/coriell.ttl 8639 (+51)
https://data.monarchinitiative.org/ttl/ncbigene.ttl 8024 (+7898)
https://data.monarchinitiative.org/ttl/flybase.ttl 4098 (+1667)
https://data.monarchinitiative.org/ttl/zfin.ttl 2903 (+336)
https://data.monarchinitiative.org/ttl/omia.ttl 2635 (0)
https://data.monarchinitiative.org/ttl/biogrid.ttl 957 (+957)
https://data.monarchinitiative.org/ttl/mgi_slim.ttl 781 (+24)
https://data.monarchinitiative.org/ttl/ctd.ttl 3 (+3)
https://data.monarchinitiative.org/ttl/mmrrc.ttl 0 (-98)
Other 0 (0)

Case Model By Source

Production Query

Dev Query

source count
https://data.monarchinitiative.org/ttl/coriell.ttl 29866 (+59)
Total 29866 (+59)
Other 0 (0)

Gene Function By Taxa

Production Query

Dev Query

source count
Total 1893465 (+430898)
Mus musculus 341555 (+5406)
Homo sapiens 314364 (+843)
Rattus norvegicus 294395 (+3348)
Danio rerio 171877 (-3436)
Sus scrofa 137574 (+116059)
Gallus gallus 123144 (+106974)
Bos taurus 121784 (+100664)
Canis lupus familiaris 116201 (+96039)
Caenorhabditis elegans 101391 (+5353)
Drosophila melanogaster 100344 (+602)
Saccharomyces cerevisiae S288C 68899 (+168)
Human immunodeficiency virus 1 238 (+238)
Hepacivirus C 171 (+171)
Simian virus 40 152 (+152)
HIV-1 M:C_ETH2220 138 (+138)
Vaccinia virus 96 (+96)
Human gammaherpesvirus 8 96 (+96)
Dengue virus group 91 (+91)
Staphylococcus aureus 80 (+80)
Human rhinovirus B3 78 (+78)
Lactobacillus johnsonii NCC 533 71 (+71)
NCBITaxon:1319 57 (+57)
Yellow fever virus 51 (+51)
Bacillus cereus ATCC 14579 48 (+48)
Onchocerca volvulus 42 (+42)
Candida albicans SC5314 42 (+42)
Jaagsiekte sheep retrovirus 40 (+40)
Mycobacterium bovis BCG 40 (+40)
Vaccinia virus WR 39 (+39)
Hepatitis B virus 36 (+36)
NCBITaxon:387139 29 (+29)
NCBITaxon:1086030 29 (+29)
Human alphaherpesvirus 3 27 (+27)
Mycobacterium tuberculosis H37Rv 24 (+24)
Influenza A virus (A/WSN/1933(H1N1)) 23 (+23)
Human alphaherpesvirus 1 21 (+21)
Human herpesvirus 5 strain AD169 21 (+21)
Pseudomonas aeruginosa 21 (+21)
Listeria innocua Clip11262 19 (+19)
Hepatitis C virus subtype 1b 18 (+18)
Yersinia pestis 16 (+16)
Human respiratory syncytial virus 16 (+16)
Murine leukemia virus 16 (+16)
Human respiratory syncytial virus B 13 (+13)
NCBITaxon:70865 11 (+11)
Human papillomavirus type 16 10 (+10)
Candida albicans 9 (+9)
NCBITaxon:1392869 8 (+8)
Other 0 (0)
organism 0 (-878)
Mus musculus domesticus 0 (-2181)

Variant Disease Associations By Source

Production Query

Dev Query

source count
Total 113322 (+8689)
https://data.monarchinitiative.org/ttl/clinvar.nt 77731 (+77731)
https://data.monarchinitiative.org/ttl/gwascatalog.ttl 33331 (+4607)
https://data.monarchinitiative.org/ttl/coriell.ttl 1028 (+3)
https://data.monarchinitiative.org/ttl/omim.ttl 1011 (-25)
https://data.monarchinitiative.org/ttl/udp.ttl 110 (0)
https://data.monarchinitiative.org/ttl/ctd.ttl 43 (0)
https://data.monarchinitiative.org/ttl/hpoa.ttl 35 (+35)
https://data.monarchinitiative.org/ttl/mgi.ttl 30 (0)
https://data.monarchinitiative.org/ttl/orphanet.ttl 3 (0)
https://data.monarchinitiative.org/ttl/mgi_slim.ttl 3 (0)
https://data.monarchinitiative.org/ttl/impc.ttl 1 (0)
https://data.monarchinitiative.org/ttl/clinvar.ttl 0 (-73667)
Other 0 (0)

Gene Disease Causal Associations By Source

Production Query

Dev Query

species count
Total 10336 (+204)
https://data.monarchinitiative.org/ttl/orphanet.ttl 6124 (+89)
https://data.monarchinitiative.org/ttl/clinvar.nt 5588 (+5588)
https://data.monarchinitiative.org/ttl/kegg.ttl 5307 (-1)
https://data.monarchinitiative.org/ttl/omim.ttl 5228 (-6)
https://data.monarchinitiative.org/ttl/ctd.ttl 4921 (-5)
https://data.monarchinitiative.org/ttl/omia.ttl 725 (0)
https://data.monarchinitiative.org/ttl/mgi.ttl 10 (-1)
https://data.monarchinitiative.org/ttl/gwascatalog.ttl 8 (+7)
https://data.monarchinitiative.org/ttl/mgi_slim.ttl 7 (+1)
https://data.monarchinitiative.org/ttl/impc.ttl 1 (0)
https://data.monarchinitiative.org/ttl/mmrrc.ttl 0 (-3)
https://data.monarchinitiative.org/ttl/clinvar.ttl 0 (-5512)
Other 0 (0)

Model Disease Associations By Source

Production Query

Dev Query

source count
Total 26434 (-34)
https://data.monarchinitiative.org/ttl/coriell.ttl 12024 (+41)
https://data.monarchinitiative.org/ttl/mgi.ttl 7975 (+171)
https://data.monarchinitiative.org/ttl/wormbase.ttl 3328 (+291)
https://data.monarchinitiative.org/ttl/flybase.ttl 1207 (-594)
https://data.monarchinitiative.org/ttl/zfin.ttl 967 (+57)
https://data.monarchinitiative.org/ttl/omia.ttl 933 (0)
Other 0 (0)

Publication Gene By Source

Production Query

Dev Query

source count
Total 5094133 (-1188715)
https://data.monarchinitiative.org/ttl/ncbigene.ttl 4174612 (+129576)
https://data.monarchinitiative.org/ttl/go.ttl 1038367 (+229037)
https://data.monarchinitiative.org/ttl/biogrid.ttl 338807 (+21036)
https://data.monarchinitiative.org/ttl/flybase.ttl 96829 (-1892315)
https://data.monarchinitiative.org/ttl/sgd.ttl 86732 (0)
https://data.monarchinitiative.org/ttl/zfin.ttl 70503 (+168)
https://data.monarchinitiative.org/ttl/gwascatalog.ttl 61372 (+60463)
https://data.monarchinitiative.org/ttl/mgi.ttl 56357 (+45187)
https://data.monarchinitiative.org/ttl/clinvar.nt 52824 (+52824)
https://data.monarchinitiative.org/ttl/wormbase.ttl 37087 (+8560)
https://data.monarchinitiative.org/ttl/mgi_slim.ttl 31931 (+221)
https://data.monarchinitiative.org/ttl/omim.ttl 28489 (+876)
https://data.monarchinitiative.org/ttl/hgnc.ttl 28025 (+403)
https://data.monarchinitiative.org/ttl/ctd.ttl 24111 (+428)
https://data.monarchinitiative.org/ttl/zfinslim.ttl 13191 (+600)
https://data.monarchinitiative.org/ttl/impc.ttl 4614 (+4475)
https://data.monarchinitiative.org/ttl/animalqtldb.ttl 4613 (0)
https://data.monarchinitiative.org/ttl/rgd.ttl 184 (+11)
https://data.monarchinitiative.org/ttl/hpoa.ttl 4 (0)
https://data.monarchinitiative.org/ttl/mmrrc.ttl 0 (-2237)
Other 0 (0)
https://data.monarchinitiative.org/ttl/clinvar.ttl 0 (-51789)

Genotype Phenotype Associations By Source

Production Query

Dev Query

source count
Total 560622 (-400490)
https://data.monarchinitiative.org/ttl/mgi.ttl 338521 (+4853)
https://data.monarchinitiative.org/ttl/zfin.ttl 107131 (+17201)
https://data.monarchinitiative.org/ttl/coriell.ttl 75564 (+1160)
https://data.monarchinitiative.org/ttl/hpoa.ttl 75561 (+1160)
https://data.monarchinitiative.org/ttl/impc.ttl 28433 (0)
https://data.monarchinitiative.org/ttl/mpd.ttl 10963 (+578)
https://data.monarchinitiative.org/ttl/mgi_slim.ttl 10 (0)
https://data.monarchinitiative.org/ttl/go.ttl 0 (-12006)
Other 0 (0)
https://data.monarchinitiative.org/ttl/flybase.ttl 0 (-412276)

Publication Variant By Source

Production Query

Dev Query

source count
Total 5409688 (-2741799)
https://data.monarchinitiative.org/ttl/ncbigene.ttl 4299396 (+130528)
https://data.monarchinitiative.org/ttl/animalqtldb.ttl 250257 (+785)
https://data.monarchinitiative.org/ttl/mgi.ttl 155924 (+155920)
https://data.monarchinitiative.org/ttl/clinvar.nt 155276 (+155276)
https://data.monarchinitiative.org/ttl/flybase.ttl 151798 (-3531815)
https://data.monarchinitiative.org/ttl/gwascatalog.ttl 115241 (+33279)
https://data.monarchinitiative.org/ttl/wormbase.ttl 107268 (+43753)
https://data.monarchinitiative.org/ttl/zfin.ttl 69249 (+1299)
https://data.monarchinitiative.org/ttl/omim.ttl 43518 (+694)
https://data.monarchinitiative.org/ttl/coriell.ttl 38373 (+260)
https://data.monarchinitiative.org/ttl/hgnc.ttl 32415 (+570)
https://data.monarchinitiative.org/ttl/go.ttl 29249 (+932)
https://data.monarchinitiative.org/ttl/mgi_slim.ttl 7617 (+67)
https://data.monarchinitiative.org/ttl/kegg.ttl 6192 (+145)
https://data.monarchinitiative.org/ttl/omia.ttl 5191 (0)
https://data.monarchinitiative.org/ttl/impc.ttl 4580 (+4580)
https://data.monarchinitiative.org/ttl/ctd.ttl 1399 (+1359)
https://data.monarchinitiative.org/ttl/biogrid.ttl 582 (+62)
https://data.monarchinitiative.org/ttl/hpoa.ttl 120 (+120)
https://data.monarchinitiative.org/ttl/sgd.ttl 29 (0)
https://data.monarchinitiative.org/ttl/mmrrc.ttl 0 (-1625)
Other 0 (0)
https://data.monarchinitiative.org/ttl/clinvar.ttl 0 (-149825)

Publication Disease By Source

Production Query

Dev Query

source count
Total 294110 (+57562)
https://data.monarchinitiative.org/ttl/ctd.ttl 98954 (+452)
https://data.monarchinitiative.org/ttl/zfin.ttl 82208 (+12902)
https://data.monarchinitiative.org/ttl/clinvar.nt 48917 (+48917)
https://data.monarchinitiative.org/ttl/wormbase.ttl 24885 (+24507)
https://data.monarchinitiative.org/ttl/go.ttl 20101 (+18869)
https://data.monarchinitiative.org/ttl/ncbigene.ttl 15283 (+15161)
https://data.monarchinitiative.org/ttl/mgi.ttl 14110 (+11986)
https://data.monarchinitiative.org/ttl/omia.ttl 13765 (0)
https://data.monarchinitiative.org/ttl/flybase.ttl 3857 (+1571)
https://data.monarchinitiative.org/ttl/coriell.ttl 3842 (+25)
https://data.monarchinitiative.org/ttl/gwascatalog.ttl 2328 (+196)
https://data.monarchinitiative.org/ttl/biogrid.ttl 1692 (+1692)
https://data.monarchinitiative.org/ttl/hpoa.ttl 1463 (+273)
https://data.monarchinitiative.org/ttl/mgi_slim.ttl 751 (+24)
https://data.monarchinitiative.org/ttl/hgnc.ttl 425 (+424)
https://data.monarchinitiative.org/ttl/monarch.ttl 184 (0)
https://data.monarchinitiative.org/ttl/mmrrc.ttl 0 (-100)
https://data.monarchinitiative.org/ttl/clinvar.ttl 0 (-44539)
Other 0 (0)

Relations

Production Query

Dev Query

relation count
Total 34723836 (-7716538)
is_about 8569182 (+407554)
has phenotype 4700014 (-443836)
interacts with 3673000 (+49116)
in paralogy relationship with 2916876 (+129946)
Source 2691537 (+97275)
in 1 to 1 orthology relationship with 2552561 (+562951)
in orthology relationship with 2106369 (+394941)
expressed in 1855140 (-3331)
involved_in 1550111 (+446356)
is_allele_of 828103 (-193589)
Other 765392 (-4126122)
is part of 470173 (+113358)
enables 416666 (+97996)
has_affected_feature 407024 (+249272)
in xenology relationship with 299217 (+5984)
contributes to condition 196563 (+165493)
is marker for 140577 (+538)
mentions 104793 (-4585900)
targets_gene 66681 (-108812)
is_expression_variant_of 64214 (-107054)
colocalizes with 60483 (-22773)
pathogenic_for_condition 58455 (+3158)
is_reference_allele_of 57913 (-224)
is model of 37733 (-4)
has_genotype 35270 (-712541)
genetically interacts with 30685 (+4455)
derives_from 29866 (+59)
likely_pathogenic_for_condition 19594 (+920)
causes condition 10497 (-337)
sequence_derives_from 8557 (-141571)
is causal susceptibility factor for 459 (+459)
contributes to 75 (-276)
disease has basis in feature 54 (+1)
is_variant_allele_of 2 (0)

Gene Interactions By Source

Production Query

Dev Query

source count
Total 3764168 (+114054)
https://data.monarchinitiative.org/ttl/string.ttl 2981774 (+1770)
https://data.monarchinitiative.org/ttl/biogrid.ttl 931462 (+154658)
Other 0 (0)

Gene Variant Associations By Source

Production Query

Dev Query

source count
Total 1432494 (-301978)
https://data.monarchinitiative.org/ttl/mgi.ttl 838616 (+216)
https://data.monarchinitiative.org/ttl/flybase.ttl 192674 (-336480)
https://data.monarchinitiative.org/ttl/clinvar.nt 129318 (+129318)
https://data.monarchinitiative.org/ttl/wormbase.ttl 116276 (+305)
https://data.monarchinitiative.org/ttl/gwascatalog.ttl 61522 (+61522)
https://data.monarchinitiative.org/ttl/zfin.ttl 41213 (+1452)
https://data.monarchinitiative.org/ttl/omim.ttl 28013 (+538)
https://data.monarchinitiative.org/ttl/animalqtldb.ttl 23510 (0)
https://data.monarchinitiative.org/ttl/impc.ttl 12948 (0)
https://data.monarchinitiative.org/ttl/go.ttl 5111 (+38)
https://data.monarchinitiative.org/ttl/udp.ttl 0 (-3)
https://data.monarchinitiative.org/ttl/mmrrc.ttl 0 (-47448)
Other 0 (0)
https://data.monarchinitiative.org/ttl/clinvar.ttl 0 (-134239)

Variant Phenotype Associations By Source

Production Query

Dev Query

source count
Total 3574241 (+63000)
https://data.monarchinitiative.org/ttl/hpoa.ttl 2039512 (+151038)
https://data.monarchinitiative.org/ttl/clinvar.nt 1954732 (+1954732)
https://data.monarchinitiative.org/ttl/mgi.ttl 735465 (-3090)
https://data.monarchinitiative.org/ttl/animalqtldb.ttl 213937 (+225)
https://data.monarchinitiative.org/ttl/wormbase.ttl 193000 (+72973)
https://data.monarchinitiative.org/ttl/gwascatalog.ttl 168662 (+103389)
https://data.monarchinitiative.org/ttl/zfin.ttl 164429 (+24216)
https://data.monarchinitiative.org/ttl/flybase.ttl 116655 (-252958)
https://data.monarchinitiative.org/ttl/impc.ttl 58252 (+242)
https://data.monarchinitiative.org/ttl/mgi_slim.ttl 33610 (+512)
https://data.monarchinitiative.org/ttl/omim.ttl 8264 (+218)
https://data.monarchinitiative.org/ttl/ctd.ttl 560 (0)
https://data.monarchinitiative.org/ttl/sgd.ttl 23 (0)
https://data.monarchinitiative.org/ttl/orphanet.ttl 23 (0)
https://data.monarchinitiative.org/ttl/coriell.ttl 3 (0)
https://data.monarchinitiative.org/ttl/go.ttl 0 (-50354)
Other 0 (0)
https://data.monarchinitiative.org/ttl/clinvar.ttl 0 (-1816735)

Case Phenotype By Source

Production Query

Dev Query

source count
Total 1085 (0)
https://data.monarchinitiative.org/ttl/udp.ttl 1076 (0)
https://data.monarchinitiative.org/ttl/coriell.ttl 9 (0)
Other 0 (0)

Disease Phenotype Associations By Source

Production Query

Dev Query

species count
Total 155914 (+9894)
https://data.monarchinitiative.org/ttl/hpoa.ttl 153871 (+9929)
https://data.monarchinitiative.org/ttl/monarch.ttl 1768 (-36)
https://data.monarchinitiative.org/ttl/omia.ttl 221 (0)
https://data.monarchinitiative.org/ttl/omim.ttl 2 (+2)
Other 0 (0)

Gene Variant Associations By Taxa

Production Query

Dev Query

species count
Total 1432494 (-301978)
Mus musculus 836679 (+10858)
Homo sapiens 221034 (+50513)
Drosophila melanogaster 181505 (-288902)
Caenorhabditis elegans 116437 (+284)
Danio rerio 39099 (+1461)
Bos taurus 16962 (-62)
organism 9693 (+5836)
Sus scrofa 3353 (-27)
Gallus gallus 1687 (-25)
Drosophila ananassae 601 (-10)
Drosophila virilis 571 (-6)
Drosophila subobscura 536 (0)
Drosophila hydei 523 (-15)
Drosophila simulans 433 (-6)
Drosophila pseudoobscura pseudoobscura 330 (0)
Equus caballus 235 (-4)
Drosophila willistoni 206 (0)
Rattus norvegicus 180 (-76)
Drosophila funebris 177 (-2)
NCBITaxon:40372 149 (0)
NCBITaxon:30033 123 (0)
NCBITaxon:7257 122 (0)
Drosophila mauritiana 122 (0)
Drosophila buzzatii 121 (-2)
NCBITaxon:95109 95 (0)
Drosophila immigrans 91 (0)
NCBITaxon:30019 88 (0)
Drosophila miranda 88 (0)
Human gammaherpesvirus 8 60 (+60)
NCBITaxon:7246 58 (0)
NCBITaxon:7300 53 (0)
NCBITaxon:76712 52 (0)
NCBITaxon:7231 50 (0)
Drosophila mojavensis 44 (0)
Drosophila affinidisjuncta 42 (0)
Drosophila teissieri 41 (0)
Hepacivirus C 40 (+40)
Drosophila persimilis 39 (0)
NCBITaxon:30042 39 (0)
Drosophila littoralis 35 (0)
Drosophila paulistorum 32 (0)
Vaccinia virus WR 32 (+32)
Onchocerca volvulus 30 (+30)
Drosophila takahashii 30 (0)
Drosophila lutescens 27 (0)
Human immunodeficiency virus 1 26 (+20)
NCBITaxon:7218 26 (0)
Drosophila arizonae 26 (0)
NCBITaxon:60717 24 (0)
Staphylococcus aureus 24 (+21)
NCBITaxon:111875 24 (0)
Drosophila ambigua 19 (0)
NCBITaxon:7283 18 (0)
NCBITaxon:42026 18 (0)
NCBITaxon:193351 17 (0)
NCBITaxon:125945 14 (0)
Drosophila auraria 14 (0)
NCBITaxon:7282 14 (0)
Drosophila sechellia 13 (0)
Drosophila hawaiiensis 12 (0)
NCBITaxon:64960 12 (0)
Jaagsiekte sheep retrovirus 11 (+11)
NCBITaxon:30036 9 (0)
Human rhinovirus B3 9 (+9)
Drosophila yakuba 9 (0)
Yellow fever virus 9 (+9)
NCBITaxon:195057 8 (0)
NCBITaxon:161732 8 (0)
NCBITaxon:47314 8 (0)
Simian virus 40 8 (+8)
Ovis aries 7 (-4)
Scaptodrosophila lebanonensis 7 (+1)
Mycobacterium bovis BCG 7 (+7)
NCBITaxon:94111 6 (0)
NCBITaxon:46794 6 (0)
Drosophila grimshawi 6 (0)
NCBITaxon:7291 6 (0)
NCBITaxon:30043 6 (0)
Human herpesvirus 5 strain AD169 6 (+6)
Vaccinia virus 5 (+4)
NCBITaxon:103846 5 (0)
NCBITaxon:76946 5 (0)
NCBITaxon:77771 5 (+5)
NCBITaxon:169138 4 (0)
NCBITaxon:30023 4 (0)
Canis lupus familiaris 4 (-4)
Drosophila eugracilis 4 (0)
Hepatitis B virus 4 (+4)
Influenza A virus (A/WSN/1933(H1N1)) 4 (+4)
NCBITaxon:7249 3 (0)
Human papillomavirus type 16 3 (+3)
NCBITaxon:1319 3 (+3)
Hepatitis C virus subtype 1b 3 (+3)
NCBITaxon:69217 3 (0)
NCBITaxon:218680 3 (0)
NCBITaxon:40844 2 (0)
Xenopus (Silurana) tropicalis 2 (0)
NCBITaxon:30056 2 (0)
NCBITaxon:57910 2 (0)
Drosophila madeirensis 2 (0)
Dengue virus group 2 (+2)
NCBITaxon:42062 2 (0)
Human alphaherpesvirus 3 2 (+2)
NCBITaxon:46822 2 (0)
Pan troglodytes 2 (0)
NCBITaxon:7297 2 (0)
Drosophila erecta 2 (0)
NCBITaxon:7279 2 (0)
Drosophila equinoxialis 2 (0)
NCBITaxon:30028 2 (0)
Drosophila pseudoobscura bogotana 2 (0)
NCBITaxon:141217 1 (0)
NCBITaxon:310057 1 (0)
NCBITaxon:1392869 1 (+1)
Drosophila borealis 1 (0)
NCBITaxon:7270 1 (0)
NCBITaxon:198721 1 (0)
NCBITaxon:66368 1 (0)
NCBITaxon:133978 1 (0)
NCBITaxon:7271 1 (0)
Drosophila orena 1 (0)
NCBITaxon:7252 1 (0)
NCBITaxon:7284 1 (0)
NCBITaxon:134002 1 (0)
NCBITaxon:30029 1 (0)
NCBITaxon:133981 1 (0)
NCBITaxon:7248 1 (0)
Arabidopsis thaliana 1 (-7)
Human respiratory syncytial virus 1 (+1)
Saccharomyces cerevisiae S288C 1 (0)
Conus marmoreus 0 (-1)
Autographa californica nucleopolyhedrovirus 0 (-14)
Anopheles funestus 0 (-4)
NCBITaxon:139456 0 (-1)
Ceratitis capitata 0 (-5)
Arachis hypogaea 0 (-1)
Other 0 (0)
Rhodopseudomonas palustris 0 (-2)
Musca domestica 0 (-13)
NCBITaxon:1051066 0 (-1)
NCBITaxon:55084 0 (-1)
NCBITaxon:8204 0 (-5)
NCBITaxon:12227 0 (-11)
Nodamura virus 0 (-1)
NCBITaxon:191210 0 (-2)
Kluyveromyces lactis 0 (-7)
Cricket paralysis virus 0 (-2)
Blattella germanica 0 (-2)
NCBITaxon:196280 0 (-3)
NCBITaxon:4957 0 (-3)
Euglena gracilis 0 (-3)
NCBITaxon:499226 0 (-1)
NCBITaxon:28456 0 (-4)
Human alphaherpesvirus 1 0 (-43)
NCBITaxon:2014434 0 (-1)
NCBITaxon:45264 0 (-2)
Vibrio parahaemolyticus 0 (-3)
NCBITaxon:7119 0 (-2)
Human adenovirus 5 0 (-5)
NCBITaxon:4808 0 (-1)
Ciona intestinalis 0 (-4)
Peanut clump virus 0 (-1)
Oryctolagus cuniculus 0 (-11)
NCBITaxon:11913 0 (-1)
Bacillus subtilis 0 (-3)
Schistocerca americana 0 (-2)
NCBITaxon:12287 0 (-8)
NCBITaxon:86600 0 (-349)
NCBITaxon:658227 0 (-24)
NCBITaxon:7740 0 (-4)
Helicobacter pylori 0 (-2)
Pediculus humanus 0 (-1)
Toxoplasma gondii 0 (-3)
NCBITaxon:7010 0 (-4)
Macaca mulatta polyomavirus 1 0 (-5)
NCBITaxon:32644 0 (-57)
NCBITaxon:56459 0 (-1)
Escherichia virus P1 0 (-17)
Spodoptera frugiperda ascovirus 1a 0 (-3)
Saccharomyces cerevisiae 0 (-26882)
NCBITaxon:35525 0 (-2)
Tribolium castaneum 0 (-24)
Hydra vulgaris 0 (-3)
Heteractis crispa 0 (-2)
Clavularia sp. 0 (-2)
BNODE:bb2cf0ff025d4622cf5 0 (-16)
Chlamydomonas reinhardtii 0 (-47)
Schistosoma japonicum 0 (-2)
Aedes aegypti 0 (-8)
Streptomyces hygroscopicus 0 (-1)
Hadronyche versuta 0 (-2)
Mus musculus domesticus 0 (-35507)
NCBITaxon:301887 0 (-1)
NCBITaxon:496660 0 (-4)
Anopheles gambiae 0 (-80)
Manduca sexta 0 (-1)
Pseudopleuronectes americanus 0 (-3)
NCBITaxon:82678 0 (-2)
Human papillomavirus type 18 0 (-2)
NCBITaxon:32630 0 (-197)
Rhodobacter sphaeroides 0 (-1)
NCBITaxon:32392 0 (-1)
Salmonella enterica subsp. enterica serovar Typhimurium 0 (-6)
NCBITaxon:11309 0 (-3)
Triticum aestivum 0 (-2)
NCBITaxon:1162220 0 (-1)
BNODE:f8141fdf82ae439afe6 0 (-3)
Photinus pyralis 0 (-143)
Human T-cell leukemia virus type I 0 (-1)
Listeria monocytogenes 0 (-5)
NCBITaxon:118641 0 (-1)
Acyrthosiphon pisum 0 (-2)
NCBITaxon:491304 0 (-1)
BNODE:b1a448feb24de46088b 0 (-1)
NCBITaxon:35743 0 (-1)
Bacillus halodurans 0 (-2)
Culex pipiens 0 (-3)
NCBITaxon:80765 0 (-3)
NCBITaxon:7007 0 (-1)
Aeromonas salmonicida 0 (-2)
BNODE:e3f956b320a9fec1cf3 0 (-1)
Cricetulus griseus 0 (-1)
NCBITaxon:88209 0 (-2)
Zygosaccharomyces bailii 0 (-3)
BNODE:a35efa09e0fb254e16a 0 (-14)
Enterococcus faecalis 0 (-1)
NCBITaxon:148603 0 (-6)
NCBITaxon:46745 0 (-1)
Tomato bushy stunt virus 0 (-4)
NCBITaxon:35572 0 (-1)
Natronomonas pharaonis 0 (-7)
BNODE:e66d689dd86a07aea60 0 (-3)
NCBITaxon:55100 0 (-3)
NCBITaxon:7120 0 (-1)
Enterobacteria phage T7 0 (-9)
Apis mellifera 0 (-13)
Cucurbit aphid-borne yellows virus 0 (-1)
Trichoplax adhaerens 0 (-2)
NCBITaxon:62873 0 (-2)
Escherichia coli 0 (-14337)
Streptococcus pyogenes 0 (-27)
Escherichia virus Lambda 0 (-2)
Campoletis sonorensis ichnovirus 0 (-2)
NCBITaxon:2387 0 (-13)
Armoracia rusticana 0 (-1)
NCBITaxon:46758 0 (-8)
Bradyrhizobium sp. 0 (-7)
Clostridium tetani 0 (-19)
Beet yellows virus 0 (-1)
Xenopus laevis 0 (-33)
Bombyx mori 0 (-18)
Mesocricetus auratus 0 (-5)
Drosophila C virus 0 (-4)
NCBITaxon:95512 0 (-4)
Guillardia theta 0 (-4)
NCBITaxon:703 0 (-1)
Providencia stuartii 0 (-2)
BNODE:13446b3196cf19c664c 0 (-5)
Limulus polyphemus 0 (-2)
Bordetella pertussis 0 (-5)
NCBITaxon:108931 0 (-2)
Sindbis virus 0 (-2)
Human betaherpesvirus 5 0 (-2)
Brevundimonas diminuta 0 (-1)
NCBITaxon:161601 0 (-1)
Turnip crinkle virus 0 (-1)
NCBITaxon:3821 0 (-1)
Deinococcus radiodurans 0 (-2)
NCBITaxon:39722 0 (-1)
NCBITaxon:45455 0 (-4)
Human mastadenovirus C 0 (-5)
NCBITaxon:12022 0 (-4)
Lucilia cuprina 0 (-3)
NCBITaxon:7111 0 (-8)
Glycine max 0 (-2)
Rhodococcus sp. 0 (-4)
Human T-lymphotropic virus 2 0 (-1)
Amphimedon queenslandica 0 (-2)
NCBITaxon:1962953 0 (-1)
Potato virus X 0 (-1)
Zygosaccharomyces rouxii 0 (-4)
Vibrio cholerae 0 (-3)
Bacillus anthracis 0 (-3)
Megaselia scalaris 0 (-1)
Cupiennius salei 0 (-8)
Bungarus multicinctus 0 (-2)
Danaus plexippus 0 (-6)
BNODE:1f58a0779e93c2ed4d2 0 (-1)
Halocynthia roretzi 0 (-1)
Aequorea victoria 0 (-3561)
Glossina morsitans 0 (-3)
Pseudomonas aeruginosa 0 (-1)
NCBITaxon:2389 0 (-15)
Ricinus communis 0 (-7)
NCBITaxon:12232 0 (-1)
NCBITaxon:418985 0 (-3)
NCBITaxon:1649241 0 (-1)
NCBITaxon:109461 0 (-2)
Corynephage beta 0 (-13)
Entacmaea quadricolor 0 (-21)
NCBITaxon:191766 0 (-1)
NCBITaxon:51655 0 (-1)
NCBITaxon:10456 0 (-1)
NCBITaxon:2138 0 (-3)
Monosiga brevicollis 0 (-3)
NCBITaxon:5530 0 (-2)
Heliothis virescens 0 (-3)
Ixodes scapularis 0 (-1)
Oryza sativa 0 (-2)
NCBITaxon:6136 0 (-6)
Artemia franciscana 0 (-6)
BNODE:eaba42a506034628afd 0 (-3)
NCBITaxon:12470 0 (-12)
Neurospora crassa 0 (-94)
NCBITaxon:38358 0 (-6)
NCBITaxon:955 0 (-5)
NCBITaxon:7038 0 (-2)
Penaeus merguiensis 0 (-1)
NCBITaxon:1208342 0 (-2)
Hemitripterus americanus 0 (-1)
BNODE:fc3f087ca372cb4d3a9 0 (-14)

Disease Phenotype Associations By Taxa

Production Query

Dev Query

species count
Total 155914 (+9894)
Other 145516 (-488)
Homo sapiens 10398 (+10382)

Gene Pathway By Taxa

Production Query

Dev Query

source count
Total 306792 (-9881)
Homo sapiens 141713 (-115)
Mus musculus 26954 (+923)
Rattus norvegicus 23563 (+19)
Canis lupus familiaris 19579 (-583)
Sus scrofa 19468 (-2047)
Danio rerio 19119 (-7123)
Bos taurus 18816 (-2304)
Gallus gallus 13867 (-2303)
Drosophila melanogaster 11514 (+795)
Caenorhabditis elegans 11345 (+3206)
Simian virus 40 117 (+117)
Dengue virus group 101 (+101)
Human gammaherpesvirus 8 90 (+90)
NCBITaxon:1319 81 (+81)
HIV-1 M:C_ETH2220 74 (+74)
Human immunodeficiency virus 1 68 (+68)
Hepacivirus C 60 (+60)
Lactobacillus johnsonii NCC 533 50 (+50)
Staphylococcus aureus 33 (+33)
Human rhinovirus B3 26 (+26)
Vaccinia virus WR 22 (+22)
Onchocerca volvulus 16 (+16)
Vaccinia virus 15 (+15)
Candida albicans SC5314 14 (+14)
Jaagsiekte sheep retrovirus 13 (+13)
Yellow fever virus 10 (+10)
Human alphaherpesvirus 3 8 (+8)
Human alphaherpesvirus 1 7 (+7)
Bacillus cereus ATCC 14579 7 (+7)
NCBITaxon:70865 6 (+6)
Hepatitis B virus 5 (+5)
Pseudomonas aeruginosa 5 (+5)
NCBITaxon:1086030 5 (+5)
Human herpesvirus 5 strain AD169 4 (+4)
Human respiratory syncytial virus B 3 (+3)
NCBITaxon:1392869 3 (+3)
Listeria innocua Clip11262 3 (+3)
Human respiratory syncytial virus 3 (+3)
NCBITaxon:387139 2 (+2)
Mycobacterium tuberculosis H37Rv 1 (+1)
Human papillomavirus type 16 1 (+1)
Mycobacterium bovis BCG 1 (+1)
Other 0 (0)
organism 0 (-878)
Mus musculus domesticus 0 (-325)

Genotype Phenotype Associations By Taxa

Production Query

Dev Query

species count
Total 560622 (-400490)
Mus musculus 358852 (+6006)
Danio rerio 107131 (+5202)
Homo sapiens 75564 (+1160)
organism 17500 (+449)
sequence_alteration 1520 (+1520)
Mus musculus molossinus 13 (0)
NCBITaxon:477815 12 (0)
Mus musculus castaneus 12 (0)
NCBITaxon:10102 8 (0)
Mus 4 (0)
Mus musculus musculus 3 (-11)
Mus spretus 2 (0)
Mus musculus bactrianus 1 (0)
Drosophila melanogaster 0 (-412276)
Other 0 (0)
Mus musculus domesticus 0 (-2540)

Gene Homology By Subject Taxa

Production Query

Dev Query

source count
Total 7875023 (+1093822)
Mus musculus 1036408 (+65734)
Danio rerio 921806 (+93959)
Rattus norvegicus 827075 (+49954)
Caenorhabditis elegans 677968 (+65748)
Sus scrofa 614941 (+27663)
Homo sapiens 613153 (+52483)
Drosophila melanogaster 421288 (+60889)
Canis lupus familiaris 360851 (+360851)
Bos taurus 350241 (+26117)
Equus caballus 323800 (+25369)
Xenopus (Silurana) tropicalis 283721 (+24252)
Gallus gallus 277359 (+30687)
Pan troglodytes 211196 (+14552)
Monodelphis domestica 199154 (+13568)
Macaca mulatta 186119 (+13095)
Felis catus 179252 (+179252)
Anolis carolinensis 175119 (+12491)
Arabidopsis thaliana 113831 (-24565)
Saccharomyces cerevisiae S288C 82572 (+12177)
Ornithorhynchus anatinus 17382 (+1069)
organism 334 (0)
Human alphaherpesvirus 1 131 (+131)
Hepacivirus C 130 (+130)
Human immunodeficiency virus 1 102 (+102)
Dengue virus group 99 (+99)
Mycobacterium tuberculosis H37Rv 79 (+79)
Listeria innocua Clip11262 67 (+67)
Simian virus 40 67 (+67)
Bacillus cereus ATCC 14579 56 (+56)
Hepatitis B virus 53 (+53)
NCBITaxon:1319 51 (+51)
Murine leukemia virus 51 (+51)
Hepatitis C virus subtype 1b 41 (+41)
HIV-1 M:C_ETH2220 40 (+40)
Human respiratory syncytial virus B 39 (+39)
Candida albicans SC5314 37 (+37)
NCBITaxon:1392869 35 (+35)
Human papillomavirus type 16 35 (+35)
Human alphaherpesvirus 3 29 (+29)
Yellow fever virus 26 (+26)
Human gammaherpesvirus 8 25 (+25)
Vaccinia virus 22 (+22)
Human rhinovirus B3 21 (+21)
NCBITaxon:387139 21 (+21)
Influenza A virus (A/WSN/1933(H1N1)) 19 (+19)
Vaccinia virus WR 17 (+17)
Human herpesvirus 5 strain AD169 17 (+17)
Candida albicans 17 (+17)
Yersinia pestis 16 (+16)
Onchocerca volvulus 16 (+16)
Staphylococcus aureus 15 (+15)
Jaagsiekte sheep retrovirus 15 (+15)
NCBITaxon:70865 14 (+14)
Mycobacterium bovis BCG 14 (+14)
Human respiratory syncytial virus 11 (+11)
NCBITaxon:1086030 9 (+9)
Lactobacillus johnsonii NCC 533 9 (+9)
Pseudomonas aeruginosa 7 (+7)
Other 0 (0)
Mus musculus domesticus 0 (-12976)

Case Gene By Source

Production Query

Dev Query

source count
Total 1292 (+26)
https://data.monarchinitiative.org/ttl/coriell.ttl 1290 (+28)
https://data.monarchinitiative.org/ttl/omim.ttl 1267 (+3)
https://data.monarchinitiative.org/ttl/gwascatalog.ttl 127 (+127)
https://data.monarchinitiative.org/ttl/udp.ttl 2 (-2)
Other 0 (0)

SciGraph Queries

Gene Variant Mix-ups

Production Query

Dev Query

field count
variant 5179 (-5)

Sequence Features

Production Query

Dev Query

field count
features 7391613 (-1865896)

Genes in more than one taxa

Production Query

Dev Query

field count
request timeout 0

Variant Loci

Production Query

Dev Query

field count
variants 840993 (-26097)

Genes

Production Query

Dev Query

field count
genes 1834547 (-665311)

Disease Phenotype Mix-ups

Production Query

Dev Query

field count
disease 131 (+3)

Genotypes

Production Query

Dev Query

field count
genotypes 236375 (-541436)

Reagent Targeted Gene

Production Query

Dev Query

field count
rtg 106222 (-138446)

Gene Disease Mix-ups

Production Query

Dev Query

field count
gene 114 (+114)

nodes with subClassOf cycles (depth 1)

Production Query

Dev Query

field count
node_count 127 (+126)

Number of edges connected to owl:Nothing

Production Query

Dev Query

field count
nothing 0 (0)

nodes with subClassOf cycles (depth 2)

Production Query

Dev Query

field count
node_count 2 (+1)