Solr Queries

Gene Disease Causal Associations By Taxa

Production Query

Dev Query

species count
Total 10318 (+186)
Homo sapiens 9568 (+171)
Canis lupus familiaris 230 (0)
Bos taurus 120 (0)
Felis catus 62 (0)
Ovis aries 47 (0)
Gallus gallus 41 (0)
Equus caballus 39 (0)
Sus scrofa 38 (0)
Capra hircus 15 (0)
Oryctolagus cuniculus 12 (0)
Mus musculus 12 (+1)
Coturnix japonica 9 (0)
Neovison vison 5 (0)
Equus asinus 5 (0)
Bubalus bubalis 4 (0)
Mycobacterium tuberculosis H37Rv 4 (+4)
Mesocricetus auratus 4 (0)
Human immunodeficiency virus 1 3 (+3)
NCBITaxon:198806 3 (0)
Vulpes lagopus 3 (0)
Macaca mulatta 3 (0)
Oryzias latipes 3 (0)
Bos grunniens 3 (0)
Mammuthus primigenius 2 (0)
Macaca fascicularis 2 (0)
Vulpes vulpes 2 (0)
Mustela putorius furo 2 (0)
Vaccinia virus WR 2 (+2)
Onchocerca volvulus 2 (+2)
Meleagris gallopavo 2 (0)
NCBITaxon:32536 2 (0)
NCBITaxon:48883 2 (0)
Human alphaherpesvirus 1 2 (+2)
NCBITaxon:57662 1 (0)
Ctenopharyngodon idella 1 (0)
Columba livia 1 (0)
NCBITaxon:34892 1 (0)
NCBITaxon:46844 1 (0)
Numida meleagris 1 (0)
Mycobacterium bovis BCG 1 (+1)
NCBITaxon:338458 1 (0)
Oreochromis niloticus 1 (0)
Symphalangus syndactylus 1 (0)
Macaca fuscata 1 (0)
Rangifer tarandus 1 (0)
Elephas maximus 1 (0)
NCBITaxon:43597 1 (0)
NCBITaxon:61406 1 (0)
Camelus dromedarius 1 (0)
Panthera tigris 1 (0)
NCBITaxon:9690 1 (0)
NCBITaxon:120794 1 (0)
Balaenoptera acutorostrata 1 (0)
Ursus americanus 1 (0)
Hepacivirus C 1 (+1)
NCBITaxon:57661 1 (0)
Hylobates lar 1 (0)
Canis lupus 1 (0)
NCBITaxon:345164 1 (0)
Coturnix coturnix 1 (0)
Canis latrans 1 (0)
NCBITaxon:61455 1 (0)
Anas platyrhynchos 1 (0)
NCBITaxon:54059 1 (0)
NCBITaxon:38666 1 (0)
Takifugu rubripes 1 (0)
Peromyscus maniculatus 1 (0)
NCBITaxon:255217 1 (0)
Phoenicopterus ruber 1 (0)
Cebus apella 1 (0)
NCBITaxon:68352 1 (0)
Delphinapterus leucas 1 (0)
NCBITaxon:9773 1 (0)
NCBITaxon:8523 1 (0)
NCBITaxon:61402 1 (0)
Sus scrofa domesticus 1 (0)
Sciurus carolinensis 1 (0)
Cavia porcellus 1 (0)
Aepyceros melampus 1 (0)
Astyanax 1 (0)
NCBITaxon:61386 1 (0)
Gorilla gorilla 1 (0)
Peromyscus polionotus 1 (0)
NCBITaxon:328808 1 (0)
NCBITaxon:9579 1 (0)
Rattus norvegicus 1 (0)
Tursiops truncatus 1 (0)
NCBITaxon:87177 1 (0)
Panthera tigris tigris 1 (0)
NCBITaxon:103584 1 (0)
NCBITaxon:9691 1 (0)
Bos mutus 1 (0)
NCBITaxon:273489 1 (0)
Pan troglodytes 1 (0)
NCBITaxon:70340 1 (0)
NCBITaxon:118797 1 (0)
Dromaius novaehollandiae 1 (0)
NCBITaxon:37029 1 (0)
Mus musculus domesticus 0 (-1)
Other 0 (0)

Model Disease Associations By Source

Production Query

Dev Query

source count
Total 26354 (-114)
https://data.monarchinitiative.org/ttl/coriell.ttl 12013 (+30)
https://data.monarchinitiative.org/ttl/mgi.ttl 7946 (+142)
https://data.monarchinitiative.org/ttl/wormbase.ttl 3306 (+269)
https://data.monarchinitiative.org/ttl/flybase.ttl 1207 (-594)
https://data.monarchinitiative.org/ttl/zfin.ttl 949 (+39)
https://data.monarchinitiative.org/ttl/omia.ttl 933 (0)
Other 0 (0)

Gene Disease Non-causal Associations By Taxa

Production Query

Dev Query

species count
Total 33693 (+16198)
Homo sapiens 33234 (+16056)
Mus musculus 215 (+10)
Rattus norvegicus 34 (+2)
Drosophila melanogaster 33 (-1)
Human rhinovirus B3 29 (+29)
Danio rerio 24 (0)
Simian virus 40 23 (+23)
Human alphaherpesvirus 2 14 (+14)
Mycobacterium tuberculosis H37Rv 14 (+14)
Dengue virus group 9 (+9)
Hepacivirus C 9 (+9)
Onchocerca volvulus 6 (+6)
Mycobacterium bovis BCG 6 (+6)
Sus scrofa 5 (0)
Vaccinia virus 5 (+5)
Bos taurus 4 (0)
Caenorhabditis elegans 4 (0)
Human T-cell lymphotrophic virus type 1 (strain ATK) 4 (+4)
Bacillus megaterium 3 (+3)
Escherichia coli UTI89 2 (+2)
Gallus gallus 2 (0)
NCBITaxon:1322345 2 (+2)
Xenopus (Silurana) tropicalis 2 (+1)
NCBITaxon:387139 2 (+2)
Human immunodeficiency virus 1 1 (+1)
Bacillus cereus ATCC 14579 1 (+1)
Mycobacterium tuberculosis 1 (+1)
Hepatitis C virus subtype 2a 1 (+1)
NCBITaxon:1392869 1 (+1)
Staphylococcus aureus 1 (+1)
Vaccinia virus WR 1 (+1)
Escherichia coli 1 (+1)
Other 0 (0)
Canis lupus familiaris 0 (-1)
Mus musculus domesticus 0 (-5)

Case Model By Source

Production Query

Dev Query

source count
Total 29852 (+45)
https://data.monarchinitiative.org/ttl/coriell.ttl 29852 (+45)
Other 0 (0)

Gene Homology By Subject Taxa

Production Query

Dev Query

source count
Total 7881970 (+1100769)
Mus musculus 1042163 (+71489)
Danio rerio 921947 (+94100)
Rattus norvegicus 827157 (+50036)
Caenorhabditis elegans 677463 (+65243)
Sus scrofa 614947 (+27669)
Homo sapiens 613734 (+53064)
Drosophila melanogaster 421419 (+61020)
Canis lupus familiaris 360897 (+360897)
Bos taurus 350242 (+26118)
Equus caballus 323824 (+25393)
Xenopus (Silurana) tropicalis 283774 (+24305)
Gallus gallus 277382 (+30710)
Pan troglodytes 211248 (+14604)
Monodelphis domestica 199171 (+13585)
Macaca mulatta 186175 (+13151)
Felis catus 179290 (+179290)
Anolis carolinensis 175167 (+12539)
Arabidopsis thaliana 113934 (-24462)
Saccharomyces cerevisiae S288C 82626 (+12231)
Ornithorhynchus anatinus 17384 (+1071)
organism 336 (+2)
Hepacivirus C 181 (+181)
Human alphaherpesvirus 1 162 (+162)
Salmonella enterica subsp. enterica serovar Typhi 137 (+137)
Mycobacterium tuberculosis 135 (+135)
Hepatitis C virus subtype 2a 131 (+131)
Human immunodeficiency virus 1 110 (+110)
Simian virus 40 67 (+67)
Candida albicans 58 (+58)
Dengue virus group 51 (+51)
Escherichia coli 50 (+50)
Human adenovirus 5 48 (+48)
Vaccinia virus 41 (+41)
Staphylococcus aureus 39 (+39)
Mycobacterium tuberculosis H37Rv 37 (+37)
NCBITaxon:1392869 35 (+35)
NCBITaxon:176281 29 (+29)
Human T-cell lymphotrophic virus type 1 (strain ATK) 29 (+29)
Escherichia coli UTI89 28 (+28)
Bacillus cereus ATCC 14579 27 (+27)
HIV-1 M:B_HXB2R 26 (+26)
Serratia marcescens 26 (+26)
Bacillus megaterium 24 (+24)
Sindbis virus 23 (+23)
Human rhinovirus B3 21 (+21)
Jaagsiekte sheep retrovirus 19 (+19)
NCBITaxon:1322345 18 (+18)
Helicobacter pylori 17 (+17)
Vaccinia virus WR 17 (+17)
Onchocerca volvulus 16 (+16)
Fusarium oxysporum species complex 15 (+15)
NCBITaxon:70865 14 (+14)
Mycobacterium bovis BCG 14 (+14)
NCBITaxon:387139 12 (+12)
NCBITaxon:1086030 9 (+9)
Hepatitis B virus 9 (+9)
Human alphaherpesvirus 2 8 (+8)
Escherichia coli K-12 7 (+7)
Other 0 (0)
Mus musculus domesticus 0 (-12976)

Case Gene By Source

Production Query

Dev Query

source count
Total 1291 (+25)
https://data.monarchinitiative.org/ttl/coriell.ttl 1289 (+27)
https://data.monarchinitiative.org/ttl/omim.ttl 1266 (+2)
https://data.monarchinitiative.org/ttl/gwascatalog.ttl 127 (+127)
https://data.monarchinitiative.org/ttl/udp.ttl 2 (-2)
Other 0 (0)

Relations

Production Query

Dev Query

relation count
Total 36105608 (-6334766)
is_about 8566689 (+405061)
has phenotype 4651590 (-492260)
interacts with 2977954 (-645930)
in paralogy relationship with 2931572 (+144642)
Source 2681909 (+87647)
Other 2593975 (-2297539)
in 1 to 1 orthology relationship with 2552903 (+563293)
in orthology relationship with 2108275 (+396847)
expressed in 1862216 (+3745)
involved_in 1550420 (+446665)
is_allele_of 851979 (-169713)
is part of 470222 (+113407)
enables 416640 (+97970)
has_affected_feature 405666 (+247914)
has_genotype 404621 (-343190)
in xenology relationship with 289220 (-4013)
contributes to condition 192779 (+161709)
is marker for 140584 (+545)
mentions 104149 (-4586544)
targets_gene 64746 (-110747)
is_expression_variant_of 64199 (-107069)
pathogenic_for_condition 58679 (+3382)
is_reference_allele_of 58320 (+183)
is model of 37645 (-92)
derives_from 29852 (+45)
likely_pathogenic_for_condition 19300 (+626)
causes condition 10477 (-357)
sequence_derives_from 8461 (-141667)
is causal susceptibility factor for 430 (+430)
contributes to 80 (-271)
disease has basis in feature 54 (+1)
is_variant_allele_of 2 (0)
colocalizes with 0 (-83256)
genetically interacts with 0 (-26230)

Variant Genotype Associations By Source

Production Query

Dev Query

source count
Total 823277 (-862292)
https://data.monarchinitiative.org/ttl/mmrrc.ttl 369418 (+1244)
https://data.monarchinitiative.org/ttl/mgi.ttl 277206 (+6027)
https://data.monarchinitiative.org/ttl/zfin.ttl 158068 (+4706)
https://data.monarchinitiative.org/ttl/impc.ttl 72181 (+237)
https://data.monarchinitiative.org/ttl/coriell.ttl 7270 (+4)
https://data.monarchinitiative.org/ttl/udp.ttl 112 (0)
Other 0 (0)
https://data.monarchinitiative.org/ttl/flybase.ttl 0 (-873495)

Gene Function By Taxa

Production Query

Dev Query

source count
Total 1893672 (+431105)
Mus musculus 341924 (+5775)
Homo sapiens 314535 (+1014)
Rattus norvegicus 294398 (+3351)
Danio rerio 171899 (-3414)
Sus scrofa 137514 (+115999)
Gallus gallus 123144 (+106974)
Bos taurus 121711 (+100591)
Canis lupus familiaris 116201 (+96039)
Caenorhabditis elegans 101115 (+5077)
Drosophila melanogaster 100344 (+602)
Saccharomyces cerevisiae S288C 68899 (+168)
Human immunodeficiency virus 1 247 (+247)
Hepacivirus C 191 (+191)
Vaccinia virus 169 (+169)
Simian virus 40 152 (+152)
Dengue virus group 97 (+97)
Mycobacterium tuberculosis H37Rv 79 (+79)
Human rhinovirus B3 78 (+78)
Human alphaherpesvirus 1 63 (+63)
Jaagsiekte sheep retrovirus 62 (+62)
NCBITaxon:1322345 62 (+62)
Escherichia coli 61 (+61)
Mycobacterium tuberculosis 60 (+60)
Human T-cell lymphotrophic virus type 1 (strain ATK) 57 (+57)
HIV-1 M:B_HXB2R 43 (+43)
Hepatitis C virus subtype 2a 42 (+42)
Onchocerca volvulus 42 (+42)
Human alphaherpesvirus 2 40 (+40)
Mycobacterium bovis BCG 40 (+40)
Vaccinia virus WR 39 (+39)
organism 37 (-841)
Sindbis virus 31 (+31)
NCBITaxon:1086030 29 (+29)
Bacillus megaterium 27 (+27)
Bacillus cereus ATCC 14579 26 (+26)
NCBITaxon:387139 25 (+25)
Candida albicans 22 (+22)
NCBITaxon:176281 22 (+22)
Staphylococcus aureus 20 (+20)
Escherichia coli UTI89 18 (+18)
Helicobacter pylori 18 (+18)
NCBITaxon:70865 11 (+11)
Salmonella enterica subsp. enterica serovar Typhi 11 (+11)
Human adenovirus 5 11 (+11)
Escherichia coli K-12 11 (+11)
Serratia marcescens 10 (+10)
NCBITaxon:1392869 8 (+8)
Fusarium oxysporum species complex 8 (+8)
NCBITaxon:536056 7 (+7)
Streptococcus pneumoniae 7 (+7)
Hepatitis B virus 5 (+5)
Other 0 (0)
Mus musculus domesticus 0 (-2181)

Publication Disease By Source

Production Query

Dev Query

source count
Total 291859 (+55311)
https://data.monarchinitiative.org/ttl/ctd.ttl 98954 (+452)
https://data.monarchinitiative.org/ttl/zfin.ttl 80126 (+10820)
https://data.monarchinitiative.org/ttl/clinvarxml_alpha.nt 48818 (+48818)
https://data.monarchinitiative.org/ttl/wormbase.ttl 24877 (+24499)
https://data.monarchinitiative.org/ttl/go.ttl 20058 (+18826)
https://data.monarchinitiative.org/ttl/ncbigene.ttl 15280 (+15158)
https://data.monarchinitiative.org/ttl/mgi.ttl 14088 (+11964)
https://data.monarchinitiative.org/ttl/omia.ttl 13765 (0)
https://data.monarchinitiative.org/ttl/flybase.ttl 3857 (+1571)
https://data.monarchinitiative.org/ttl/coriell.ttl 3827 (+10)
https://data.monarchinitiative.org/ttl/gwascatalog.ttl 2307 (+175)
https://data.monarchinitiative.org/ttl/hpoa.ttl 1455 (+265)
https://data.monarchinitiative.org/ttl/mgi_slim.ttl 750 (+23)
https://data.monarchinitiative.org/ttl/hgnc.ttl 427 (+426)
https://data.monarchinitiative.org/ttl/monarch.ttl 184 (0)
https://data.monarchinitiative.org/ttl/mmrrc.ttl 102 (+2)
Other 0 (0)
https://data.monarchinitiative.org/ttl/clinvar.ttl 0 (-44539)

Variant Disease Associations By Taxa

Production Query

Dev Query

species count
Total 112667 (+8034)
Homo sapiens 111894 (+8072)
organism 735 (-38)
Mus musculus 37 (+16)
Bos taurus 1 (0)
Other 0 (0)
Mus musculus domesticus 0 (-16)

Gene Disease Non-Causal Associations By Source

Production Query

Dev Query

species count
Total 33693 (+16198)
https://data.monarchinitiative.org/ttl/gwascatalog.ttl 16695 (+16454)
https://data.monarchinitiative.org/ttl/ctd.ttl 16181 (+221)
https://data.monarchinitiative.org/ttl/orphanet.ttl 1154 (-29)
https://data.monarchinitiative.org/ttl/omim.ttl 735 (-47)
https://data.monarchinitiative.org/ttl/kegg.ttl 532 (-78)
https://data.monarchinitiative.org/ttl/clinvarxml_alpha.nt 339 (+339)
https://data.monarchinitiative.org/ttl/coriell.ttl 36 (+1)
https://data.monarchinitiative.org/ttl/udp.ttl 2 (-2)
Other 0 (0)
https://data.monarchinitiative.org/ttl/clinvar.ttl 0 (-388)

Variant Phenotype Associations By Taxa

Production Query

Dev Query

species count
Total 3572325 (+61084)
Homo sapiens 2132634 (+246718)
organism 446342 (-185151)
Mus musculus 412848 (+57576)
Caenorhabditis elegans 193003 (+101942)
Bos taurus 125205 (+7)
Drosophila melanogaster 111499 (-99292)
Danio rerio 93749 (+1694)
Sus scrofa 34559 (0)
Gallus gallus 13529 (+190)
Ovis aries 1519 (+26)
sequence_alteration 1305 (+1305)
Equus caballus 1009 (+2)
Drosophila hydei 644 (+644)
Drosophila subobscura 596 (+596)
Drosophila virilis 592 (+592)
Drosophila ananassae 398 (+398)
Drosophila pseudoobscura pseudoobscura 321 (+321)
Drosophila simulans 279 (+279)
Drosophila willistoni 251 (+251)
Drosophila funebris 228 (+228)
NCBITaxon:40372 206 (+206)
NCBITaxon:7257 156 (+156)
NCBITaxon:30019 142 (+142)
Drosophila immigrans 108 (+108)
NCBITaxon:95109 100 (+100)
NCBITaxon:30033 95 (+95)
Drosophila mauritiana 76 (+76)
NCBITaxon:7246 76 (+76)
NCBITaxon:7300 71 (+71)
NCBITaxon:30042 68 (+68)
Drosophila buzzatii 67 (+67)
Drosophila miranda 65 (+65)
Drosophila paulistorum 60 (+60)
NCBITaxon:76712 52 (+52)
Drosophila littoralis 45 (+45)
Drosophila persimilis 39 (+39)
NCBITaxon:7218 35 (+35)
Drosophila mojavensis 34 (+34)
Drosophila ambigua 28 (+28)
Saccharomyces cerevisiae S288C 23 (0)
NCBITaxon:193351 22 (+22)
Drosophila auraria 18 (+18)
NCBITaxon:125945 18 (+18)
NCBITaxon:7282 14 (+14)
NCBITaxon:7283 13 (+13)
NCBITaxon:64960 11 (+11)
NCBITaxon:46794 10 (+10)
NCBITaxon:42026 10 (+10)
NCBITaxon:30036 9 (+9)
Drosophila sechellia 9 (+9)
NCBITaxon:161732 9 (+9)
Drosophila takahashii 8 (+8)
NCBITaxon:47314 7 (+7)
NCBITaxon:30043 7 (+7)
NCBITaxon:169138 7 (+7)
NCBITaxon:94111 6 (+6)
NCBITaxon:7291 5 (+5)
NCBITaxon:40844 4 (+4)
NCBITaxon:30028 4 (+4)
Drosophila eugracilis 4 (+4)
NCBITaxon:30023 4 (+4)
NCBITaxon:69217 4 (+4)
NCBITaxon:46822 4 (+4)
NCBITaxon:7252 3 (+3)
Drosophila pseudoobscura bogotana 3 (+3)
Drosophila equinoxialis 3 (+3)
NCBITaxon:198721 3 (+3)
NCBITaxon:218680 3 (+3)
NCBITaxon:103846 3 (+3)
NCBITaxon:141217 2 (+2)
NCBITaxon:133981 2 (+2)
NCBITaxon:134002 2 (+2)
NCBITaxon:7270 2 (+2)
Scaptodrosophila lebanonensis 2 (+2)
NCBITaxon:195057 2 (+2)
NCBITaxon:30056 2 (+2)
NCBITaxon:57910 2 (+2)
NCBITaxon:7297 2 (+2)
NCBITaxon:133978 2 (+2)
NCBITaxon:7279 2 (+2)
NCBITaxon:30029 2 (+2)
NCBITaxon:76946 2 (+2)
Drosophila madeirensis 2 (+2)
NCBITaxon:42062 2 (+2)
Drosophila erecta 2 (+2)
NCBITaxon:7271 2 (+2)
Drosophila arizonae 2 (+2)
Drosophila yakuba 2 (+2)
NCBITaxon:7284 1 (+1)
NCBITaxon:66368 1 (+1)
Drosophila lutescens 1 (+1)
Other 1 (-182)
NCBITaxon:7231 1 (+1)
NCBITaxon:310057 1 (+1)
Mus musculus domesticus 0 (-68851)

Publication Model By Source

Production Query

Dev Query

source count
Total 48592 (+30114)
https://data.monarchinitiative.org/ttl/wormbase.ttl 15502 (+15251)
https://data.monarchinitiative.org/ttl/mgi.ttl 14884 (+12878)
https://data.monarchinitiative.org/ttl/go.ttl 12708 (+11635)
https://data.monarchinitiative.org/ttl/coriell.ttl 8622 (+34)
https://data.monarchinitiative.org/ttl/ncbigene.ttl 8009 (+7883)
https://data.monarchinitiative.org/ttl/flybase.ttl 4098 (+1667)
https://data.monarchinitiative.org/ttl/zfin.ttl 2851 (+284)
https://data.monarchinitiative.org/ttl/omia.ttl 2635 (0)
https://data.monarchinitiative.org/ttl/mgi_slim.ttl 780 (+23)
https://data.monarchinitiative.org/ttl/mmrrc.ttl 102 (+4)
https://data.monarchinitiative.org/ttl/ctd.ttl 3 (+3)
Other 0 (0)

Case Genotype By Source

Production Query

Dev Query

source count
Total 3834 (+11)
https://data.monarchinitiative.org/ttl/coriell.ttl 3801 (+11)
https://data.monarchinitiative.org/ttl/udp.ttl 33 (0)
Other 0 (0)

Publication Phenotype By Source

Production Query

Dev Query

source count
Total 5091225 (-1191623)
https://data.monarchinitiative.org/ttl/ncbigene.ttl 4173721 (+128685)
https://data.monarchinitiative.org/ttl/go.ttl 1038389 (+229059)
https://data.monarchinitiative.org/ttl/flybase.ttl 96829 (-1892315)
https://data.monarchinitiative.org/ttl/sgd.ttl 86732 (0)
https://data.monarchinitiative.org/ttl/zfin.ttl 70305 (-30)
https://data.monarchinitiative.org/ttl/gwascatalog.ttl 59809 (+58900)
https://data.monarchinitiative.org/ttl/mgi.ttl 57835 (+46665)
https://data.monarchinitiative.org/ttl/clinvarxml_alpha.nt 52572 (+52572)
https://data.monarchinitiative.org/ttl/wormbase.ttl 36448 (+7921)
https://data.monarchinitiative.org/ttl/mgi_slim.ttl 31951 (+241)
https://data.monarchinitiative.org/ttl/omim.ttl 28418 (+805)
https://data.monarchinitiative.org/ttl/hgnc.ttl 27893 (+271)
https://data.monarchinitiative.org/ttl/ctd.ttl 24111 (+428)
https://data.monarchinitiative.org/ttl/zfinslim.ttl 13172 (+581)
https://data.monarchinitiative.org/ttl/mmrrc.ttl 7503 (+5266)
https://data.monarchinitiative.org/ttl/impc.ttl 4630 (+4491)
https://data.monarchinitiative.org/ttl/animalqtldb.ttl 4613 (0)
https://data.monarchinitiative.org/ttl/rgd.ttl 176 (+3)
https://data.monarchinitiative.org/ttl/hpoa.ttl 4 (0)
Other 0 (0)
https://data.monarchinitiative.org/ttl/clinvar.ttl 0 (-51789)
https://data.monarchinitiative.org/ttl/biogrid.ttl 0 (-317771)

Gene Interactions By Source

Production Query

Dev Query

source count
https://data.monarchinitiative.org/ttl/string.ttl 2977954 (-2050)
Total 2977954 (-672160)
Other 0 (0)
https://data.monarchinitiative.org/ttl/biogrid.ttl 0 (-776804)

Case Phenotype By Source

Production Query

Dev Query

source count
Total 1085 (0)
https://data.monarchinitiative.org/ttl/udp.ttl 1076 (0)
https://data.monarchinitiative.org/ttl/coriell.ttl 9 (0)
Other 0 (0)

Case Variant By Source

Production Query

Dev Query

source count
Total 4405 (+3)
https://data.monarchinitiative.org/ttl/coriell.ttl 4293 (+3)
https://data.monarchinitiative.org/ttl/udp.ttl 112 (0)
Other 0 (0)

Genotype Phenotype Associations By Source

Production Query

Dev Query

source count
Total 560603 (-400509)
https://data.monarchinitiative.org/ttl/mgi.ttl 338204 (+4536)
https://data.monarchinitiative.org/ttl/zfin.ttl 107589 (+17659)
https://data.monarchinitiative.org/ttl/coriell.ttl 75404 (+1000)
https://data.monarchinitiative.org/ttl/hpoa.ttl 75401 (+1000)
https://data.monarchinitiative.org/ttl/impc.ttl 28433 (0)
https://data.monarchinitiative.org/ttl/mpd.ttl 10963 (+578)
https://data.monarchinitiative.org/ttl/mgi_slim.ttl 10 (0)
Other 0 (0)
https://data.monarchinitiative.org/ttl/go.ttl 0 (-12006)
https://data.monarchinitiative.org/ttl/flybase.ttl 0 (-412276)

Model Disease Associations By Taxa

Production Query

Dev Query

species count
Total 26354 (-114)
Homo sapiens 12010 (+30)
Mus musculus 7829 (+631)
Caenorhabditis elegans 3306 (+269)
Drosophila melanogaster 1207 (-594)
Danio rerio 947 (+39)
Carnivora 684 (0)
Ruminantia 144 (0)
organism 96 (-1)
Felidae 55 (0)
Equidae 34 (0)
sequence_alteration 18 (+18)
Sus 5 (0)
Suidae 5 (0)
Bos taurus 3 (0)
Gallus gallus 3 (0)
Bovidae 2 (0)
Other 2 (0)
NCBITaxon:477815 2 (0)
Viridiplantae 1 (0)
Mus musculus castaneus 1 (0)
Mus musculus domesticus 0 (-504)
Mus musculus musculus 0 (-2)

Gene Pathway By Source

Production Query

Dev Query

source count
Total 306921 (-9752)
https://data.monarchinitiative.org/ttl/reactome.ttl 204133 (-9888)
https://data.monarchinitiative.org/ttl/ctd.ttl 135636 (-31)
https://data.monarchinitiative.org/ttl/ensembl.ttl 37 (-658)
Other 0 (0)

Gene Pathway By Taxa

Production Query

Dev Query

source count
Total 306921 (-9752)
Homo sapiens 141774 (-54)
Mus musculus 27011 (+980)
Rattus norvegicus 23563 (+19)
Canis lupus familiaris 19579 (-583)
Sus scrofa 19468 (-2047)
Danio rerio 19119 (-7123)
Bos taurus 18811 (-2309)
Gallus gallus 13867 (-2303)
Drosophila melanogaster 11514 (+795)
Caenorhabditis elegans 11380 (+3241)
Simian virus 40 117 (+117)
Dengue virus group 104 (+104)
Escherichia coli 86 (+86)
Mycobacterium tuberculosis H37Rv 86 (+86)
Hepacivirus C 74 (+74)
organism 37 (-841)
HIV-1 M:B_HXB2R 31 (+31)
Human immunodeficiency virus 1 30 (+30)
Human alphaherpesvirus 1 29 (+29)
Mycobacterium tuberculosis 29 (+29)
Human rhinovirus B3 26 (+26)
Vaccinia virus WR 22 (+22)
Vaccinia virus 20 (+20)
Human T-cell lymphotrophic virus type 1 (strain ATK) 17 (+17)
Onchocerca volvulus 16 (+16)
NCBITaxon:1322345 12 (+12)
Human alphaherpesvirus 2 11 (+11)
Jaagsiekte sheep retrovirus 9 (+9)
Candida albicans 6 (+6)
NCBITaxon:70865 6 (+6)
Helicobacter pylori 6 (+6)
NCBITaxon:1086030 5 (+5)
Bacillus megaterium 5 (+5)
NCBITaxon:536056 5 (+5)
Sindbis virus 5 (+5)
Escherichia coli K-12 5 (+5)
Staphylococcus aureus 5 (+5)
Streptococcus pneumoniae 5 (+5)
Bacillus cereus ATCC 14579 4 (+4)
Escherichia coli UTI89 3 (+3)
NCBITaxon:176281 3 (+3)
Hepatitis C virus subtype 2a 3 (+3)
Salmonella enterica subsp. enterica serovar Typhi 3 (+3)
NCBITaxon:1392869 3 (+3)
Serratia marcescens 3 (+3)
NCBITaxon:387139 3 (+3)
Mycobacterium bovis BCG 1 (+1)
Other 0 (0)
Mus musculus domesticus 0 (-325)

Gene Interactions By Subject Taxa

Production Query

Dev Query

source count
Total 2977954 (-672160)
Homo sapiens 815942 (-518321)
Mus musculus 676453 (-48965)
Rattus norvegicus 484929 (0)
Drosophila melanogaster 375170 (-94836)
Caenorhabditis elegans 328246 (-13233)
Danio rerio 292466 (-477)
Hepacivirus C 767 (+767)
Simian virus 40 548 (+548)
Escherichia coli 451 (+451)
Dengue virus group 298 (+298)
Human T-cell lymphotrophic virus type 1 (strain ATK) 287 (+287)
Human alphaherpesvirus 1 268 (+268)
Vaccinia virus WR 225 (+225)
Helicobacter pylori 190 (+190)
Vaccinia virus 162 (+162)
Mycobacterium tuberculosis 159 (+159)
Human rhinovirus B3 153 (+153)
HIV-1 M:B_HXB2R 150 (+150)
Human immunodeficiency virus 1 127 (+127)
Onchocerca volvulus 122 (+122)
Candida albicans 93 (+93)
NCBITaxon:1322345 91 (+91)
NCBITaxon:387139 91 (+91)
Staphylococcus aureus 90 (+90)
Bacillus cereus ATCC 14579 85 (+85)
Hepatitis C virus subtype 2a 65 (+65)
Salmonella enterica subsp. enterica serovar Typhi 65 (+65)
Bacillus megaterium 36 (+36)
Escherichia coli K-12 27 (+27)
Other 26 (0)
NCBITaxon:536056 25 (+25)
Streptococcus pneumoniae 25 (+25)
organism 24 (0)
Human alphaherpesvirus 2 22 (+22)
NCBITaxon:70865 14 (+14)
NCBITaxon:1086030 13 (+13)
Jaagsiekte sheep retrovirus 13 (+13)
Sindbis virus 12 (+12)
Mycobacterium bovis BCG 8 (+8)
NCBITaxon:176281 5 (+5)
Escherichia coli UTI89 4 (+4)
Human adenovirus 5 3 (+3)
NCBITaxon:1392869 2 (+2)
Serratia marcescens 1 (+1)
Hepatitis B virus 1 (+1)
Mus musculus domesticus 0 (-1026)

Gene Phenotype Associations By Taxa

Production Query

Dev Query

species count
Total 625917 (-96796)
Mus musculus 212409 (+10571)
Homo sapiens 148469 (+17495)
Caenorhabditis elegans 75422 (+21559)
Saccharomyces cerevisiae S288C 68224 (-6)
Danio rerio 56276 (-393)
Drosophila melanogaster 49114 (-146961)
organism 10801 (+4742)
Rattus norvegicus 468 (+7)
Canis lupus familiaris 460 (-16)
Drosophila hydei 452 (+452)
Drosophila subobscura 373 (+373)
Drosophila virilis 337 (+337)
Drosophila ananassae 246 (+246)
Drosophila simulans 204 (+204)
Drosophila pseudoobscura pseudoobscura 203 (+203)
Drosophila willistoni 186 (+186)
Bos taurus 160 (-3)
NCBITaxon:7257 153 (+153)
Drosophila funebris 132 (+132)
Felis catus 128 (-4)
NCBITaxon:30019 124 (+124)
NCBITaxon:40372 118 (+118)
NCBITaxon:30033 82 (+82)
NCBITaxon:95109 82 (+82)
Drosophila immigrans 72 (+72)
NCBITaxon:7300 69 (+69)
NCBITaxon:7246 63 (+63)
Vaccinia virus WR 62 (+62)
NCBITaxon:30042 56 (+56)
Drosophila buzzatii 55 (+55)
Ovis aries 55 (-2)
Drosophila mauritiana 52 (+52)
Drosophila paulistorum 49 (+49)
Drosophila miranda 43 (+43)
Mycobacterium tuberculosis H37Rv 40 (+40)
Drosophila littoralis 34 (+34)
NCBITaxon:7218 33 (+33)
Onchocerca volvulus 32 (+32)
Equus caballus 31 (0)
Sus scrofa 30 (-1)
Drosophila ambigua 27 (+27)
Hepacivirus C 27 (+27)
Human alphaherpesvirus 1 27 (+27)
NCBITaxon:193351 22 (+22)
Human alphaherpesvirus 2 19 (+19)
Gallus gallus 19 (0)
Capra hircus 17 (-1)
Phoenicopterus ruber 17 (0)
NCBITaxon:125945 15 (+15)
NCBITaxon:76712 14 (+14)
Drosophila persimilis 14 (+14)
NCBITaxon:7282 13 (+13)
NCBITaxon:7283 13 (+13)
Drosophila mojavensis 12 (+12)
NCBITaxon:64960 11 (+11)
Drosophila auraria 11 (+11)
Oryctolagus cuniculus 10 (0)
Mustela putorius furo 10 (0)
NCBITaxon:46794 10 (+10)
Drosophila sechellia 9 (+9)
Vaccinia virus 7 (+7)
NCBITaxon:30043 7 (+7)
NCBITaxon:169138 7 (+7)
NCBITaxon:47314 6 (+6)
NCBITaxon:42026 6 (+6)
NCBITaxon:161732 6 (+6)
Human rhinovirus B3 6 (+6)
Simian virus 40 6 (+6)
NCBITaxon:1322345 5 (+5)
Human immunodeficiency virus 1 5 (+5)
NCBITaxon:40844 4 (+4)
NCBITaxon:30028 4 (+4)
Neovison vison 4 (0)
Macaca mulatta 4 (0)
NCBITaxon:69217 4 (+4)
NCBITaxon:46822 4 (+4)
NCBITaxon:7252 3 (+3)
Human T-cell lymphotrophic virus type 1 (strain ATK) 3 (+3)
Oryzias latipes 3 (-1)
Drosophila pseudoobscura bogotana 3 (+3)
Mesocricetus auratus 3 (0)
Meleagris gallopavo 3 (0)
Drosophila equinoxialis 3 (+3)
NCBITaxon:198721 3 (+3)
NCBITaxon:30036 3 (+3)
NCBITaxon:218680 3 (+3)
Bacillus megaterium 3 (+3)
Sindbis virus 3 (+3)
Drosophila takahashii 3 (+3)
NCBITaxon:94111 3 (+3)
NCBITaxon:134002 2 (+2)
NCBITaxon:7270 2 (+2)
Vulpes vulpes 2 (0)
NCBITaxon:133981 2 (+2)
NCBITaxon:141217 2 (+2)
Scaptodrosophila lebanonensis 2 (+2)
Drosophila madeirensis 2 (+2)
Drosophila eugracilis 2 (+2)
NCBITaxon:7291 2 (+2)
NCBITaxon:30023 2 (+2)
NCBITaxon:195057 2 (+2)
NCBITaxon:30029 2 (+2)
NCBITaxon:76946 2 (+2)
Drosophila erecta 2 (+2)
NCBITaxon:133978 2 (+2)
NCBITaxon:42062 2 (+2)
NCBITaxon:7271 2 (+2)
Drosophila arizonae 2 (+2)
Bubalus bubalis 2 (0)
Hepatitis C virus subtype 2a 1 (+1)
Mammuthus primigenius 1 (0)
Dengue virus group 1 (+1)
NCBITaxon:1392869 1 (+1)
NCBITaxon:7284 1 (+1)
NCBITaxon:27706 1 (0)
NCBITaxon:66368 1 (+1)
NCBITaxon:43597 1 (0)
Drosophila lutescens 1 (+1)
Ursus americanus 1 (0)
Mycobacterium bovis BCG 1 (+1)
NCBITaxon:61402 1 (0)
NCBITaxon:38666 1 (0)
Human adenovirus 5 1 (+1)
NCBITaxon:70340 1 (0)
NCBITaxon:30056 1 (+1)
NCBITaxon:68352 1 (0)
NCBITaxon:32536 1 (0)
Coturnix japonica 1 (0)
NCBITaxon:57910 1 (+1)
NCBITaxon:103846 1 (+1)
NCBITaxon:7297 1 (+1)
Vulpes lagopus 1 (0)
Sciurus carolinensis 1 (0)
NCBITaxon:7279 1 (+1)
HIV-1 M:B_HXB2R 1 (+1)
Peromyscus polionotus 1 (0)
Numida meleagris 1 (0)
NCBITaxon:9690 1 (0)
NCBITaxon:7231 1 (+1)
NCBITaxon:87177 1 (0)
Escherichia coli K-12 1 (+1)
Bos grunniens 1 (0)
Drosophila yakuba 1 (+1)
NCBITaxon:310057 1 (+1)
Panthera tigris tigris 1 (0)
Mus musculus domesticus 0 (-7540)
Other 0 (0)

Disease Phenotype Associations By Source

Production Query

Dev Query

species count
Total 155589 (+9569)
https://data.monarchinitiative.org/ttl/hpoa.ttl 153546 (+9604)
https://data.monarchinitiative.org/ttl/monarch.ttl 1768 (-36)
https://data.monarchinitiative.org/ttl/omia.ttl 221 (0)
https://data.monarchinitiative.org/ttl/omim.ttl 2 (+2)
Other 0 (0)

Gene Disease Causal Associations By Source

Production Query

Dev Query

species count
Total 10318 (+186)
https://data.monarchinitiative.org/ttl/orphanet.ttl 6099 (+64)
https://data.monarchinitiative.org/ttl/clinvarxml_alpha.nt 5573 (+5573)
https://data.monarchinitiative.org/ttl/kegg.ttl 5311 (+3)
https://data.monarchinitiative.org/ttl/omim.ttl 5229 (-5)
https://data.monarchinitiative.org/ttl/ctd.ttl 4924 (-2)
https://data.monarchinitiative.org/ttl/omia.ttl 725 (0)
https://data.monarchinitiative.org/ttl/mgi.ttl 11 (0)
https://data.monarchinitiative.org/ttl/gwascatalog.ttl 8 (+7)
https://data.monarchinitiative.org/ttl/mgi_slim.ttl 7 (+1)
https://data.monarchinitiative.org/ttl/mmrrc.ttl 3 (0)
https://data.monarchinitiative.org/ttl/impc.ttl 1 (0)
Other 0 (0)
https://data.monarchinitiative.org/ttl/clinvar.ttl 0 (-5512)

Gene Phenotype Associations By Source

Production Query

Dev Query

source count
Total 625917 (-96796)
https://data.monarchinitiative.org/ttl/mgi_slim.ttl 209155 (+3385)
https://data.monarchinitiative.org/ttl/hpoa.ttl 101085 (-29869)
https://data.monarchinitiative.org/ttl/clinvarxml_alpha.nt 96103 (+96103)
https://data.monarchinitiative.org/ttl/omim.ttl 86176 (+7582)
https://data.monarchinitiative.org/ttl/wormbase.ttl 75422 (+21705)
https://data.monarchinitiative.org/ttl/sgd.ttl 68224 (0)
https://data.monarchinitiative.org/ttl/zfinslim.ttl 62487 (+9053)
https://data.monarchinitiative.org/ttl/flybase.ttl 57210 (-138865)
https://data.monarchinitiative.org/ttl/gwascatalog.ttl 48145 (+48140)
https://data.monarchinitiative.org/ttl/impc.ttl 17417 (0)
https://data.monarchinitiative.org/ttl/mgi.ttl 16087 (0)
https://data.monarchinitiative.org/ttl/coriell.ttl 7125 (+260)
https://data.monarchinitiative.org/ttl/mmrrc.ttl 5149 (+35)
https://data.monarchinitiative.org/ttl/omia.ttl 981 (-28)
https://data.monarchinitiative.org/ttl/monarch.ttl 960 (-28)
https://data.monarchinitiative.org/ttl/rgd.ttl 463 (+7)
Other 0 (0)
https://data.monarchinitiative.org/ttl/orphanet.ttl 0 (-97786)
https://data.monarchinitiative.org/ttl/zfin.ttl 0 (-8943)
https://data.monarchinitiative.org/ttl/go.ttl 0 (-9775)
https://data.monarchinitiative.org/ttl/clinvar.ttl 0 (-89034)

Gene Variant Associations By Source

Production Query

Dev Query

source count
Total 1453373 (-281099)
https://data.monarchinitiative.org/ttl/mgi.ttl 838709 (+309)
https://data.monarchinitiative.org/ttl/flybase.ttl 192674 (-336480)
https://data.monarchinitiative.org/ttl/clinvarxml_alpha.nt 129085 (+129085)
https://data.monarchinitiative.org/ttl/wormbase.ttl 114565 (-1406)
https://data.monarchinitiative.org/ttl/gwascatalog.ttl 60397 (+60397)
https://data.monarchinitiative.org/ttl/mmrrc.ttl 48904 (+1456)
https://data.monarchinitiative.org/ttl/zfin.ttl 40755 (+994)
https://data.monarchinitiative.org/ttl/omim.ttl 27961 (+486)
https://data.monarchinitiative.org/ttl/animalqtldb.ttl 23510 (0)
https://data.monarchinitiative.org/ttl/impc.ttl 12948 (0)
https://data.monarchinitiative.org/ttl/go.ttl 5111 (+38)
Other 0 (0)
https://data.monarchinitiative.org/ttl/udp.ttl 0 (-3)
https://data.monarchinitiative.org/ttl/clinvar.ttl 0 (-134239)

Case Disease By Source

Production Query

Dev Query

source count
Total 11329 (+22)
https://data.monarchinitiative.org/ttl/coriell.ttl 11291 (+22)
https://data.monarchinitiative.org/ttl/udp.ttl 38 (0)
Other 0 (0)

Disease Phenotype Associations By Taxa

Production Query

Dev Query

species count
Total 155589 (+9569)
Other 145196 (-808)
Homo sapiens 10393 (+10377)

Gene Anatomy By Taxa

Production Query

Dev Query

source count
Total 1862216 (+3745)
Mus musculus 550793 (+120807)
Homo sapiens 531422 (+3412)
Danio rerio 367207 (-20)
Drosophila melanogaster 197525 (-216)
Rattus norvegicus 142624 (0)
Caenorhabditis elegans 71709 (+1)
Hepacivirus C 100 (+100)
Human immunodeficiency virus 1 60 (+60)
Escherichia coli 40 (+40)
Human alphaherpesvirus 1 40 (+40)
Simian virus 40 40 (+40)
Human alphaherpesvirus 2 20 (+20)
NCBITaxon:1086030 20 (+20)
Candida albicans 20 (+20)
NCBITaxon:536056 20 (+20)
Dengue virus group 20 (+20)
Bacillus megaterium 20 (+20)
Jaagsiekte sheep retrovirus 20 (+20)
Vaccinia virus 20 (+20)
Helicobacter pylori 20 (+20)
NCBITaxon:176281 20 (+20)
Hepatitis C virus subtype 2a 20 (+20)
NCBITaxon:1322345 20 (+20)
Sindbis virus 20 (+20)
HIV-1 M:B_HXB2R 20 (+20)
Salmonella enterica subsp. enterica serovar Typhi 20 (+20)
Vaccinia virus WR 20 (+20)
NCBITaxon:1392869 20 (+20)
Human rhinovirus B3 20 (+20)
Human T-cell lymphotrophic virus type 1 (strain ATK) 20 (+20)
Escherichia coli UTI89 20 (+20)
Onchocerca volvulus 20 (+20)
Mycobacterium tuberculosis H37Rv 20 (+20)
Human adenovirus 5 20 (+20)
Bacillus cereus ATCC 14579 20 (+20)
Mycobacterium bovis BCG 20 (+20)
Mycobacterium tuberculosis 20 (+20)
Escherichia coli K-12 20 (+20)
Fusarium oxysporum species complex 20 (+20)
Hepatitis B virus 20 (+20)
Staphylococcus aureus 20 (+20)
NCBITaxon:387139 20 (+20)
Serratia marcescens 15 (+15)
NCBITaxon:70865 13 (+13)
Streptococcus pneumoniae 8 (+8)
Other 0 (0)
Mus musculus domesticus 0 (-121175)

Pathway Phenotype By Source

Production Query

Dev Query

source count
Total 96965 (+1263)
https://data.monarchinitiative.org/ttl/hpoa.ttl 89013 (+2803)
https://data.monarchinitiative.org/ttl/coriell.ttl 89013 (+2803)
https://data.monarchinitiative.org/ttl/omim.ttl 88944 (+2734)
https://data.monarchinitiative.org/ttl/ctd.ttl 86893 (+2725)
https://data.monarchinitiative.org/ttl/reactome.ttl 33356 (-529)
https://data.monarchinitiative.org/ttl/animalqtldb.ttl 7952 (-1540)
https://data.monarchinitiative.org/ttl/gwascatalog.ttl 7493 (+7493)
https://data.monarchinitiative.org/ttl/orphanet.ttl 884 (+468)
Other 0 (0)

Variant Genotype Associations By Taxa

Production Query

Dev Query

species count
Total 823277 (-862292)
Mus musculus 652284 (+6333)
Danio rerio 158068 (+4706)
organism 7091 (-37)
Homo sapiens 4528 (+3)
sequence_alteration 1235 (+1235)
NCBITaxon:10102 20 (0)
Mus musculus molossinus 15 (0)
Mus musculus bactrianus 7 (0)
Mus spretus 6 (0)
Mus musculus musculus 5 (-6)
Rattus norvegicus 4 (0)
Mus 4 (0)
Mus musculus castaneus 4 (0)
Macaca mulatta 2 (0)
Bos taurus 1 (0)
Saguinus labiatus 1 (0)
Plecturocebus moloch 1 (0)
Cricetulus griseus 1 (0)
Other 0 (0)
Drosophila melanogaster 0 (-873495)
Mus musculus domesticus 0 (-1031)

Genotype Phenotype Associations By Taxa

Production Query

Dev Query

species count
Total 560603 (-400509)
Mus musculus 358523 (+5677)
Danio rerio 107589 (+5660)
Homo sapiens 75404 (+1000)
organism 17512 (+461)
sequence_alteration 1520 (+1520)
Mus musculus molossinus 13 (0)
NCBITaxon:477815 12 (0)
Mus musculus castaneus 12 (0)
NCBITaxon:10102 8 (0)
Mus 4 (0)
Mus musculus musculus 3 (-11)
Mus spretus 2 (0)
Mus musculus bactrianus 1 (0)
Drosophila melanogaster 0 (-412276)
Other 0 (0)
Mus musculus domesticus 0 (-2540)

Publication Gene By Source

Production Query

Dev Query

source count
Total 5091225 (-1191623)
https://data.monarchinitiative.org/ttl/ncbigene.ttl 4173721 (+128685)
https://data.monarchinitiative.org/ttl/go.ttl 1038389 (+229059)
https://data.monarchinitiative.org/ttl/flybase.ttl 96829 (-1892315)
https://data.monarchinitiative.org/ttl/sgd.ttl 86732 (0)
https://data.monarchinitiative.org/ttl/zfin.ttl 70305 (-30)
https://data.monarchinitiative.org/ttl/gwascatalog.ttl 59809 (+58900)
https://data.monarchinitiative.org/ttl/mgi.ttl 57835 (+46665)
https://data.monarchinitiative.org/ttl/clinvarxml_alpha.nt 52572 (+52572)
https://data.monarchinitiative.org/ttl/wormbase.ttl 36448 (+7921)
https://data.monarchinitiative.org/ttl/mgi_slim.ttl 31951 (+241)
https://data.monarchinitiative.org/ttl/omim.ttl 28418 (+805)
https://data.monarchinitiative.org/ttl/hgnc.ttl 27893 (+271)
https://data.monarchinitiative.org/ttl/ctd.ttl 24111 (+428)
https://data.monarchinitiative.org/ttl/zfinslim.ttl 13172 (+581)
https://data.monarchinitiative.org/ttl/mmrrc.ttl 7503 (+5266)
https://data.monarchinitiative.org/ttl/impc.ttl 4630 (+4491)
https://data.monarchinitiative.org/ttl/animalqtldb.ttl 4613 (0)
https://data.monarchinitiative.org/ttl/rgd.ttl 176 (+3)
https://data.monarchinitiative.org/ttl/hpoa.ttl 4 (0)
Other 0 (0)
https://data.monarchinitiative.org/ttl/clinvar.ttl 0 (-51789)
https://data.monarchinitiative.org/ttl/biogrid.ttl 0 (-317771)

Variant Disease Associations By Source

Production Query

Dev Query

source count
Total 112667 (+8034)
https://data.monarchinitiative.org/ttl/clinvarxml_alpha.nt 77660 (+77660)
https://data.monarchinitiative.org/ttl/gwascatalog.ttl 32750 (+4026)
https://data.monarchinitiative.org/ttl/coriell.ttl 1025 (0)
https://data.monarchinitiative.org/ttl/omim.ttl 1011 (-25)
https://data.monarchinitiative.org/ttl/udp.ttl 110 (0)
https://data.monarchinitiative.org/ttl/ctd.ttl 43 (0)
https://data.monarchinitiative.org/ttl/hpoa.ttl 35 (+35)
https://data.monarchinitiative.org/ttl/mgi.ttl 30 (0)
https://data.monarchinitiative.org/ttl/mgi_slim.ttl 3 (0)
https://data.monarchinitiative.org/ttl/orphanet.ttl 3 (0)
https://data.monarchinitiative.org/ttl/impc.ttl 1 (0)
https://data.monarchinitiative.org/ttl/clinvar.ttl 0 (-73667)
Other 0 (0)

Gene Variant Associations By Taxa

Production Query

Dev Query

species count
Total 1453373 (-281099)
Mus musculus 861071 (+35250)
Homo sapiens 219678 (+49157)
Drosophila melanogaster 181505 (-288902)
Caenorhabditis elegans 114726 (-1427)
Danio rerio 38620 (+982)
Bos taurus 16962 (-62)
organism 9774 (+5917)
Sus scrofa 3353 (-27)
Gallus gallus 1687 (-25)
Drosophila ananassae 601 (-10)
Drosophila virilis 571 (-6)
Drosophila subobscura 536 (0)
Drosophila hydei 523 (-15)
Drosophila simulans 433 (-6)
Drosophila pseudoobscura pseudoobscura 330 (0)
Equus caballus 235 (-4)
Drosophila willistoni 206 (0)
Rattus norvegicus 180 (-76)
Drosophila funebris 177 (-2)
NCBITaxon:40372 149 (0)
NCBITaxon:30033 123 (0)
Drosophila mauritiana 122 (0)
NCBITaxon:7257 122 (0)
Drosophila buzzatii 121 (-2)
NCBITaxon:95109 95 (0)
Drosophila immigrans 91 (0)
NCBITaxon:30019 88 (0)
Drosophila miranda 88 (0)
NCBITaxon:7246 58 (0)
NCBITaxon:7300 53 (0)
NCBITaxon:76712 52 (0)
NCBITaxon:7231 50 (0)
Human alphaherpesvirus 2 45 (+45)
Drosophila mojavensis 44 (0)
Drosophila affinidisjuncta 42 (0)
Drosophila teissieri 41 (0)
NCBITaxon:30042 39 (0)
Drosophila persimilis 39 (0)
Hepacivirus C 37 (+37)
Drosophila littoralis 35 (0)
Drosophila paulistorum 32 (0)
Vaccinia virus WR 32 (+32)
Onchocerca volvulus 30 (+30)
Drosophila takahashii 30 (0)
Drosophila lutescens 27 (0)
NCBITaxon:7218 26 (0)
Drosophila arizonae 26 (0)
NCBITaxon:111875 24 (0)
Mycobacterium tuberculosis H37Rv 24 (+24)
NCBITaxon:60717 24 (0)
Drosophila ambigua 19 (0)
NCBITaxon:42026 18 (0)
NCBITaxon:7283 18 (0)
NCBITaxon:193351 17 (0)
NCBITaxon:125945 14 (0)
Drosophila auraria 14 (0)
NCBITaxon:7282 14 (0)
Drosophila sechellia 13 (0)
NCBITaxon:64960 12 (0)
Drosophila hawaiiensis 12 (0)
NCBITaxon:1322345 10 (+10)
Human alphaherpesvirus 1 10 (-33)
NCBITaxon:30036 9 (0)
Human rhinovirus B3 9 (+9)
Drosophila yakuba 9 (0)
Human immunodeficiency virus 1 8 (+2)
NCBITaxon:195057 8 (0)
NCBITaxon:47314 8 (0)
Simian virus 40 8 (+8)
NCBITaxon:161732 8 (0)
Mycobacterium bovis BCG 7 (+7)
Ovis aries 7 (-4)
Scaptodrosophila lebanonensis 7 (+1)
NCBITaxon:94111 6 (0)
NCBITaxon:7291 6 (0)
Drosophila grimshawi 6 (0)
NCBITaxon:46794 6 (0)
NCBITaxon:30043 6 (0)
Vaccinia virus 5 (+4)
NCBITaxon:76946 5 (0)
Human T-cell lymphotrophic virus type 1 (strain ATK) 5 (+5)
NCBITaxon:103846 5 (0)
NCBITaxon:77771 5 (+5)
Drosophila eugracilis 4 (0)
NCBITaxon:30023 4 (0)
Canis lupus familiaris 4 (-4)
NCBITaxon:169138 4 (0)
Human adenovirus 5 3 (-2)
NCBITaxon:218680 3 (0)
NCBITaxon:7249 3 (0)
NCBITaxon:69217 3 (0)
NCBITaxon:40844 2 (0)
Xenopus (Silurana) tropicalis 2 (0)
NCBITaxon:30056 2 (0)
NCBITaxon:7297 2 (0)
Drosophila madeirensis 2 (0)
NCBITaxon:42062 2 (0)
Pan troglodytes 2 (0)
NCBITaxon:30028 2 (0)
Drosophila erecta 2 (0)
Drosophila pseudoobscura bogotana 2 (0)
Drosophila equinoxialis 2 (0)
Bacillus megaterium 2 (+2)
NCBITaxon:57910 2 (0)
Hepatitis C virus subtype 2a 2 (+2)
NCBITaxon:7279 2 (0)
NCBITaxon:46822 2 (0)
NCBITaxon:134002 1 (0)
NCBITaxon:133981 1 (0)
Drosophila orena 1 (0)
NCBITaxon:198721 1 (0)
NCBITaxon:7248 1 (0)
Sindbis virus 1 (-1)
HIV-1 M:B_HXB2R 1 (+1)
NCBITaxon:7252 1 (0)
NCBITaxon:7271 1 (0)
NCBITaxon:7270 1 (0)
NCBITaxon:310057 1 (0)
Arabidopsis thaliana 1 (-7)
Dengue virus group 1 (+1)
NCBITaxon:1392869 1 (+1)
NCBITaxon:7284 1 (0)
NCBITaxon:66368 1 (0)
NCBITaxon:141217 1 (0)
Drosophila borealis 1 (0)
NCBITaxon:30029 1 (0)
Escherichia coli K-12 1 (+1)
Saccharomyces cerevisiae S288C 1 (0)
NCBITaxon:133978 1 (0)
Guillardia theta 0 (-4)
Corynephage beta 0 (-13)
NCBITaxon:82678 0 (-2)
NCBITaxon:35525 0 (-2)
NCBITaxon:161601 0 (-1)
Human T-cell leukemia virus type I 0 (-1)
Xenopus laevis 0 (-33)
Rhodococcus sp. 0 (-4)
Brevundimonas diminuta 0 (-1)
Saccharomyces cerevisiae 0 (-26882)
NCBITaxon:1162220 0 (-1)
BNODE:fc3f087ca372cb4d3a9 0 (-14)
Tribolium castaneum 0 (-24)
NCBITaxon:496660 0 (-4)
Clostridium tetani 0 (-19)
NCBITaxon:1051066 0 (-1)
Glossina morsitans 0 (-3)
NCBITaxon:35572 0 (-1)
Escherichia coli 0 (-14337)
NCBITaxon:191210 0 (-2)
Conus marmoreus 0 (-1)
Glycine max 0 (-2)
NCBITaxon:6136 0 (-6)
Bacillus subtilis 0 (-3)
Helicobacter pylori 0 (-2)
NCBITaxon:7119 0 (-2)
NCBITaxon:196280 0 (-3)
Bradyrhizobium sp. 0 (-7)
Heteractis crispa 0 (-2)
NCBITaxon:3821 0 (-1)
Beet yellows virus 0 (-1)
Mesocricetus auratus 0 (-5)
NCBITaxon:12227 0 (-11)
Blattella germanica 0 (-2)
NCBITaxon:301887 0 (-1)
Nodamura virus 0 (-1)
NCBITaxon:7111 0 (-8)
Ciona intestinalis 0 (-4)
Staphylococcus aureus 0 (-3)
Penaeus merguiensis 0 (-1)
NCBITaxon:12470 0 (-12)
Musca domestica 0 (-13)
Campoletis sonorensis ichnovirus 0 (-2)
NCBITaxon:39722 0 (-1)
Zygosaccharomyces bailii 0 (-3)
BNODE:e66d689dd86a07aea60 0 (-3)
Vibrio parahaemolyticus 0 (-3)
BNODE:e3f956b320a9fec1cf3 0 (-1)
NCBITaxon:28456 0 (-4)
Oryza sativa 0 (-2)
Deinococcus radiodurans 0 (-2)
Euglena gracilis 0 (-3)
NCBITaxon:32392 0 (-1)
Manduca sexta 0 (-1)
NCBITaxon:118641 0 (-1)
Megaselia scalaris 0 (-1)
Hadronyche versuta 0 (-2)
NCBITaxon:7740 0 (-4)
Other 0 (0)
Aequorea victoria 0 (-3561)
Cricket paralysis virus 0 (-2)
Cupiennius salei 0 (-8)
NCBITaxon:703 0 (-1)
Streptomyces hygroscopicus 0 (-1)
NCBITaxon:80765 0 (-3)
Limulus polyphemus 0 (-2)
Aeromonas salmonicida 0 (-2)
BNODE:13446b3196cf19c664c 0 (-5)
Bacillus halodurans 0 (-2)
Salmonella enterica subsp. enterica serovar Typhimurium 0 (-6)
Bungarus multicinctus 0 (-2)
Bacillus anthracis 0 (-3)
NCBITaxon:12022 0 (-4)
Halocynthia roretzi 0 (-1)
Escherichia virus P1 0 (-17)
NCBITaxon:56459 0 (-1)
NCBITaxon:109461 0 (-2)
Pediculus humanus 0 (-1)
NCBITaxon:55100 0 (-3)
NCBITaxon:35743 0 (-1)
NCBITaxon:51655 0 (-1)
NCBITaxon:95512 0 (-4)
NCBITaxon:45264 0 (-2)
NCBITaxon:418985 0 (-3)
NCBITaxon:1962953 0 (-1)
Ixodes scapularis 0 (-1)
Ceratitis capitata 0 (-5)
Hemitripterus americanus 0 (-1)
BNODE:f8141fdf82ae439afe6 0 (-3)
Oryctolagus cuniculus 0 (-11)
NCBITaxon:4957 0 (-3)
NCBITaxon:88209 0 (-2)
Schistosoma japonicum 0 (-2)
NCBITaxon:499226 0 (-1)
Autographa californica nucleopolyhedrovirus 0 (-14)
Culex pipiens 0 (-3)
NCBITaxon:32644 0 (-57)
BNODE:b1a448feb24de46088b 0 (-1)
Vibrio cholerae 0 (-3)
Toxoplasma gondii 0 (-3)
Spodoptera frugiperda ascovirus 1a 0 (-3)
NCBITaxon:11913 0 (-1)
Chlamydomonas reinhardtii 0 (-47)
NCBITaxon:12232 0 (-1)
Listeria monocytogenes 0 (-5)
NCBITaxon:12287 0 (-8)
Armoracia rusticana 0 (-1)
Trichoplax adhaerens 0 (-2)
Macaca mulatta polyomavirus 1 0 (-5)
Lucilia cuprina 0 (-3)
NCBITaxon:5530 0 (-2)
Arachis hypogaea 0 (-1)
Bombyx mori 0 (-18)
Neurospora crassa 0 (-94)
NCBITaxon:38358 0 (-6)
Triticum aestivum 0 (-2)
NCBITaxon:7010 0 (-4)
NCBITaxon:2389 0 (-15)
NCBITaxon:2138 0 (-3)
NCBITaxon:1649241 0 (-1)
NCBITaxon:2014434 0 (-1)
Providencia stuartii 0 (-2)
NCBITaxon:108931 0 (-2)
Pseudomonas aeruginosa 0 (-1)
NCBITaxon:2387 0 (-13)
Bordetella pertussis 0 (-5)
NCBITaxon:139456 0 (-1)
Zygosaccharomyces rouxii 0 (-4)
Anopheles funestus 0 (-4)
Turnip crinkle virus 0 (-1)
Human T-lymphotropic virus 2 0 (-1)
Mus musculus domesticus 0 (-35507)
NCBITaxon:148603 0 (-6)
Clavularia sp. 0 (-2)
Escherichia virus Lambda 0 (-2)
Enterobacteria phage T7 0 (-9)
BNODE:eaba42a506034628afd 0 (-3)
NCBITaxon:7120 0 (-1)
NCBITaxon:46758 0 (-8)
Artemia franciscana 0 (-6)
Ricinus communis 0 (-7)
Drosophila C virus 0 (-4)
NCBITaxon:45455 0 (-4)
NCBITaxon:62873 0 (-2)
Apis mellifera 0 (-13)
Hydra vulgaris 0 (-3)
NCBITaxon:32630 0 (-197)
NCBITaxon:7038 0 (-2)
NCBITaxon:1208342 0 (-2)
Cucurbit aphid-borne yellows virus 0 (-1)
NCBITaxon:955 0 (-5)
BNODE:a35efa09e0fb254e16a 0 (-14)
NCBITaxon:7007 0 (-1)
Aedes aegypti 0 (-8)
NCBITaxon:8204 0 (-5)
Monosiga brevicollis 0 (-3)
Acyrthosiphon pisum 0 (-2)
Human papillomavirus type 18 0 (-2)
BNODE:1f58a0779e93c2ed4d2 0 (-1)
Anopheles gambiae 0 (-80)
NCBITaxon:4808 0 (-1)
Entacmaea quadricolor 0 (-21)
BNODE:bb2cf0ff025d4622cf5 0 (-16)
Rhodobacter sphaeroides 0 (-1)
Amphimedon queenslandica 0 (-2)
NCBITaxon:46745 0 (-1)
NCBITaxon:658227 0 (-24)
Potato virus X 0 (-1)
Schistocerca americana 0 (-2)
Photinus pyralis 0 (-143)
Rhodopseudomonas palustris 0 (-2)
Human mastadenovirus C 0 (-5)
NCBITaxon:191766 0 (-1)
Kluyveromyces lactis 0 (-7)
Streptococcus pyogenes 0 (-27)
Human betaherpesvirus 5 0 (-2)
Cricetulus griseus 0 (-1)
NCBITaxon:55084 0 (-1)
Tomato bushy stunt virus 0 (-4)
NCBITaxon:10456 0 (-1)
Enterococcus faecalis 0 (-1)
Peanut clump virus 0 (-1)
Heliothis virescens 0 (-3)
NCBITaxon:491304 0 (-1)
Danaus plexippus 0 (-6)
Natronomonas pharaonis 0 (-7)
NCBITaxon:11309 0 (-3)
Pseudopleuronectes americanus 0 (-3)
NCBITaxon:86600 0 (-349)

Variant Phenotype Associations By Source

Production Query

Dev Query

source count
Total 3572325 (+61084)
https://data.monarchinitiative.org/ttl/hpoa.ttl 2040353 (+151879)
https://data.monarchinitiative.org/ttl/clinvarxml_alpha.nt 1955982 (+1955982)
https://data.monarchinitiative.org/ttl/mgi.ttl 734794 (-3761)
https://data.monarchinitiative.org/ttl/animalqtldb.ttl 213937 (+225)
https://data.monarchinitiative.org/ttl/wormbase.ttl 193003 (+72976)
https://data.monarchinitiative.org/ttl/gwascatalog.ttl 166000 (+100727)
https://data.monarchinitiative.org/ttl/zfin.ttl 164628 (+24415)
https://data.monarchinitiative.org/ttl/flybase.ttl 116655 (-252958)
https://data.monarchinitiative.org/ttl/impc.ttl 58250 (+240)
https://data.monarchinitiative.org/ttl/mgi_slim.ttl 33512 (+414)
https://data.monarchinitiative.org/ttl/omim.ttl 8259 (+213)
https://data.monarchinitiative.org/ttl/ctd.ttl 560 (0)
https://data.monarchinitiative.org/ttl/sgd.ttl 23 (0)
https://data.monarchinitiative.org/ttl/orphanet.ttl 23 (0)
https://data.monarchinitiative.org/ttl/coriell.ttl 3 (0)
Other 0 (0)
https://data.monarchinitiative.org/ttl/clinvar.ttl 0 (-1816735)
https://data.monarchinitiative.org/ttl/go.ttl 0 (-50354)

Publication Genotype By Source

Production Query

Dev Query

source count
Total 127606 (-201417)
https://data.monarchinitiative.org/ttl/mgi.ttl 79428 (+79428)
https://data.monarchinitiative.org/ttl/zfin.ttl 28643 (-262)
https://data.monarchinitiative.org/ttl/coriell.ttl 10376 (+76)
https://data.monarchinitiative.org/ttl/go.ttl 9159 (+149)
Other 0 (0)
https://data.monarchinitiative.org/ttl/flybase.ttl 0 (-280808)

Publication Variant By Source

Production Query

Dev Query

source count
Total 5403093 (-2748394)
https://data.monarchinitiative.org/ttl/ncbigene.ttl 4297290 (+128422)
https://data.monarchinitiative.org/ttl/animalqtldb.ttl 250257 (+785)
https://data.monarchinitiative.org/ttl/mgi.ttl 155812 (+155808)
https://data.monarchinitiative.org/ttl/clinvarxml_alpha.nt 154419 (+154419)
https://data.monarchinitiative.org/ttl/flybase.ttl 151798 (-3531815)
https://data.monarchinitiative.org/ttl/gwascatalog.ttl 111869 (+29907)
https://data.monarchinitiative.org/ttl/wormbase.ttl 107268 (+43753)
https://data.monarchinitiative.org/ttl/zfin.ttl 68619 (+669)
https://data.monarchinitiative.org/ttl/omim.ttl 43452 (+628)
https://data.monarchinitiative.org/ttl/coriell.ttl 38325 (+212)
https://data.monarchinitiative.org/ttl/hgnc.ttl 32095 (+250)
https://data.monarchinitiative.org/ttl/go.ttl 29153 (+836)
https://data.monarchinitiative.org/ttl/mgi_slim.ttl 7603 (+53)
https://data.monarchinitiative.org/ttl/kegg.ttl 6170 (+123)
https://data.monarchinitiative.org/ttl/omia.ttl 5191 (0)
https://data.monarchinitiative.org/ttl/impc.ttl 4580 (+4580)
https://data.monarchinitiative.org/ttl/mmrrc.ttl 1606 (-19)
https://data.monarchinitiative.org/ttl/ctd.ttl 1399 (+1359)
https://data.monarchinitiative.org/ttl/hpoa.ttl 120 (+120)
https://data.monarchinitiative.org/ttl/sgd.ttl 29 (0)
Other 0 (0)
https://data.monarchinitiative.org/ttl/clinvar.ttl 0 (-149825)
https://data.monarchinitiative.org/ttl/biogrid.ttl 0 (-520)

SciGraph Queries

Genes

Production Query

Dev Query

field count
genes 1829119 (-670739)

Genes in more than one taxa

Production Query

Dev Query

field count
request timeout 0

Genotypes

Production Query

Dev Query

field count
genotypes 334386 (-443425)

Disease Phenotype Mix-ups

Production Query

Dev Query

field count
disease 131 (+3)

Gene Variant Mix-ups

Production Query

Dev Query

field count
variant 5179 (-5)

Variant Loci

Production Query

Dev Query

field count
variants 863271 (-3819)

Sequence Features

Production Query

Dev Query

field count
features 7400101 (-1857408)

Reagent Targeted Gene

Production Query

Dev Query

field count
rtg 106171 (-138497)

Gene Disease Mix-ups

Production Query

Dev Query

field count
gene 114 (+114)

nodes with subClassOf cycles (depth 2)

Production Query

Dev Query

field count
node_count 0 (-1)

Number of edges connected to owl:Nothing

Production Query

Dev Query

field count
nothing 0 (0)

nodes with subClassOf cycles (depth 1)

Production Query

Dev Query

field count
node_count 1 (0)