Solr Queries

Gene Pathway By Source

Production Query

Dev Query

source count
Total 306921 (-9752)
https://data.monarchinitiative.org/ttl/reactome.ttl 204133 (-9888)
https://data.monarchinitiative.org/ttl/ctd.ttl 135636 (-31)
https://data.monarchinitiative.org/ttl/ensembl.ttl 37 (-658)
Other 0 (0)

Model Disease Associations By Taxa

Production Query

Dev Query

species count
Total 26369 (-99)
Homo sapiens 12010 (+30)
Mus musculus 7829 (+631)
Caenorhabditis elegans 3306 (+269)
Drosophila melanogaster 1207 (-594)
Danio rerio 961 (+53)
Carnivora 684 (0)
Ruminantia 144 (0)
organism 96 (-1)
Felidae 55 (0)
Equidae 34 (0)
sequence_alteration 18 (+18)
Suidae 5 (0)
Sus 5 (0)
Other 3 (+1)
Bos taurus 3 (0)
Gallus gallus 3 (0)
Bovidae 2 (0)
NCBITaxon:477815 2 (0)
Mus musculus castaneus 1 (0)
Viridiplantae 1 (0)
Mus musculus domesticus 0 (-504)
Mus musculus musculus 0 (-2)

Variant Phenotype Associations By Source

Production Query

Dev Query

source count
Total 3664724 (+153483)
https://data.monarchinitiative.org/ttl/hpoa.ttl 2045647 (+157173)
https://data.monarchinitiative.org/ttl/clinvar.nt 1961213 (+1961213)
https://data.monarchinitiative.org/ttl/mgi.ttl 749888 (+11333)
https://data.monarchinitiative.org/ttl/animalqtldb.ttl 213937 (+225)
https://data.monarchinitiative.org/ttl/wormbase.ttl 192990 (+72963)
https://data.monarchinitiative.org/ttl/zfin.ttl 174952 (+34739)
https://data.monarchinitiative.org/ttl/gwascatalog.ttl 166000 (+100727)
https://data.monarchinitiative.org/ttl/flybase.ttl 151559 (-218054)
https://data.monarchinitiative.org/ttl/impc.ttl 58498 (+488)
https://data.monarchinitiative.org/ttl/go.ttl 51105 (+751)
https://data.monarchinitiative.org/ttl/mgi_slim.ttl 33512 (+414)
https://data.monarchinitiative.org/ttl/omim.ttl 8259 (+213)
https://data.monarchinitiative.org/ttl/ctd.ttl 560 (0)
https://data.monarchinitiative.org/ttl/orphanet.ttl 23 (0)
https://data.monarchinitiative.org/ttl/sgd.ttl 23 (0)
https://data.monarchinitiative.org/ttl/coriell.ttl 3 (0)
Other 0 (0)
https://data.monarchinitiative.org/ttl/clinvar.ttl 0 (-1816735)

Case Genotype By Source

Production Query

Dev Query

source count
Total 3834 (+11)
https://data.monarchinitiative.org/ttl/coriell.ttl 3801 (+11)
https://data.monarchinitiative.org/ttl/udp.ttl 33 (0)
Other 0 (0)

Gene Anatomy By Taxa

Production Query

Dev Query

source count
Total 1862538 (+4067)
Mus musculus 550793 (+120807)
Homo sapiens 531837 (+3827)
Danio rerio 367207 (-20)
Drosophila melanogaster 197525 (-216)
Rattus norvegicus 142624 (0)
Caenorhabditis elegans 71709 (+1)
Escherichia coli 63 (+63)
Human immunodeficiency virus 1 60 (+60)
Hepacivirus C 60 (+60)
Human alphaherpesvirus 1 60 (+60)
Jaagsiekte sheep retrovirus 40 (+40)
Hepatitis C virus subtype 2a 40 (+40)
Dengue virus group 40 (+40)
Murine leukemia virus 20 (+20)
HIV-1 M:C_ETH2220 20 (+20)
Salmonella enterica subsp. enterica serovar Typhi 20 (+20)
NCBITaxon:1334565 20 (+20)
Candida albicans 20 (+20)
Candida parapsilosis 20 (+20)
Human alphaherpesvirus 2 20 (+20)
Yellow fever virus 20 (+20)
NCBITaxon:536056 20 (+20)
NCBITaxon:70865 20 (+20)
Simian virus 40 20 (+20)
Human respiratory syncytial virus B 20 (+20)
Salmonella 20 (+20)
Sindbis virus 20 (+20)
NCBITaxon:387139 20 (+20)
NCBITaxon:1322345 20 (+20)
Cutibacterium acnes 20 (+20)
Human T-cell lymphotrophic virus type 1 (strain ATK) 20 (+20)
Staphylococcus aureus 20 (+20)
Lactobacillus acidophilus 20 (+20)
Pseudomonas aeruginosa 20 (+20)
Vaccinia virus 20 (+20)
Staphylococcus aureus subsp. aureus 20 (+20)
Bacillus megaterium 20 (+20)
Other 0 (0)
Mus musculus domesticus 0 (-121175)

Gene Interactions By Source

Production Query

Dev Query

source count
Total 2977954 (-672160)
https://data.monarchinitiative.org/ttl/string.ttl 2977954 (-2050)
Other 0 (0)
https://data.monarchinitiative.org/ttl/biogrid.ttl 0 (-776804)

Case Model By Source

Production Query

Dev Query

source count
https://data.monarchinitiative.org/ttl/coriell.ttl 29852 (+45)
Total 29852 (+45)
Other 0 (0)

Gene Disease Causal Associations By Source

Production Query

Dev Query

species count
Total 10379 (+247)
https://data.monarchinitiative.org/ttl/orphanet.ttl 6099 (+64)
https://data.monarchinitiative.org/ttl/clinvar.nt 5637 (+5637)
https://data.monarchinitiative.org/ttl/kegg.ttl 5310 (+2)
https://data.monarchinitiative.org/ttl/omim.ttl 5228 (-6)
https://data.monarchinitiative.org/ttl/ctd.ttl 4924 (-2)
https://data.monarchinitiative.org/ttl/omia.ttl 725 (0)
https://data.monarchinitiative.org/ttl/mgi.ttl 11 (0)
https://data.monarchinitiative.org/ttl/gwascatalog.ttl 8 (+7)
https://data.monarchinitiative.org/ttl/mgi_slim.ttl 7 (+1)
https://data.monarchinitiative.org/ttl/mmrrc.ttl 3 (0)
https://data.monarchinitiative.org/ttl/impc.ttl 1 (0)
Other 0 (0)
https://data.monarchinitiative.org/ttl/clinvar.ttl 0 (-5512)

Relations

Production Query

Dev Query

relation count
Total 36277152 (-6163222)
is_about 8560125 (+398497)
has phenotype 4790072 (-353778)
interacts with 2977954 (-645930)
in paralogy relationship with 2931576 (+144646)
Source 2715636 (+121374)
Other 2597779 (-2293735)
in 1 to 1 orthology relationship with 2552902 (+563292)
in orthology relationship with 2108312 (+396884)
expressed in 1862538 (+4067)
involved_in 1550334 (+446579)
is_allele_of 852000 (-169692)
is part of 470222 (+113407)
enables 416639 (+97969)
has_affected_feature 406345 (+248593)
has_genotype 404652 (-343159)
in xenology relationship with 289220 (-4013)
contributes to condition 192788 (+161718)
is marker for 140588 (+549)
is_expression_variant_of 111240 (-60028)
mentions 104693 (-4586000)
pathogenic_for_condition 58823 (+3526)
is_reference_allele_of 58320 (+183)
is model of 37660 (-77)
derives_from 29852 (+45)
likely_pathogenic_for_condition 19398 (+724)
targets_gene 17880 (-157613)
causes condition 10539 (-295)
sequence_derives_from 8509 (-141619)
is causal susceptibility factor for 430 (+430)
contributes to 70 (-281)
disease has basis in feature 54 (+1)
is_variant_allele_of 2 (0)
colocalizes with 0 (-83256)
genetically interacts with 0 (-26230)

Variant Genotype Associations By Taxa

Production Query

Dev Query

species count
Total 825803 (-859766)
Mus musculus 652284 (+6333)
Danio rerio 160594 (+7232)
organism 7091 (-37)
Homo sapiens 4528 (+3)
sequence_alteration 1235 (+1235)
NCBITaxon:10102 20 (0)
Mus musculus molossinus 15 (0)
Mus musculus bactrianus 7 (0)
Mus spretus 6 (0)
Mus musculus musculus 5 (-6)
Mus 4 (0)
Rattus norvegicus 4 (0)
Mus musculus castaneus 4 (0)
Macaca mulatta 2 (0)
Cricetulus griseus 1 (0)
Saguinus labiatus 1 (0)
Plecturocebus moloch 1 (0)
Bos taurus 1 (0)
Other 0 (0)
Drosophila melanogaster 0 (-873495)
Mus musculus domesticus 0 (-1031)

Publication Gene By Source

Production Query

Dev Query

source count
Total 5087860 (-1194988)
https://data.monarchinitiative.org/ttl/ncbigene.ttl 4170437 (+125401)
https://data.monarchinitiative.org/ttl/go.ttl 1038405 (+229075)
https://data.monarchinitiative.org/ttl/flybase.ttl 96829 (-1892315)
https://data.monarchinitiative.org/ttl/sgd.ttl 86732 (0)
https://data.monarchinitiative.org/ttl/zfin.ttl 70438 (+103)
https://data.monarchinitiative.org/ttl/gwascatalog.ttl 59818 (+58909)
https://data.monarchinitiative.org/ttl/mgi.ttl 57835 (+46665)
https://data.monarchinitiative.org/ttl/clinvar.nt 52474 (+52474)
https://data.monarchinitiative.org/ttl/wormbase.ttl 36448 (+7921)
https://data.monarchinitiative.org/ttl/mgi_slim.ttl 31951 (+241)
https://data.monarchinitiative.org/ttl/omim.ttl 28373 (+760)
https://data.monarchinitiative.org/ttl/hgnc.ttl 27894 (+272)
https://data.monarchinitiative.org/ttl/ctd.ttl 24111 (+428)
https://data.monarchinitiative.org/ttl/zfinslim.ttl 13173 (+582)
https://data.monarchinitiative.org/ttl/mmrrc.ttl 7503 (+5266)
https://data.monarchinitiative.org/ttl/impc.ttl 4630 (+4491)
https://data.monarchinitiative.org/ttl/animalqtldb.ttl 4613 (0)
https://data.monarchinitiative.org/ttl/rgd.ttl 176 (+3)
https://data.monarchinitiative.org/ttl/hpoa.ttl 4 (0)
Other 0 (0)
https://data.monarchinitiative.org/ttl/clinvar.ttl 0 (-51789)
https://data.monarchinitiative.org/ttl/biogrid.ttl 0 (-317771)

Disease Phenotype Associations By Taxa

Production Query

Dev Query

species count
Total 155625 (+9605)
Other 145184 (-820)
Homo sapiens 10441 (+10425)

Gene Variant Associations By Taxa

Production Query

Dev Query

species count
Total 1454296 (-280176)
Mus musculus 861071 (+35250)
Homo sapiens 220290 (+49769)
Drosophila melanogaster 181505 (-288902)
Caenorhabditis elegans 114726 (-1427)
Danio rerio 38956 (+1318)
Bos taurus 16962 (-62)
organism 9746 (+5889)
Sus scrofa 3353 (-27)
Gallus gallus 1687 (-25)
Drosophila ananassae 601 (-10)
Drosophila virilis 571 (-6)
Drosophila subobscura 536 (0)
Drosophila hydei 523 (-15)
Drosophila simulans 433 (-6)
Drosophila pseudoobscura pseudoobscura 330 (0)
Equus caballus 235 (-4)
Drosophila willistoni 206 (0)
Rattus norvegicus 180 (-76)
Drosophila funebris 177 (-2)
NCBITaxon:40372 149 (0)
NCBITaxon:30033 123 (0)
NCBITaxon:7257 122 (0)
Drosophila mauritiana 122 (0)
Drosophila buzzatii 121 (-2)
NCBITaxon:95109 95 (0)
Drosophila immigrans 91 (0)
Drosophila miranda 88 (0)
NCBITaxon:30019 88 (0)
NCBITaxon:7246 58 (0)
NCBITaxon:7300 53 (0)
NCBITaxon:76712 52 (0)
NCBITaxon:7231 50 (0)
Human alphaherpesvirus 2 45 (+45)
Drosophila mojavensis 44 (0)
Drosophila affinidisjuncta 42 (0)
Drosophila teissieri 41 (0)
Drosophila persimilis 39 (0)
NCBITaxon:30042 39 (0)
Drosophila littoralis 35 (0)
Hepacivirus C 34 (+34)
Drosophila paulistorum 32 (0)
Drosophila takahashii 30 (0)
Drosophila lutescens 27 (0)
Drosophila arizonae 26 (0)
NCBITaxon:7218 26 (0)
Pseudomonas aeruginosa 24 (+23)
NCBITaxon:60717 24 (0)
NCBITaxon:111875 24 (0)
Candida parapsilosis 23 (+23)
Human alphaherpesvirus 1 20 (-23)
Hepatitis C virus subtype 2a 20 (+20)
Drosophila ambigua 19 (0)
NCBITaxon:7283 18 (0)
NCBITaxon:42026 18 (0)
NCBITaxon:193351 17 (0)
NCBITaxon:7282 14 (0)
Drosophila auraria 14 (0)
NCBITaxon:125945 14 (0)
HIV-1 M:C_ETH2220 13 (+13)
Drosophila sechellia 13 (0)
NCBITaxon:64960 12 (0)
Drosophila hawaiiensis 12 (0)
Jaagsiekte sheep retrovirus 11 (+11)
Human immunodeficiency virus 1 9 (+3)
NCBITaxon:30036 9 (0)
Drosophila yakuba 9 (0)
Simian virus 40 8 (+8)
NCBITaxon:161732 8 (0)
NCBITaxon:195057 8 (0)
NCBITaxon:47314 8 (0)
Yellow fever virus 8 (+8)
Scaptodrosophila lebanonensis 7 (+1)
Ovis aries 7 (-4)
Sindbis virus 6 (+4)
NCBITaxon:30043 6 (0)
NCBITaxon:46794 6 (0)
Drosophila grimshawi 6 (0)
NCBITaxon:94111 6 (0)
NCBITaxon:7291 6 (0)
NCBITaxon:103846 5 (0)
NCBITaxon:76946 5 (0)
Human T-cell lymphotrophic virus type 1 (strain ATK) 5 (+5)
NCBITaxon:77771 5 (+5)
Vaccinia virus 5 (+4)
NCBITaxon:30023 4 (0)
Drosophila eugracilis 4 (0)
Canis lupus familiaris 4 (-4)
NCBITaxon:169138 4 (0)
Candida albicans 3 (+3)
NCBITaxon:69217 3 (0)
NCBITaxon:7249 3 (0)
NCBITaxon:218680 3 (0)
Salmonella enterica subsp. enterica serovar Typhi 2 (+2)
NCBITaxon:7279 2 (0)
NCBITaxon:30028 2 (0)
Salmonella 2 (+2)
Bacillus megaterium 2 (+2)
Drosophila erecta 2 (0)
NCBITaxon:30056 2 (0)
NCBITaxon:7297 2 (0)
Drosophila madeirensis 2 (0)
NCBITaxon:46822 2 (0)
NCBITaxon:40844 2 (0)
Dengue virus group 2 (+2)
Drosophila equinoxialis 2 (0)
NCBITaxon:70865 2 (+2)
NCBITaxon:42062 2 (0)
Xenopus (Silurana) tropicalis 2 (0)
NCBITaxon:57910 2 (0)
Drosophila pseudoobscura bogotana 2 (0)
Pan troglodytes 2 (0)
NCBITaxon:7248 1 (0)
NCBITaxon:30029 1 (0)
NCBITaxon:133978 1 (0)
Arabidopsis thaliana 1 (-7)
NCBITaxon:7271 1 (0)
NCBITaxon:141217 1 (0)
NCBITaxon:133981 1 (0)
NCBITaxon:134002 1 (0)
NCBITaxon:198721 1 (0)
NCBITaxon:7284 1 (0)
Drosophila orena 1 (0)
NCBITaxon:66368 1 (0)
Drosophila borealis 1 (0)
NCBITaxon:7270 1 (0)
Saccharomyces cerevisiae S288C 1 (0)
NCBITaxon:310057 1 (0)
Staphylococcus aureus 1 (-2)
NCBITaxon:7252 1 (0)
Manduca sexta 0 (-1)
Anopheles funestus 0 (-4)
NCBITaxon:55084 0 (-1)
Toxoplasma gondii 0 (-3)
Deinococcus radiodurans 0 (-2)
Cupiennius salei 0 (-8)
Amphimedon queenslandica 0 (-2)
Providencia stuartii 0 (-2)
Guillardia theta 0 (-4)
Potato virus X 0 (-1)
Zygosaccharomyces bailii 0 (-3)
NCBITaxon:118641 0 (-1)
Neurospora crassa 0 (-94)
BNODE:1f58a0779e93c2ed4d2 0 (-1)
NCBITaxon:32644 0 (-57)
Ricinus communis 0 (-7)
BNODE:bb2cf0ff025d4622cf5 0 (-16)
NCBITaxon:1962953 0 (-1)
NCBITaxon:196280 0 (-3)
NCBITaxon:2389 0 (-15)
Armoracia rusticana 0 (-1)
Bradyrhizobium sp. 0 (-7)
Escherichia virus P1 0 (-17)
NCBITaxon:191766 0 (-1)
NCBITaxon:1162220 0 (-1)
NCBITaxon:51655 0 (-1)
Cucurbit aphid-borne yellows virus 0 (-1)
Vibrio parahaemolyticus 0 (-3)
NCBITaxon:191210 0 (-2)
NCBITaxon:45264 0 (-2)
Clavularia sp. 0 (-2)
Penaeus merguiensis 0 (-1)
Aeromonas salmonicida 0 (-2)
BNODE:fc3f087ca372cb4d3a9 0 (-14)
NCBITaxon:301887 0 (-1)
NCBITaxon:39722 0 (-1)
Blattella germanica 0 (-2)
NCBITaxon:32630 0 (-197)
Mus musculus domesticus 0 (-35507)
NCBITaxon:5530 0 (-2)
NCBITaxon:8204 0 (-5)
Ixodes scapularis 0 (-1)
Escherichia coli 0 (-14337)
Aequorea victoria 0 (-3561)
NCBITaxon:703 0 (-1)
NCBITaxon:2387 0 (-13)
Corynephage beta 0 (-13)
Listeria monocytogenes 0 (-5)
NCBITaxon:12287 0 (-8)
Heliothis virescens 0 (-3)
NCBITaxon:2138 0 (-3)
Apis mellifera 0 (-13)
Human betaherpesvirus 5 0 (-2)
Human adenovirus 5 0 (-5)
Clostridium tetani 0 (-19)
Enterococcus faecalis 0 (-1)
Bacillus subtilis 0 (-3)
Saccharomyces cerevisiae 0 (-26882)
Pediculus humanus 0 (-1)
Spodoptera frugiperda ascovirus 1a 0 (-3)
Bacillus halodurans 0 (-2)
Heteractis crispa 0 (-2)
Bombyx mori 0 (-18)
NCBITaxon:7038 0 (-2)
NCBITaxon:56459 0 (-1)
Ceratitis capitata 0 (-5)
NCBITaxon:95512 0 (-4)
Photinus pyralis 0 (-143)
Nodamura virus 0 (-1)
NCBITaxon:7111 0 (-8)
Cricetulus griseus 0 (-1)
Salmonella enterica subsp. enterica serovar Typhimurium 0 (-6)
NCBITaxon:11309 0 (-3)
NCBITaxon:62873 0 (-2)
Euglena gracilis 0 (-3)
NCBITaxon:28456 0 (-4)
Streptococcus pyogenes 0 (-27)
NCBITaxon:88209 0 (-2)
Helicobacter pylori 0 (-2)
NCBITaxon:3821 0 (-1)
Chlamydomonas reinhardtii 0 (-47)
NCBITaxon:6136 0 (-6)
Acyrthosiphon pisum 0 (-2)
NCBITaxon:7120 0 (-1)
Zygosaccharomyces rouxii 0 (-4)
Rhodobacter sphaeroides 0 (-1)
Arachis hypogaea 0 (-1)
Oryctolagus cuniculus 0 (-11)
NCBITaxon:46745 0 (-1)
NCBITaxon:7119 0 (-2)
NCBITaxon:12470 0 (-12)
Oryza sativa 0 (-2)
Limulus polyphemus 0 (-2)
BNODE:a35efa09e0fb254e16a 0 (-14)
NCBITaxon:148603 0 (-6)
Escherichia virus Lambda 0 (-2)
Drosophila C virus 0 (-4)
Schistosoma japonicum 0 (-2)
Halocynthia roretzi 0 (-1)
NCBITaxon:499226 0 (-1)
NCBITaxon:1649241 0 (-1)
Trichoplax adhaerens 0 (-2)
Human T-cell leukemia virus type I 0 (-1)
NCBITaxon:45455 0 (-4)
Natronomonas pharaonis 0 (-7)
NCBITaxon:82678 0 (-2)
Streptomyces hygroscopicus 0 (-1)
BNODE:b1a448feb24de46088b 0 (-1)
NCBITaxon:35525 0 (-2)
Tribolium castaneum 0 (-24)
Autographa californica nucleopolyhedrovirus 0 (-14)
NCBITaxon:4957 0 (-3)
NCBITaxon:12227 0 (-11)
NCBITaxon:491304 0 (-1)
Campoletis sonorensis ichnovirus 0 (-2)
BNODE:f8141fdf82ae439afe6 0 (-3)
NCBITaxon:55100 0 (-3)
Monosiga brevicollis 0 (-3)
NCBITaxon:161601 0 (-1)
NCBITaxon:418985 0 (-3)
BNODE:e3f956b320a9fec1cf3 0 (-1)
Vibrio cholerae 0 (-3)
NCBITaxon:10456 0 (-1)
NCBITaxon:86600 0 (-349)
Hemitripterus americanus 0 (-1)
NCBITaxon:80765 0 (-3)
NCBITaxon:1051066 0 (-1)
NCBITaxon:32392 0 (-1)
Mesocricetus auratus 0 (-5)
Anopheles gambiae 0 (-80)
Conus marmoreus 0 (-1)
Kluyveromyces lactis 0 (-7)
Danaus plexippus 0 (-6)
Glycine max 0 (-2)
NCBITaxon:46758 0 (-8)
NCBITaxon:11913 0 (-1)
Glossina morsitans 0 (-3)
Aedes aegypti 0 (-8)
Pseudopleuronectes americanus 0 (-3)
NCBITaxon:1208342 0 (-2)
Lucilia cuprina 0 (-3)
NCBITaxon:658227 0 (-24)
Rhodococcus sp. 0 (-4)
NCBITaxon:35743 0 (-1)
Other 0 (0)
Human papillomavirus type 18 0 (-2)
Culex pipiens 0 (-3)
Schistocerca americana 0 (-2)
Ciona intestinalis 0 (-4)
Musca domestica 0 (-13)
NCBITaxon:139456 0 (-1)
Beet yellows virus 0 (-1)
NCBITaxon:7007 0 (-1)
NCBITaxon:7740 0 (-4)
Hadronyche versuta 0 (-2)
Peanut clump virus 0 (-1)
Megaselia scalaris 0 (-1)
NCBITaxon:12022 0 (-4)
Macaca mulatta polyomavirus 1 0 (-5)
BNODE:e66d689dd86a07aea60 0 (-3)
NCBITaxon:496660 0 (-4)
Xenopus laevis 0 (-33)
Rhodopseudomonas palustris 0 (-2)
Triticum aestivum 0 (-2)
NCBITaxon:955 0 (-5)
Human T-lymphotropic virus 2 0 (-1)
Human mastadenovirus C 0 (-5)
Bungarus multicinctus 0 (-2)
NCBITaxon:7010 0 (-4)
Bordetella pertussis 0 (-5)
Turnip crinkle virus 0 (-1)
Artemia franciscana 0 (-6)
Hydra vulgaris 0 (-3)
NCBITaxon:2014434 0 (-1)
NCBITaxon:108931 0 (-2)
Tomato bushy stunt virus 0 (-4)
Enterobacteria phage T7 0 (-9)
NCBITaxon:12232 0 (-1)
NCBITaxon:38358 0 (-6)
NCBITaxon:35572 0 (-1)
BNODE:eaba42a506034628afd 0 (-3)
BNODE:13446b3196cf19c664c 0 (-5)
Brevundimonas diminuta 0 (-1)
Cricket paralysis virus 0 (-2)
Entacmaea quadricolor 0 (-21)
Bacillus anthracis 0 (-3)
NCBITaxon:109461 0 (-2)
NCBITaxon:4808 0 (-1)

Publication Phenotype By Source

Production Query

Dev Query

source count
Total 5087860 (-1194988)
https://data.monarchinitiative.org/ttl/ncbigene.ttl 4170437 (+125401)
https://data.monarchinitiative.org/ttl/go.ttl 1038405 (+229075)
https://data.monarchinitiative.org/ttl/flybase.ttl 96829 (-1892315)
https://data.monarchinitiative.org/ttl/sgd.ttl 86732 (0)
https://data.monarchinitiative.org/ttl/zfin.ttl 70438 (+103)
https://data.monarchinitiative.org/ttl/gwascatalog.ttl 59818 (+58909)
https://data.monarchinitiative.org/ttl/mgi.ttl 57835 (+46665)
https://data.monarchinitiative.org/ttl/clinvar.nt 52474 (+52474)
https://data.monarchinitiative.org/ttl/wormbase.ttl 36448 (+7921)
https://data.monarchinitiative.org/ttl/mgi_slim.ttl 31951 (+241)
https://data.monarchinitiative.org/ttl/omim.ttl 28373 (+760)
https://data.monarchinitiative.org/ttl/hgnc.ttl 27894 (+272)
https://data.monarchinitiative.org/ttl/ctd.ttl 24111 (+428)
https://data.monarchinitiative.org/ttl/zfinslim.ttl 13173 (+582)
https://data.monarchinitiative.org/ttl/mmrrc.ttl 7503 (+5266)
https://data.monarchinitiative.org/ttl/impc.ttl 4630 (+4491)
https://data.monarchinitiative.org/ttl/animalqtldb.ttl 4613 (0)
https://data.monarchinitiative.org/ttl/rgd.ttl 176 (+3)
https://data.monarchinitiative.org/ttl/hpoa.ttl 4 (0)
Other 0 (0)
https://data.monarchinitiative.org/ttl/clinvar.ttl 0 (-51789)
https://data.monarchinitiative.org/ttl/biogrid.ttl 0 (-317771)

Publication Model By Source

Production Query

Dev Query

source count
Total 48621 (+30143)
https://data.monarchinitiative.org/ttl/wormbase.ttl 15500 (+15249)
https://data.monarchinitiative.org/ttl/mgi.ttl 14884 (+12878)
https://data.monarchinitiative.org/ttl/go.ttl 12708 (+11635)
https://data.monarchinitiative.org/ttl/coriell.ttl 8622 (+34)
https://data.monarchinitiative.org/ttl/ncbigene.ttl 8007 (+7881)
https://data.monarchinitiative.org/ttl/flybase.ttl 4098 (+1667)
https://data.monarchinitiative.org/ttl/zfin.ttl 2882 (+315)
https://data.monarchinitiative.org/ttl/omia.ttl 2635 (0)
https://data.monarchinitiative.org/ttl/mgi_slim.ttl 780 (+23)
https://data.monarchinitiative.org/ttl/mmrrc.ttl 102 (+4)
https://data.monarchinitiative.org/ttl/ctd.ttl 3 (+3)
Other 0 (0)

Genotype Phenotype Associations By Source

Production Query

Dev Query

source count
Total 573397 (-387715)
https://data.monarchinitiative.org/ttl/mgi.ttl 338204 (+4536)
https://data.monarchinitiative.org/ttl/zfin.ttl 108221 (+18291)
https://data.monarchinitiative.org/ttl/coriell.ttl 75404 (+1000)
https://data.monarchinitiative.org/ttl/hpoa.ttl 75401 (+1000)
https://data.monarchinitiative.org/ttl/impc.ttl 28433 (0)
https://data.monarchinitiative.org/ttl/go.ttl 12162 (+156)
https://data.monarchinitiative.org/ttl/mpd.ttl 10963 (+578)
https://data.monarchinitiative.org/ttl/mgi_slim.ttl 10 (0)
Other 0 (0)
https://data.monarchinitiative.org/ttl/flybase.ttl 0 (-412276)

Publication Variant By Source

Production Query

Dev Query

source count
Total 5400335 (-2751152)
https://data.monarchinitiative.org/ttl/ncbigene.ttl 4294007 (+125139)
https://data.monarchinitiative.org/ttl/animalqtldb.ttl 250257 (+785)
https://data.monarchinitiative.org/ttl/mgi.ttl 155812 (+155808)
https://data.monarchinitiative.org/ttl/clinvar.nt 154611 (+154611)
https://data.monarchinitiative.org/ttl/flybase.ttl 151798 (-3531815)
https://data.monarchinitiative.org/ttl/gwascatalog.ttl 111869 (+29907)
https://data.monarchinitiative.org/ttl/wormbase.ttl 107268 (+43753)
https://data.monarchinitiative.org/ttl/zfin.ttl 69040 (+1090)
https://data.monarchinitiative.org/ttl/omim.ttl 43372 (+548)
https://data.monarchinitiative.org/ttl/coriell.ttl 38325 (+212)
https://data.monarchinitiative.org/ttl/hgnc.ttl 32096 (+251)
https://data.monarchinitiative.org/ttl/go.ttl 29178 (+861)
https://data.monarchinitiative.org/ttl/mgi_slim.ttl 7603 (+53)
https://data.monarchinitiative.org/ttl/kegg.ttl 6170 (+123)
https://data.monarchinitiative.org/ttl/omia.ttl 5191 (0)
https://data.monarchinitiative.org/ttl/impc.ttl 4580 (+4580)
https://data.monarchinitiative.org/ttl/mmrrc.ttl 1606 (-19)
https://data.monarchinitiative.org/ttl/ctd.ttl 1400 (+1360)
https://data.monarchinitiative.org/ttl/hpoa.ttl 120 (+120)
https://data.monarchinitiative.org/ttl/sgd.ttl 29 (0)
Other 0 (0)
https://data.monarchinitiative.org/ttl/biogrid.ttl 0 (-520)
https://data.monarchinitiative.org/ttl/clinvar.ttl 0 (-149825)

Gene Interactions By Subject Taxa

Production Query

Dev Query

source count
Total 2977954 (-672160)
Homo sapiens 817393 (-516870)
Mus musculus 676453 (-48965)
Rattus norvegicus 484929 (0)
Drosophila melanogaster 375170 (-94836)
Caenorhabditis elegans 328246 (-13233)
Danio rerio 292466 (-477)
Hepatitis C virus subtype 2a 589 (+589)
Human alphaherpesvirus 1 411 (+411)
Human T-cell lymphotrophic virus type 1 (strain ATK) 287 (+287)
Pseudomonas aeruginosa 266 (+266)
Dengue virus group 208 (+208)
Simian virus 40 189 (+189)
Vaccinia virus 162 (+162)
Sindbis virus 152 (+152)
Escherichia coli 131 (+131)
Human immunodeficiency virus 1 124 (+124)
Hepacivirus C 115 (+115)
HIV-1 M:C_ETH2220 94 (+94)
Lactobacillus acidophilus 85 (+85)
Candida parapsilosis 75 (+75)
Salmonella enterica subsp. enterica serovar Typhi 65 (+65)
NCBITaxon:387139 43 (+43)
Bacillus megaterium 36 (+36)
Staphylococcus aureus subsp. aureus 29 (+29)
NCBITaxon:1322345 29 (+29)
Other 26 (0)
NCBITaxon:536056 25 (+25)
organism 24 (0)
NCBITaxon:70865 24 (+24)
Human alphaherpesvirus 2 22 (+22)
Candida albicans 21 (+21)
Jaagsiekte sheep retrovirus 19 (+19)
Yellow fever virus 14 (+14)
Salmonella 12 (+12)
Cutibacterium acnes 6 (+6)
Human respiratory syncytial virus B 4 (+4)
Staphylococcus aureus 4 (+4)
Murine leukemia virus 3 (+3)
NCBITaxon:1334565 3 (+3)
Mus musculus domesticus 0 (-1026)

Pathway Phenotype By Source

Production Query

Dev Query

source count
Total 96965 (+1263)
https://data.monarchinitiative.org/ttl/coriell.ttl 89013 (+2803)
https://data.monarchinitiative.org/ttl/hpoa.ttl 89013 (+2803)
https://data.monarchinitiative.org/ttl/omim.ttl 88944 (+2734)
https://data.monarchinitiative.org/ttl/ctd.ttl 86893 (+2725)
https://data.monarchinitiative.org/ttl/reactome.ttl 33356 (-529)
https://data.monarchinitiative.org/ttl/animalqtldb.ttl 7952 (-1540)
https://data.monarchinitiative.org/ttl/gwascatalog.ttl 7493 (+7493)
https://data.monarchinitiative.org/ttl/orphanet.ttl 884 (+468)
Other 0 (0)

Gene Disease Non-causal Associations By Taxa

Production Query

Dev Query

species count
Total 33739 (+16244)
Homo sapiens 33285 (+16107)
Mus musculus 215 (+10)
Rattus norvegicus 34 (+2)
Drosophila melanogaster 33 (-1)
Hepacivirus C 26 (+26)
Pseudomonas aeruginosa 24 (+24)
Danio rerio 24 (0)
Human alphaherpesvirus 2 14 (+14)
Human alphaherpesvirus 1 7 (+7)
Human immunodeficiency virus 1 6 (+6)
HIV-1 M:C_ETH2220 5 (+5)
Hepatitis C virus subtype 2a 5 (+5)
Simian virus 40 5 (+5)
NCBITaxon:1322345 5 (+5)
Sus scrofa 5 (0)
Vaccinia virus 5 (+5)
Bos taurus 4 (0)
Human T-cell lymphotrophic virus type 1 (strain ATK) 4 (+4)
Candida albicans 4 (+4)
Caenorhabditis elegans 4 (0)
Sindbis virus 3 (+3)
Yellow fever virus 3 (+3)
NCBITaxon:387139 3 (+3)
Bacillus megaterium 3 (+3)
Salmonella 2 (+2)
Human respiratory syncytial virus B 2 (+2)
Xenopus (Silurana) tropicalis 2 (+1)
Gallus gallus 2 (0)
Salmonella enterica subsp. enterica serovar Typhi 1 (+1)
NCBITaxon:1334565 1 (+1)
NCBITaxon:70865 1 (+1)
Candida parapsilosis 1 (+1)
Lactobacillus acidophilus 1 (+1)
Other 0 (0)
Canis lupus familiaris 0 (-1)
Mus musculus domesticus 0 (-5)

Gene Variant Associations By Source

Production Query

Dev Query

source count
Total 1454296 (-280176)
https://data.monarchinitiative.org/ttl/mgi.ttl 838709 (+309)
https://data.monarchinitiative.org/ttl/flybase.ttl 192674 (-336480)
https://data.monarchinitiative.org/ttl/clinvar.nt 129756 (+129756)
https://data.monarchinitiative.org/ttl/wormbase.ttl 114565 (-1406)
https://data.monarchinitiative.org/ttl/gwascatalog.ttl 60405 (+60405)
https://data.monarchinitiative.org/ttl/mmrrc.ttl 48904 (+1456)
https://data.monarchinitiative.org/ttl/zfin.ttl 41069 (+1308)
https://data.monarchinitiative.org/ttl/omim.ttl 27897 (+422)
https://data.monarchinitiative.org/ttl/animalqtldb.ttl 23510 (0)
https://data.monarchinitiative.org/ttl/impc.ttl 12948 (0)
https://data.monarchinitiative.org/ttl/go.ttl 5111 (+38)
Other 0 (0)
https://data.monarchinitiative.org/ttl/udp.ttl 0 (-3)
https://data.monarchinitiative.org/ttl/clinvar.ttl 0 (-134239)

Case Variant By Source

Production Query

Dev Query

source count
Total 4405 (+3)
https://data.monarchinitiative.org/ttl/coriell.ttl 4293 (+3)
https://data.monarchinitiative.org/ttl/udp.ttl 112 (0)
Other 0 (0)

Publication Disease By Source

Production Query

Dev Query

source count
Total 293279 (+56731)
https://data.monarchinitiative.org/ttl/ctd.ttl 98953 (+451)
https://data.monarchinitiative.org/ttl/zfin.ttl 81386 (+12080)
https://data.monarchinitiative.org/ttl/clinvar.nt 48818 (+48818)
https://data.monarchinitiative.org/ttl/wormbase.ttl 24874 (+24496)
https://data.monarchinitiative.org/ttl/go.ttl 20073 (+18841)
https://data.monarchinitiative.org/ttl/ncbigene.ttl 15439 (+15317)
https://data.monarchinitiative.org/ttl/mgi.ttl 14088 (+11964)
https://data.monarchinitiative.org/ttl/omia.ttl 13765 (0)
https://data.monarchinitiative.org/ttl/flybase.ttl 3857 (+1571)
https://data.monarchinitiative.org/ttl/coriell.ttl 3827 (+10)
https://data.monarchinitiative.org/ttl/gwascatalog.ttl 2307 (+175)
https://data.monarchinitiative.org/ttl/hpoa.ttl 1455 (+265)
https://data.monarchinitiative.org/ttl/mgi_slim.ttl 750 (+23)
https://data.monarchinitiative.org/ttl/hgnc.ttl 431 (+430)
https://data.monarchinitiative.org/ttl/monarch.ttl 184 (0)
https://data.monarchinitiative.org/ttl/mmrrc.ttl 102 (+2)
Other 0 (0)
https://data.monarchinitiative.org/ttl/clinvar.ttl 0 (-44539)

Gene Function By Taxa

Production Query

Dev Query

source count
Total 1893671 (+431104)
Mus musculus 341924 (+5775)
Homo sapiens 314665 (+1144)
Rattus norvegicus 294398 (+3351)
Danio rerio 171899 (-3414)
Sus scrofa 137514 (+115999)
Gallus gallus 123144 (+106974)
Bos taurus 121711 (+100591)
Canis lupus familiaris 116201 (+96039)
Caenorhabditis elegans 101115 (+5077)
Drosophila melanogaster 100344 (+602)
Saccharomyces cerevisiae S288C 68899 (+168)
Human immunodeficiency virus 1 237 (+237)
Hepatitis C virus subtype 2a 179 (+179)
Vaccinia virus 169 (+169)
Hepacivirus C 115 (+115)
Human alphaherpesvirus 1 106 (+106)
Jaagsiekte sheep retrovirus 102 (+102)
HIV-1 M:C_ETH2220 99 (+99)
Dengue virus group 91 (+91)
Pseudomonas aeruginosa 68 (+68)
Escherichia coli 60 (+60)
Human T-cell lymphotrophic virus type 1 (strain ATK) 57 (+57)
Simian virus 40 50 (+50)
Candida parapsilosis 50 (+50)
Salmonella enterica subsp. enterica serovar Typhi 42 (+42)
Yellow fever virus 41 (+41)
Human alphaherpesvirus 2 40 (+40)
Sindbis virus 37 (+37)
organism 37 (-841)
NCBITaxon:387139 29 (+29)
Bacillus megaterium 27 (+27)
Lactobacillus acidophilus 26 (+26)
Candida albicans 24 (+24)
Staphylococcus aureus subsp. aureus 21 (+21)
Staphylococcus aureus 20 (+20)
NCBITaxon:1322345 20 (+20)
NCBITaxon:1334565 19 (+19)
Salmonella 19 (+19)
Human respiratory syncytial virus B 18 (+18)
Cutibacterium acnes 18 (+18)
Murine leukemia virus 16 (+16)
NCBITaxon:70865 13 (+13)
NCBITaxon:536056 7 (+7)
Other 0 (0)
Mus musculus domesticus 0 (-2181)

Genotype Phenotype Associations By Taxa

Production Query

Dev Query

species count
Total 573397 (-387715)
Mus musculus 358530 (+5684)
Danio rerio 120376 (+18447)
Homo sapiens 75404 (+1000)
organism 17512 (+461)
sequence_alteration 1520 (+1520)
Mus musculus molossinus 13 (0)
NCBITaxon:477815 12 (0)
Mus musculus castaneus 12 (0)
NCBITaxon:10102 8 (0)
Mus 4 (0)
Mus musculus musculus 3 (-11)
Mus spretus 2 (0)
Mus musculus bactrianus 1 (0)
Other 0 (0)
Mus musculus domesticus 0 (-2540)
Drosophila melanogaster 0 (-412276)

Variant Disease Associations By Taxa

Production Query

Dev Query

species count
Total 112866 (+8233)
Homo sapiens 112093 (+8271)
organism 735 (-38)
Mus musculus 37 (+16)
Bos taurus 1 (0)
Other 0 (0)
Mus musculus domesticus 0 (-16)

Case Disease By Source

Production Query

Dev Query

source count
Total 11329 (+22)
https://data.monarchinitiative.org/ttl/coriell.ttl 11291 (+22)
https://data.monarchinitiative.org/ttl/udp.ttl 38 (0)
Other 0 (0)

Case Gene By Source

Production Query

Dev Query

source count
Total 1291 (+25)
https://data.monarchinitiative.org/ttl/coriell.ttl 1289 (+27)
https://data.monarchinitiative.org/ttl/omim.ttl 1266 (+2)
https://data.monarchinitiative.org/ttl/gwascatalog.ttl 127 (+127)
https://data.monarchinitiative.org/ttl/udp.ttl 2 (-2)
Other 0 (0)

Publication Genotype By Source

Production Query

Dev Query

source count
Total 127767 (-201256)
https://data.monarchinitiative.org/ttl/mgi.ttl 79428 (+79428)
https://data.monarchinitiative.org/ttl/zfin.ttl 28797 (-108)
https://data.monarchinitiative.org/ttl/coriell.ttl 10376 (+76)
https://data.monarchinitiative.org/ttl/go.ttl 9166 (+156)
Other 0 (0)
https://data.monarchinitiative.org/ttl/flybase.ttl 0 (-280808)

Gene Pathway By Taxa

Production Query

Dev Query

source count
Total 306921 (-9752)
Homo sapiens 142012 (+184)
Mus musculus 27011 (+980)
Rattus norvegicus 23563 (+19)
Canis lupus familiaris 19579 (-583)
Sus scrofa 19468 (-2047)
Danio rerio 19119 (-7123)
Bos taurus 18811 (-2309)
Gallus gallus 13867 (-2303)
Drosophila melanogaster 11514 (+795)
Caenorhabditis elegans 11380 (+3241)
Hepatitis C virus subtype 2a 108 (+108)
Dengue virus group 101 (+101)
Human immunodeficiency virus 1 42 (+42)
organism 37 (-841)
Human alphaherpesvirus 1 33 (+33)
Pseudomonas aeruginosa 28 (+28)
HIV-1 M:C_ETH2220 26 (+26)
Simian virus 40 26 (+26)
Hepacivirus C 23 (+23)
Jaagsiekte sheep retrovirus 22 (+22)
Vaccinia virus 20 (+20)
Escherichia coli 19 (+19)
Human T-cell lymphotrophic virus type 1 (strain ATK) 17 (+17)
Sindbis virus 13 (+13)
Human alphaherpesvirus 2 11 (+11)
NCBITaxon:70865 7 (+7)
Salmonella 7 (+7)
Staphylococcus aureus subsp. aureus 6 (+6)
Yellow fever virus 6 (+6)
NCBITaxon:536056 5 (+5)
NCBITaxon:1322345 5 (+5)
Candida parapsilosis 5 (+5)
Bacillus megaterium 5 (+5)
Lactobacillus acidophilus 4 (+4)
Candida albicans 4 (+4)
Salmonella enterica subsp. enterica serovar Typhi 3 (+3)
NCBITaxon:1334565 3 (+3)
Staphylococcus aureus 3 (+3)
Human respiratory syncytial virus B 3 (+3)
Cutibacterium acnes 3 (+3)
NCBITaxon:387139 2 (+2)
Other 0 (0)
Mus musculus domesticus 0 (-325)

Case Phenotype By Source

Production Query

Dev Query

source count
Total 1085 (0)
https://data.monarchinitiative.org/ttl/udp.ttl 1076 (0)
https://data.monarchinitiative.org/ttl/coriell.ttl 9 (0)
Other 0 (0)

Gene Disease Non-Causal Associations By Source

Production Query

Dev Query

species count
Total 33739 (+16244)
https://data.monarchinitiative.org/ttl/gwascatalog.ttl 16697 (+16456)
https://data.monarchinitiative.org/ttl/ctd.ttl 16181 (+221)
https://data.monarchinitiative.org/ttl/orphanet.ttl 1154 (-29)
https://data.monarchinitiative.org/ttl/omim.ttl 735 (-47)
https://data.monarchinitiative.org/ttl/kegg.ttl 530 (-80)
https://data.monarchinitiative.org/ttl/clinvar.nt 383 (+383)
https://data.monarchinitiative.org/ttl/coriell.ttl 36 (+1)
https://data.monarchinitiative.org/ttl/udp.ttl 2 (-2)
Other 0 (0)
https://data.monarchinitiative.org/ttl/clinvar.ttl 0 (-388)

Gene Phenotype Associations By Source

Production Query

Dev Query

source count
Total 659171 (-63542)
https://data.monarchinitiative.org/ttl/mgi_slim.ttl 209155 (+3385)
https://data.monarchinitiative.org/ttl/hpoa.ttl 102035 (-28919)
https://data.monarchinitiative.org/ttl/clinvar.nt 97139 (+97139)
https://data.monarchinitiative.org/ttl/omim.ttl 86174 (+7580)
https://data.monarchinitiative.org/ttl/flybase.ttl 77806 (-118269)
https://data.monarchinitiative.org/ttl/wormbase.ttl 77096 (+23379)
https://data.monarchinitiative.org/ttl/sgd.ttl 68224 (0)
https://data.monarchinitiative.org/ttl/zfinslim.ttl 62606 (+9172)
https://data.monarchinitiative.org/ttl/gwascatalog.ttl 48152 (+48147)
https://data.monarchinitiative.org/ttl/impc.ttl 17417 (0)
https://data.monarchinitiative.org/ttl/mgi.ttl 16087 (0)
https://data.monarchinitiative.org/ttl/go.ttl 11601 (+1826)
https://data.monarchinitiative.org/ttl/zfin.ttl 9067 (+124)
https://data.monarchinitiative.org/ttl/coriell.ttl 7125 (+260)
https://data.monarchinitiative.org/ttl/mmrrc.ttl 5239 (+125)
https://data.monarchinitiative.org/ttl/omia.ttl 1009 (0)
https://data.monarchinitiative.org/ttl/monarch.ttl 988 (0)
https://data.monarchinitiative.org/ttl/rgd.ttl 463 (+7)
https://data.monarchinitiative.org/ttl/orphanet.ttl 0 (-97786)
Other 0 (0)
https://data.monarchinitiative.org/ttl/clinvar.ttl 0 (-89034)

Gene Phenotype Associations By Taxa

Production Query

Dev Query

species count
Total 659171 (-63542)
Mus musculus 212741 (+10903)
Homo sapiens 149362 (+18388)
Caenorhabditis elegans 77217 (+23354)
Drosophila melanogaster 69381 (-126694)
Saccharomyces cerevisiae S288C 68230 (0)
Danio rerio 65805 (+9136)
organism 11075 (+5016)
Canis lupus familiaris 476 (0)
Drosophila hydei 468 (+468)
Rattus norvegicus 468 (+7)
Drosophila subobscura 377 (+377)
Drosophila virilis 342 (+342)
Drosophila ananassae 270 (+270)
Drosophila simulans 208 (+208)
Drosophila pseudoobscura pseudoobscura 206 (+206)
Drosophila willistoni 194 (+194)
Bos taurus 163 (0)
NCBITaxon:7257 153 (+153)
Drosophila funebris 133 (+133)
Felis catus 132 (0)
NCBITaxon:30019 124 (+124)
NCBITaxon:40372 118 (+118)
NCBITaxon:95109 82 (+82)
NCBITaxon:30033 82 (+82)
Pseudomonas aeruginosa 76 (+76)
Drosophila immigrans 72 (+72)
Hepatitis C virus subtype 2a 70 (+70)
NCBITaxon:7300 69 (+69)
NCBITaxon:7246 63 (+63)
Ovis aries 57 (0)
NCBITaxon:30042 56 (+56)
Drosophila buzzatii 55 (+55)
Drosophila mauritiana 52 (+52)
Drosophila paulistorum 49 (+49)
Human immunodeficiency virus 1 48 (+48)
Drosophila miranda 43 (+43)
Hepacivirus C 34 (+34)
Drosophila littoralis 34 (+34)
NCBITaxon:7218 33 (+33)
Sus scrofa 31 (0)
Equus caballus 31 (0)
Drosophila ambigua 27 (+27)
NCBITaxon:193351 22 (+22)
Human alphaherpesvirus 2 19 (+19)
Gallus gallus 19 (0)
Capra hircus 18 (0)
Phoenicopterus ruber 17 (0)
NCBITaxon:125945 15 (+15)
Drosophila persimilis 14 (+14)
NCBITaxon:76712 14 (+14)
NCBITaxon:7282 13 (+13)
NCBITaxon:7283 13 (+13)
Drosophila mojavensis 12 (+12)
Candida parapsilosis 11 (+11)
Drosophila auraria 11 (+11)
NCBITaxon:64960 11 (+11)
Oryctolagus cuniculus 10 (0)
Jaagsiekte sheep retrovirus 10 (+10)
Mustela putorius furo 10 (0)
NCBITaxon:46794 10 (+10)
Drosophila sechellia 9 (+9)
NCBITaxon:30043 7 (+7)
NCBITaxon:169138 7 (+7)
Yellow fever virus 7 (+7)
NCBITaxon:42026 7 (+7)
Vaccinia virus 7 (+7)
Sindbis virus 6 (+6)
NCBITaxon:47314 6 (+6)
Human alphaherpesvirus 1 6 (+6)
NCBITaxon:161732 6 (+6)
Simian virus 40 6 (+6)
HIV-1 M:C_ETH2220 4 (+4)
NCBITaxon:30028 4 (+4)
NCBITaxon:69217 4 (+4)
Macaca mulatta 4 (0)
Oryzias latipes 4 (0)
NCBITaxon:46822 4 (+4)
Neovison vison 4 (0)
NCBITaxon:40844 4 (+4)
Drosophila takahashii 3 (+3)
Drosophila equinoxialis 3 (+3)
NCBITaxon:94111 3 (+3)
Meleagris gallopavo 3 (0)
Human T-cell lymphotrophic virus type 1 (strain ATK) 3 (+3)
Bacillus megaterium 3 (+3)
NCBITaxon:7252 3 (+3)
NCBITaxon:218680 3 (+3)
Mesocricetus auratus 3 (0)
NCBITaxon:198721 3 (+3)
NCBITaxon:30036 3 (+3)
Drosophila pseudoobscura bogotana 3 (+3)
NCBITaxon:30023 2 (+2)
Drosophila eugracilis 2 (+2)
NCBITaxon:30029 2 (+2)
NCBITaxon:133978 2 (+2)
NCBITaxon:42062 2 (+2)
NCBITaxon:76946 2 (+2)
Vulpes vulpes 2 (0)
NCBITaxon:7271 2 (+2)
Drosophila erecta 2 (+2)
Bubalus bubalis 2 (0)
NCBITaxon:141217 2 (+2)
Drosophila arizonae 2 (+2)
NCBITaxon:133981 2 (+2)
NCBITaxon:134002 2 (+2)
NCBITaxon:195057 2 (+2)
Drosophila madeirensis 2 (+2)
Scaptodrosophila lebanonensis 2 (+2)
NCBITaxon:7291 2 (+2)
NCBITaxon:7270 2 (+2)
Candida albicans 2 (+2)
Salmonella enterica subsp. enterica serovar Typhi 1 (+1)
NCBITaxon:27706 1 (0)
NCBITaxon:103846 1 (+1)
NCBITaxon:7279 1 (+1)
NCBITaxon:68352 1 (0)
Coturnix japonica 1 (0)
NCBITaxon:9690 1 (0)
Salmonella 1 (+1)
NCBITaxon:310057 1 (+1)
Ursus americanus 1 (0)
Bos grunniens 1 (0)
Drosophila lutescens 1 (+1)
NCBITaxon:87177 1 (0)
Vulpes lagopus 1 (0)
NCBITaxon:30056 1 (+1)
NCBITaxon:7297 1 (+1)
NCBITaxon:70340 1 (0)
NCBITaxon:7284 1 (+1)
Staphylococcus aureus 1 (+1)
Numida meleagris 1 (0)
Peromyscus polionotus 1 (0)
NCBITaxon:43597 1 (0)
Sciurus carolinensis 1 (0)
Dengue virus group 1 (+1)
NCBITaxon:57910 1 (+1)
Panthera tigris tigris 1 (0)
NCBITaxon:7231 1 (+1)
NCBITaxon:66368 1 (+1)
NCBITaxon:61402 1 (0)
Drosophila yakuba 1 (+1)
NCBITaxon:32536 1 (0)
Mammuthus primigenius 1 (0)
NCBITaxon:38666 1 (0)
Other 0 (0)
Mus musculus domesticus 0 (-7540)

Variant Genotype Associations By Source

Production Query

Dev Query

source count
Total 825803 (-859766)
https://data.monarchinitiative.org/ttl/mmrrc.ttl 369418 (+1244)
https://data.monarchinitiative.org/ttl/mgi.ttl 277206 (+6027)
https://data.monarchinitiative.org/ttl/zfin.ttl 160594 (+7232)
https://data.monarchinitiative.org/ttl/impc.ttl 72181 (+237)
https://data.monarchinitiative.org/ttl/coriell.ttl 7270 (+4)
https://data.monarchinitiative.org/ttl/udp.ttl 112 (0)
Other 0 (0)
https://data.monarchinitiative.org/ttl/flybase.ttl 0 (-873495)

Variant Phenotype Associations By Taxa

Production Query

Dev Query

species count
Total 3664724 (+153483)
Homo sapiens 2137928 (+252012)
organism 466878 (-164615)
Mus musculus 428643 (+73371)
Caenorhabditis elegans 195108 (+104047)
Drosophila melanogaster 146328 (-64463)
Bos taurus 125205 (+7)
Danio rerio 107514 (+15459)
Sus scrofa 34559 (0)
Gallus gallus 13529 (+190)
Ovis aries 1519 (+26)
sequence_alteration 1305 (+1305)
Equus caballus 1009 (+2)
Drosophila hydei 663 (+663)
Drosophila subobscura 602 (+602)
Drosophila virilis 600 (+600)
Drosophila ananassae 422 (+422)
Drosophila pseudoobscura pseudoobscura 324 (+324)
Drosophila simulans 283 (+283)
Drosophila willistoni 260 (+260)
Drosophila funebris 229 (+229)
NCBITaxon:40372 206 (+206)
NCBITaxon:7257 156 (+156)
NCBITaxon:30019 142 (+142)
Drosophila immigrans 108 (+108)
NCBITaxon:95109 100 (+100)
NCBITaxon:30033 95 (+95)
Drosophila mauritiana 76 (+76)
NCBITaxon:7246 76 (+76)
NCBITaxon:7300 71 (+71)
NCBITaxon:30042 68 (+68)
Drosophila buzzatii 67 (+67)
Drosophila miranda 65 (+65)
Drosophila paulistorum 60 (+60)
NCBITaxon:76712 52 (+52)
Drosophila littoralis 45 (+45)
Drosophila persimilis 39 (+39)
NCBITaxon:7218 35 (+35)
Drosophila mojavensis 34 (+34)
Drosophila ambigua 28 (+28)
Saccharomyces cerevisiae S288C 23 (0)
NCBITaxon:193351 22 (+22)
Drosophila auraria 18 (+18)
NCBITaxon:125945 18 (+18)
NCBITaxon:7282 14 (+14)
NCBITaxon:7283 13 (+13)
NCBITaxon:64960 11 (+11)
NCBITaxon:42026 11 (+11)
NCBITaxon:46794 10 (+10)
NCBITaxon:161732 9 (+9)
Drosophila sechellia 9 (+9)
NCBITaxon:30036 9 (+9)
Drosophila takahashii 8 (+8)
NCBITaxon:30043 7 (+7)
NCBITaxon:47314 7 (+7)
NCBITaxon:169138 7 (+7)
NCBITaxon:94111 6 (+6)
NCBITaxon:7291 5 (+5)
NCBITaxon:30023 4 (+4)
NCBITaxon:69217 4 (+4)
NCBITaxon:30028 4 (+4)
NCBITaxon:46822 4 (+4)
NCBITaxon:40844 4 (+4)
Drosophila eugracilis 4 (+4)
NCBITaxon:103846 3 (+3)
Drosophila equinoxialis 3 (+3)
NCBITaxon:7252 3 (+3)
NCBITaxon:198721 3 (+3)
NCBITaxon:218680 3 (+3)
Drosophila pseudoobscura bogotana 3 (+3)
NCBITaxon:30029 2 (+2)
NCBITaxon:7279 2 (+2)
NCBITaxon:133978 2 (+2)
Drosophila arizonae 2 (+2)
NCBITaxon:42062 2 (+2)
NCBITaxon:76946 2 (+2)
NCBITaxon:7271 2 (+2)
Drosophila erecta 2 (+2)
NCBITaxon:7297 2 (+2)
NCBITaxon:141217 2 (+2)
NCBITaxon:133981 2 (+2)
NCBITaxon:134002 2 (+2)
NCBITaxon:30056 2 (+2)
NCBITaxon:195057 2 (+2)
Drosophila madeirensis 2 (+2)
Scaptodrosophila lebanonensis 2 (+2)
NCBITaxon:57910 2 (+2)
Drosophila yakuba 2 (+2)
NCBITaxon:7270 2 (+2)
Other 1 (-182)
NCBITaxon:310057 1 (+1)
Drosophila lutescens 1 (+1)
NCBITaxon:7284 1 (+1)
NCBITaxon:7231 1 (+1)
NCBITaxon:66368 1 (+1)
Mus musculus domesticus 0 (-68851)

Gene Disease Causal Associations By Taxa

Production Query

Dev Query

species count
Total 10379 (+247)
Homo sapiens 9629 (+232)
Canis lupus familiaris 230 (0)
Bos taurus 120 (0)
Felis catus 62 (0)
Ovis aries 47 (0)
Gallus gallus 41 (0)
Equus caballus 39 (0)
Sus scrofa 38 (0)
Capra hircus 15 (0)
Mus musculus 12 (+1)
Oryctolagus cuniculus 12 (0)
Coturnix japonica 9 (0)
Hepacivirus C 5 (+5)
Equus asinus 5 (0)
Neovison vison 5 (0)
Bubalus bubalis 4 (0)
Mesocricetus auratus 4 (0)
Bos grunniens 3 (0)
NCBITaxon:198806 3 (0)
Vulpes lagopus 3 (0)
Macaca mulatta 3 (0)
Oryzias latipes 3 (0)
Sindbis virus 2 (+2)
Human alphaherpesvirus 1 2 (+2)
Meleagris gallopavo 2 (0)
Vulpes vulpes 2 (0)
NCBITaxon:48883 2 (0)
Mustela putorius furo 2 (0)
Mammuthus primigenius 2 (0)
Macaca fascicularis 2 (0)
NCBITaxon:32536 2 (0)
Pseudomonas aeruginosa 2 (+2)
Delphinapterus leucas 1 (0)
NCBITaxon:37029 1 (0)
Dromaius novaehollandiae 1 (0)
Sus scrofa domesticus 1 (0)
Coturnix coturnix 1 (0)
Gorilla gorilla 1 (0)
Balaenoptera acutorostrata 1 (0)
Rangifer tarandus 1 (0)
Canis lupus 1 (0)
NCBITaxon:8523 1 (0)
Numida meleagris 1 (0)
Tursiops truncatus 1 (0)
Macaca fuscata 1 (0)
Elephas maximus 1 (0)
NCBITaxon:103584 1 (0)
Symphalangus syndactylus 1 (0)
NCBITaxon:9690 1 (0)
Astyanax 1 (0)
Hepatitis C virus subtype 2a 1 (+1)
Ursus americanus 1 (0)
NCBITaxon:118797 1 (0)
NCBITaxon:57661 1 (0)
NCBITaxon:38666 1 (0)
NCBITaxon:9773 1 (0)
NCBITaxon:87177 1 (0)
NCBITaxon:61406 1 (0)
NCBITaxon:273489 1 (0)
Rattus norvegicus 1 (0)
Peromyscus maniculatus 1 (0)
Panthera tigris 1 (0)
NCBITaxon:328808 1 (0)
NCBITaxon:68352 1 (0)
Cavia porcellus 1 (0)
Jaagsiekte sheep retrovirus 1 (+1)
Columba livia 1 (0)
NCBITaxon:338458 1 (0)
Anas platyrhynchos 1 (0)
Ctenopharyngodon idella 1 (0)
Human immunodeficiency virus 1 1 (+1)
NCBITaxon:34892 1 (0)
Hylobates lar 1 (0)
Camelus dromedarius 1 (0)
NCBITaxon:54059 1 (0)
Aepyceros melampus 1 (0)
NCBITaxon:70340 1 (0)
NCBITaxon:57662 1 (0)
NCBITaxon:46844 1 (0)
NCBITaxon:43597 1 (0)
Cebus apella 1 (0)
Sciurus carolinensis 1 (0)
Peromyscus polionotus 1 (0)
Oreochromis niloticus 1 (0)
Candida parapsilosis 1 (+1)
Canis latrans 1 (0)
Takifugu rubripes 1 (0)
Phoenicopterus ruber 1 (0)
NCBITaxon:61386 1 (0)
NCBITaxon:61402 1 (0)
NCBITaxon:345164 1 (0)
NCBITaxon:120794 1 (0)
Bos mutus 1 (0)
NCBITaxon:9579 1 (0)
Pan troglodytes 1 (0)
NCBITaxon:255217 1 (0)
NCBITaxon:61455 1 (0)
NCBITaxon:9691 1 (0)
Panthera tigris tigris 1 (0)
Other 0 (0)
Mus musculus domesticus 0 (-1)

Model Disease Associations By Source

Production Query

Dev Query

source count
Total 26369 (-99)
https://data.monarchinitiative.org/ttl/coriell.ttl 12013 (+30)
https://data.monarchinitiative.org/ttl/mgi.ttl 7946 (+142)
https://data.monarchinitiative.org/ttl/wormbase.ttl 3306 (+269)
https://data.monarchinitiative.org/ttl/flybase.ttl 1207 (-594)
https://data.monarchinitiative.org/ttl/zfin.ttl 964 (+54)
https://data.monarchinitiative.org/ttl/omia.ttl 933 (0)
Other 0 (0)

Gene Homology By Subject Taxa

Production Query

Dev Query

source count
Total 7882010 (+1100809)
Mus musculus 1042164 (+71490)
Danio rerio 921957 (+94110)
Rattus norvegicus 827158 (+50037)
Caenorhabditis elegans 677463 (+65243)
Sus scrofa 614948 (+27670)
Homo sapiens 613825 (+53155)
Drosophila melanogaster 421419 (+61020)
Canis lupus familiaris 360897 (+360897)
Bos taurus 350244 (+26120)
Equus caballus 323826 (+25395)
Xenopus (Silurana) tropicalis 283788 (+24319)
Gallus gallus 277383 (+30711)
Pan troglodytes 211249 (+14605)
Monodelphis domestica 199172 (+13586)
Macaca mulatta 186175 (+13151)
Felis catus 179291 (+179291)
Anolis carolinensis 175169 (+12541)
Arabidopsis thaliana 113934 (-24462)
Saccharomyces cerevisiae S288C 82626 (+12231)
Ornithorhynchus anatinus 17384 (+1071)
organism 335 (+1)
Human alphaherpesvirus 1 324 (+324)
Salmonella enterica subsp. enterica serovar Typhi 131 (+131)
Human immunodeficiency virus 1 102 (+102)
Dengue virus group 99 (+99)
Escherichia coli 91 (+91)
Hepatitis C virus subtype 2a 69 (+69)
NCBITaxon:1334565 67 (+67)
Hepacivirus C 66 (+66)
NCBITaxon:1322345 58 (+58)
Staphylococcus aureus subsp. aureus 57 (+57)
Simian virus 40 52 (+52)
Murine leukemia virus 51 (+51)
Salmonella 43 (+43)
Vaccinia virus 41 (+41)
Jaagsiekte sheep retrovirus 34 (+34)
NCBITaxon:70865 30 (+30)
Human T-cell lymphotrophic virus type 1 (strain ATK) 29 (+29)
Staphylococcus aureus 28 (+28)
Human respiratory syncytial virus B 28 (+28)
Lactobacillus acidophilus 27 (+27)
Cutibacterium acnes 26 (+26)
Bacillus megaterium 24 (+24)
Sindbis virus 22 (+22)
NCBITaxon:387139 21 (+21)
HIV-1 M:C_ETH2220 19 (+19)
Candida parapsilosis 17 (+17)
Pseudomonas aeruginosa 15 (+15)
Yellow fever virus 13 (+13)
Candida albicans 11 (+11)
Human alphaherpesvirus 2 8 (+8)
Other 0 (0)
Mus musculus domesticus 0 (-12976)

Disease Phenotype Associations By Source

Production Query

Dev Query

species count
Total 155625 (+9605)
https://data.monarchinitiative.org/ttl/hpoa.ttl 153546 (+9604)
https://data.monarchinitiative.org/ttl/monarch.ttl 1804 (0)
https://data.monarchinitiative.org/ttl/omia.ttl 221 (0)
https://data.monarchinitiative.org/ttl/omim.ttl 2 (+2)
Other 0 (0)

Variant Disease Associations By Source

Production Query

Dev Query

source count
Total 112866 (+8233)
https://data.monarchinitiative.org/ttl/clinvar.nt 77859 (+77859)
https://data.monarchinitiative.org/ttl/gwascatalog.ttl 32750 (+4026)
https://data.monarchinitiative.org/ttl/coriell.ttl 1025 (0)
https://data.monarchinitiative.org/ttl/omim.ttl 1011 (-25)
https://data.monarchinitiative.org/ttl/udp.ttl 110 (0)
https://data.monarchinitiative.org/ttl/ctd.ttl 43 (0)
https://data.monarchinitiative.org/ttl/hpoa.ttl 35 (+35)
https://data.monarchinitiative.org/ttl/mgi.ttl 30 (0)
https://data.monarchinitiative.org/ttl/orphanet.ttl 3 (0)
https://data.monarchinitiative.org/ttl/mgi_slim.ttl 3 (0)
https://data.monarchinitiative.org/ttl/impc.ttl 1 (0)
Other 0 (0)
https://data.monarchinitiative.org/ttl/clinvar.ttl 0 (-73667)

SciGraph Queries

Sequence Features

Production Query

Dev Query

field count
features 7438399 (-1819110)

Genotypes

Production Query

Dev Query

field count
genotypes 335517 (-442294)

Genes

Production Query

Dev Query

field count
genes 1832017 (-667841)

Variant Loci

Production Query

Dev Query

field count
variants 863211 (-3879)

Genes in more than one taxa

Production Query

Dev Query

field count
request timeout 0

Disease Phenotype Mix-ups

Production Query

Dev Query

field count
disease 131 (+3)

Reagent Targeted Gene

Production Query

Dev Query

field count
rtg 106199 (-138469)

Gene Disease Mix-ups

Production Query

Dev Query

field count
gene 143 (+143)

Gene Variant Mix-ups

Production Query

Dev Query

field count
variant 5180 (-4)

Number of edges connected to owl:Nothing

Production Query

Dev Query

field count
nothing 0 (0)

nodes with subClassOf cycles (depth 2)

Production Query

Dev Query

field count
node_count 10 (+9)

nodes with subClassOf cycles (depth 1)

Production Query

Dev Query

field count
node_count 816 (+815)