Solr Queries

Genotype Phenotype Associations

Production Query

Dev Query

species count
Total 652496 (-296194)
Mus musculus 352846 (+25561)
Danio rerio 101929 (+4478)
Drosophila melanogaster 101671 (-295718)
Homo sapiens 76393 (-40006)
organism 17012 (+17012)
Mus musculus domesticus 2579 (+2543)
Mus musculus musculus 14 (+1)
Mus musculus molossinus 13 (+2)
NCBITaxon:477815 12 (+1)
Mus musculus castaneus 12 (0)
NCBITaxon:10102 8 (+8)
Mus 4 (-8)
Mus spretus 2 (+1)
Mus musculus bactrianus 1 (0)
Other 0 (-10069)

Variant Disease Associations

Production Query

Dev Query

species count
Total 104660 (+23589)
Homo sapiens 103848 (+23516)
organism 774 (+774)
Mus musculus 19 (+19)
Mus musculus domesticus 18 (+18)
Bos taurus 1 (+1)
Other 0 (-739)

Variant Genotype Associations

Production Query

Dev Query

species count
Total 1536691 (+483788)
Drosophila melanogaster 724617 (+335297)
Mus musculus 645887 (+123402)
Danio rerio 153362 (+16861)
organism 7124 (+7124)
Homo sapiens 4525 (+12)
Mus musculus domesticus 1099 (+1084)
NCBITaxon:10102 20 (+20)
Mus musculus molossinus 15 (+1)
Mus musculus musculus 11 (+1)
Mus musculus bactrianus 7 (+1)
Mus spretus 6 (+2)
Mus 4 (-14)
Mus musculus castaneus 4 (0)
Rattus norvegicus 4 (0)
Macaca mulatta 2 (0)
Bos taurus 1 (0)
Cricetulus griseus 1 (0)
Saguinus labiatus 1 (0)
Plecturocebus moloch 1 (0)
Pongo pygmaeus 0 (-2)
Gorilla gorilla 0 (-1)
Other 0 (0)

Disease Phenotype Associations

Production Query

Dev Query

species count
Total 144251 (-74061)
Other 144234 (-74073)
Homo sapiens 17 (+12)

Gene Disease Associations

Production Query

Dev Query

species count
Total 38956 (+4280)
Homo sapiens 37904 (+4207)
Canis lupus familiaris 231 (-3)
Mus musculus 214 (+49)
Bos taurus 124 (+5)
Felis catus 62 (+1)
Ovis aries 47 (0)
Sus scrofa 43 (+1)
Gallus gallus 43 (+2)
Equus caballus 39 (-2)
Drosophila melanogaster 34 (+2)
Rattus norvegicus 33 (+7)
Danio rerio 24 (+8)
Capra hircus 15 (0)
Oryctolagus cuniculus 12 (0)
Coturnix japonica 9 (0)
Mus musculus domesticus 8 (+8)
Neovison vison 5 (0)
Equus asinus 5 (0)
Caenorhabditis elegans 4 (0)
Mesocricetus auratus 4 (0)
Bubalus bubalis 4 (0)
Bos grunniens 3 (0)
Oryzias latipes 3 (-1)
Macaca mulatta 3 (0)
NCBITaxon:198806 3 (0)
Vulpes lagopus 3 (0)
Macaca fascicularis 2 (0)
Mammuthus primigenius 2 (0)
NCBITaxon:48883 2 (0)
Meleagris gallopavo 2 (0)
Mustela putorius furo 2 (0)
Vulpes vulpes 2 (0)
NCBITaxon:32536 2 (0)
Cebus apella 1 (0)
NCBITaxon:338458 1 (0)
NCBITaxon:38666 1 (0)
NCBITaxon:87177 1 (0)
NCBITaxon:68352 1 (0)
Hylobates lar 1 (0)
Delphinapterus leucas 1 (0)
NCBITaxon:57661 1 (0)
NCBITaxon:57662 1 (0)
Phoenicopterus ruber 1 (0)
NCBITaxon:61406 1 (0)
NCBITaxon:8523 1 (0)
Camelus dromedarius 1 (0)
NCBITaxon:61455 1 (0)
Xenopus (Silurana) tropicalis 1 (+1)
NCBITaxon:46844 1 (0)
NCBITaxon:273489 1 (0)
Peromyscus maniculatus 1 (0)
Canis lupus 1 (0)
Sciurus carolinensis 1 (0)
Rangifer tarandus 1 (0)
Ctenopharyngodon idella 1 (0)
Astyanax 1 (0)
NCBITaxon:43597 1 (0)
Peromyscus polionotus 1 (0)
NCBITaxon:37029 1 (0)
Cavia porcellus 1 (0)
NCBITaxon:54059 1 (0)
NCBITaxon:9773 1 (0)
NCBITaxon:61402 1 (0)
NCBITaxon:9579 1 (0)
Ursus americanus 1 (0)
Bos mutus 1 (0)
NCBITaxon:345164 1 (0)
Pan troglodytes 1 (0)
Gorilla gorilla 1 (0)
Dromaius novaehollandiae 1 (0)
Tursiops truncatus 1 (0)
Coturnix coturnix 1 (0)
NCBITaxon:118797 1 (0)
Symphalangus syndactylus 1 (0)
NCBITaxon:34892 1 (0)
NCBITaxon:70340 1 (0)
Oreochromis niloticus 1 (0)
NCBITaxon:103584 1 (0)
NCBITaxon:9690 1 (0)
Macaca fuscata 1 (0)
Panthera tigris 1 (0)
Aepyceros melampus 1 (0)
NCBITaxon:255217 1 (0)
Anas platyrhynchos 1 (0)
Elephas maximus 1 (0)
Columba livia 1 (0)
Balaenoptera acutorostrata 1 (0)
NCBITaxon:328808 1 (0)
Canis latrans 1 (0)
NCBITaxon:61386 1 (0)
Panthera tigris tigris 1 (0)
Sus scrofa domesticus 1 (0)
Takifugu rubripes 1 (0)
NCBITaxon:9691 1 (0)
Numida meleagris 1 (0)
NCBITaxon:120794 1 (0)
Other 0 (-5)

Model Disease Associations

Production Query

Dev Query

species count
Total 26468 (+1106)
Homo sapiens 11980 (+198)
Mus musculus 7197 (-210)
Caenorhabditis elegans 3037 (+1704)
Drosophila melanogaster 1801 (+1154)
Danio rerio 908 (+208)
Carnivora 684 (+684)
Mus musculus domesticus 506 (+506)
Ruminantia 144 (+144)
organism 96 (+96)
Felidae 55 (+55)
Equidae 34 (+34)
Suidae 5 (+5)
Sus 5 (+5)
Bos taurus 3 (0)
Gallus gallus 3 (+3)
NCBITaxon:477815 2 (+2)
Other 2 (0)
Mus musculus musculus 2 (+2)
Bovidae 2 (+2)
Mus musculus castaneus 1 (0)
Viridiplantae 1 (0)
Caenorhabditis 0 (-1602)
Mammalia 0 (-970)
Diptera 0 (-911)
Aves 0 (-3)

Relations

Production Query

Dev Query

relation count
Total 37365493 (-137503)
is_about 8282831 (+1373178)
mentions 4766572 (-733090)
Other 4410482 (+1163144)
has phenotype 4378249 (-1171886)
interacts with 3314676 (-318396)
Source 2520208 (+263067)
expressed in 1858471 (+405430)
in paralogy relationship with 1394135 (-692808)
involved_in 1102646 (+1102646)
in 1 to 1 orthology relationship with 1006094 (-343353)
is_allele_of 985034 (+129941)
in orthology relationship with 858618 (-724831)
has_genotype 599247 (+142857)
is part of 355803 (+160527)
enables 317636 (+138354)
is_expression_variant_of 170022 (-25153)
has_affected_feature 157749 (-84417)
is marker for 151349 (-59410)
in xenology relationship with 146620 (-72)
pathogenic_for_condition 110151 (+60685)
sequence_derives_from 89171 (-3959)
colocalizes with 83256 (+8143)
targets_gene 67462 (-104572)
is_reference_allele_of 58137 (+58133)
contributes to condition 41204 (+41204)
is model of 37737 (+1273)
likely_pathogenic_for_condition 36979 (+25431)
derives_from 29807 (+242)
causes condition 17704 (+17704)
genetically interacts with 13906 (-6463)
causally upstream of or within 1816 (+1816)
contributes to 1655 (-34718)
disease has basis in feature 64 (+54)
is_variant_allele_of 2 (+1)
involved in 0 (-928205)

Gene Phenotype Associations

Production Query

Dev Query

species count
Total 545242 (-248283)
Mus musculus 201810 (-13000)
Homo sapiens 139192 (-32982)
Saccharomyces cerevisiae S288C 68230 (+6)
Danio rerio 56669 (+2331)
Caenorhabditis elegans 53863 (+1323)
Drosophila melanogaster 11374 (-204171)
Mus musculus domesticus 7568 (+7568)
organism 6059 (+6059)
Rattus norvegicus 456 (-780)
Bos taurus 19 (-6188)
Gallus gallus 1 (-293)
NCBITaxon:27706 1 (+1)
NCBITaxon:61402 0 (-1)
Capra hircus 0 (-18)
Meleagris gallopavo 0 (-3)
Felis catus 0 (-125)
Saccharomyces cerevisiae 0 (-49)
Neovison vison 0 (-4)
NCBITaxon:68352 0 (-1)
NCBITaxon:87177 0 (-1)
Mesocricetus auratus 0 (-3)
Other 0 (-6505)
Escherichia coli 0 (-1)
NCBITaxon:32536 0 (-1)
Mustela putorius furo 0 (-10)
NCBITaxon:70340 0 (-1)
Oryzias latipes 0 (-4)
NCBITaxon:9690 0 (-1)
Phoenicopterus ruber 0 (-17)
Ovis aries 0 (-57)
Macaca mulatta 0 (-4)
Sciurus carolinensis 0 (-1)
Canis lupus familiaris 0 (-478)
Coturnix japonica 0 (-1)
Bos grunniens 0 (-1)
Equus caballus 0 (-63)
NCBITaxon:43597 0 (-1)
Vulpes vulpes 0 (-2)
Peromyscus polionotus 0 (-1)
Sus scrofa 0 (-784)
NCBITaxon:2387 0 (-1)
NCBITaxon:38666 0 (-1)
Oryctolagus cuniculus 0 (-10)
Vulpes lagopus 0 (-1)
Numida meleagris 0 (-1)
Mammuthus primigenius 0 (-1)
Ursus americanus 0 (-1)
Bubalus bubalis 0 (-2)
Panthera tigris tigris 0 (-1)

Gene Variant Associations

Production Query

Dev Query

species count
Total 1527577 (-30026)
Mus musculus 824691 (+15269)
Drosophila melanogaster 322299 (+27698)
Homo sapiens 164355 (-87143)
Caenorhabditis elegans 116133 (+3101)
Danio rerio 37618 (+4198)
Mus musculus domesticus 36129 (+36129)
Bos taurus 16998 (+1592)
organism 3857 (+3857)
Sus scrofa 3379 (+230)
Gallus gallus 1687 (+69)
Equus caballus 237 (+54)
Rattus norvegicus 177 (-56)
Ovis aries 7 (+2)
Canis lupus familiaris 4 (-1)
Pan troglodytes 2 (+1)
Xenopus (Silurana) tropicalis 2 (+2)
Saccharomyces cerevisiae S288C 1 (0)
Arabidopsis thaliana 1 (-6)
Human alphaherpesvirus 1 0 (-26)
NCBITaxon:1051066 0 (-1)
Megaselia scalaris 0 (-1)
NCBITaxon:12287 0 (-8)
Triticum aestivum 0 (-2)
NCBITaxon:2389 0 (-20)
Other 0 (-3679)
Escherichia coli 0 (-9453)
:.well-known/genid/bb2cf0ff025d4622cf5 0 (-16)
NCBITaxon:1208342 0 (-2)
Schistocerca americana 0 (-2)
Scaptodrosophila lebanonensis 0 (-5)
Armoracia rusticana 0 (-1)
NCBITaxon:88209 0 (-2)
Manduca sexta 0 (-1)
Human betaherpesvirus 5 0 (-2)
Tomato bushy stunt virus 0 (-4)
NCBITaxon:82678 0 (-2)
Trichoplax adhaerens 0 (-2)
Anopheles funestus 0 (-4)
Drosophila persimilis 0 (-2)
Hydra vulgaris 0 (-3)
Zygosaccharomyces rouxii 0 (-4)
Streptococcus pyogenes 0 (-16)
Arachis hypogaea 0 (-1)
Aeromonas salmonicida 0 (-2)
NCBITaxon:8204 0 (-5)
Anopheles gambiae 0 (-73)
NCBITaxon:35572 0 (-1)
NCBITaxon:39722 0 (-1)
NCBITaxon:196280 0 (-3)
Lucilia cuprina 0 (-3)
NCBITaxon:301887 0 (-1)
Corynephage beta 0 (-13)
NCBITaxon:62873 0 (-2)
NCBITaxon:191766 0 (-1)
:.well-known/genid/a35efa09e0fb254e16a 0 (-6)
NCBITaxon:6136 0 (-6)
NCBITaxon:210840 0 (-1)
:.well-known/genid/f8141fdf82ae439afe6 0 (-3)
NCBITaxon:10456 0 (-1)
NCBITaxon:955 0 (-4)
NCBITaxon:12227 0 (-11)
Neurospora crassa 0 (-53)
Campoletis sonorensis ichnovirus 0 (-2)
Schistosoma japonicum 0 (-2)
NCBITaxon:7231 0 (-49)
NCBITaxon:103846 0 (-2)
Vaccinia virus 0 (-1)
Artemia franciscana 0 (-6)
Rhodococcus sp. 0 (-4)
Mesocricetus auratus 0 (-2)
Conus marmoreus 0 (-1)
Human immunodeficiency virus 1 0 (-6)
NCBITaxon:32644 0 (-54)
NCBITaxon:418985 0 (-3)
NCBITaxon:95109 0 (-1)
Bacillus subtilis 0 (-3)
NCBITaxon:28456 0 (-3)
NCBITaxon:38358 0 (-6)
NCBITaxon:109461 0 (-2)
Blattella germanica 0 (-2)
Drosophila sechellia 0 (-2)
Heliothis virescens 0 (-3)
NCBITaxon:161601 0 (-1)
Cricetulus griseus 0 (-1)
Escherichia virus P1 0 (-16)
NCBITaxon:32392 0 (-1)
Macaca mulatta polyomavirus 1 0 (-5)
Drosophila simulans 0 (-22)
Drosophila mojavensis 0 (-12)
Glossina morsitans 0 (-3)
NCBITaxon:2387 0 (-11)
Kluyveromyces lactis 0 (-7)
NCBITaxon:191210 0 (-1)
Culex pipiens 0 (-3)
NCBITaxon:5530 0 (-2)
Bungarus multicinctus 0 (-1)
Cupiennius salei 0 (-8)
NCBITaxon:7038 0 (-2)
Clostridium tetani 0 (-17)
Pseudomonas aeruginosa 0 (-1)
NCBITaxon:1649241 0 (-1)
Bacillus anthracis 0 (-3)
Drosophila orena 0 (-1)
Pediculus humanus 0 (-1)
NCBITaxon:4957 0 (-3)
NCBITaxon:7740 0 (-2)
Pseudopleuronectes americanus 0 (-3)
Drosophila mauritiana 0 (-49)
Drosophila pseudoobscura pseudoobscura 0 (-23)
Deinococcus radiodurans 0 (-2)
Acyrthosiphon pisum 0 (-2)
Drosophila hawaiiensis 0 (-12)
NCBITaxon:11913 0 (-1)
Xenopus laevis 0 (-31)
Salmonella enterica subsp. enterica serovar Typhimurium 0 (-6)
Saccharomyces cerevisiae 0 (-18050)
Human mastadenovirus C 0 (-5)
Zygosaccharomyces bailii 0 (-3)
NCBITaxon:45264 0 (-2)
Drosophila miranda 0 (-11)
NCBITaxon:12470 0 (-12)
NCBITaxon:7119 0 (-2)
Brevundimonas diminuta 0 (-1)
Ricinus communis 0 (-6)
Drosophila affinidisjuncta 0 (-42)
NCBITaxon:7300 0 (-1)
NCBITaxon:35525 0 (-2)
NCBITaxon:32630 0 (-156)
Fenneropenaeus merguiensis 0 (-1)
Human T-lymphotropic virus 1 0 (-1)
Streptomyces hygroscopicus 0 (-1)
NCBITaxon:30033 0 (-8)
NCBITaxon:11309 0 (-3)
Clavularia sp. 0 (-2)
Peanut clump virus 0 (-1)
Potato virus X 0 (-1)
Drosophila ananassae 0 (-12)
Ciona intestinalis 0 (-4)
Halocynthia roretzi 0 (-1)
Drosophila teissieri 0 (-3)
NCBITaxon:12232 0 (-1)
Spodoptera frugiperda ascovirus 1a 0 (-1)
Hadronyche versuta 0 (-2)
Human adenovirus 5 0 (-5)
NCBITaxon:7010 0 (-4)
Cricket paralysis virus 0 (-2)
Musca domestica 0 (-13)
Toxoplasma gondii 0 (-3)
Aequorea victoria 0 (-2031)
Drosophila subobscura 0 (-2)
Helicobacter pylori 0 (-2)
Vibrio parahaemolyticus 0 (-3)
Bordetella pertussis 0 (-5)
Staphylococcus aureus 0 (-3)
NCBITaxon:496660 0 (-8)
NCBITaxon:703 0 (-1)
NCBITaxon:148603 0 (-6)
:.well-known/genid/3ac34b5428d3d051863 0 (-1)
Natronomonas pharaonis 0 (-5)
Nodamura virus 0 (-1)
Drosophila yakuba 0 (-5)
Amphimedon queenslandica 0 (-2)
Turnip crinkle virus 0 (-1)
NCBITaxon:46758 0 (-3)
Danaus plexippus 0 (-6)
Rhodopseudomonas palustris 0 (-2)
NCBITaxon:95512 0 (-4)
NCBITaxon:7007 0 (-1)
Drosophila virilis 0 (-38)
Tribolium castaneum 0 (-24)
Apis mellifera 0 (-13)
Listeria monocytogenes 0 (-5)
Human T-lymphotropic virus 2 0 (-1)
Monosiga brevicollis 0 (-3)
Cucurbit aphid-borne yellows virus 0 (-1)
Vibrio cholerae 0 (-3)
:.well-known/genid/1f58a0779e93c2ed4d2 0 (-1)
Enterobacteria phage T7 0 (-7)
NCBITaxon:56459 0 (-1)
NCBITaxon:55100 0 (-3)
NCBITaxon:55084 0 (-1)
NCBITaxon:7111 0 (-7)
Escherichia virus MS2 0 (-9)
NCBITaxon:80765 0 (-3)
Ixodes scapularis 0 (-1)
NCBITaxon:45455 0 (-4)
Drosophila willistoni 0 (-5)
NCBITaxon:64279 0 (-4)
Sindbis virus 0 (-2)
Ceratitis capitata 0 (-5)
:.well-known/genid/e66d689dd86a07aea60 0 (-3)
Drosophila grimshawi 0 (-5)
Aedes aegypti 0 (-8)
Chlamydomonas reinhardtii 0 (-38)
NCBITaxon:303354 0 (-1)
Photinus pyralis 0 (-116)
NCBITaxon:46745 0 (-1)
Euglena gracilis 0 (-3)
Providencia stuartii 0 (-1)
NCBITaxon:7120 0 (-1)
Hemitripterus americanus 0 (-1)
Autographa californica nucleopolyhedrovirus 0 (-13)
Drosophila hydei 0 (-6)
Entacmaea quadricolor 0 (-18)
Bradyrhizobium sp. 0 (-7)
Bacillus halodurans 0 (-2)
Limulus polyphemus 0 (-2)
NCBITaxon:86600 0 (-308)
Oryctolagus cuniculus 0 (-10)
Bombyx mori 0 (-18)
NCBITaxon:47314 0 (-1)
Beet yellows virus 0 (-1)
Drosophila immigrans 0 (-5)
Enterococcus faecalis 0 (-1)

Variant Phenotype Associations

Production Query

Dev Query

species count
Total 3315683 (-581453)
Homo sapiens 1971536 (-681938)
organism 519141 (+519141)
Mus musculus 354969 (+4844)
Bos taurus 125198 (+35735)
Danio rerio 92055 (+4183)
Caenorhabditis elegans 91061 (+1712)
Mus musculus domesticus 69155 (+69155)
Drosophila melanogaster 42147 (-8213)
Sus scrofa 34559 (+21856)
Gallus gallus 13339 (+7585)
Ovis aries 1493 (+336)
Equus caballus 1007 (+555)
Saccharomyces cerevisiae S288C 23 (0)
NCBITaxon:2387 0 (-3)
Saccharomyces cerevisiae 0 (-67)
Other 0 (-556211)
Escherichia coli 0 (-1)
Oncorhynchus mykiss 0 (-122)

SciGraph Queries

Genes in more than one taxa

Production Query

Dev Query

field count
request timeout 0

Sequence Features

Production Query

Dev Query

field count
features 7159679 (-1120776)

Genotypes

Production Query

Dev Query

field count
genotypes 777811 (+76092)

Genes

Production Query

Dev Query

field count
genes 1780257 (-216730)

Gene Disease Mix-ups

Production Query

Dev Query

field count
gene 79 (+79)

Gene Variant Mix-ups

Production Query

Dev Query

field count
variant 5184 (-12)

Variant Loci

Production Query

Dev Query

field count
variants 867026 (-14213)

Reagent Targeted Gene

Production Query

Dev Query

field count
rtg 244668 (+14651)

nodes with subClassOf cycles (depth 2)

Production Query

Dev Query

field count
request timeout 0

Number of edges connected to owl:Nothing

Production Query

Dev Query

field count
nothing 0 (0)