Solr Queries

Gene Phenotype Associations By Taxa

Production Query

Dev Query

species count
Total 731553 (+17674)
Mus musculus 216762 (+562)
Homo sapiens 211580 (+349)
Caenorhabditis elegans 78383 (+1868)
Drosophila melanogaster 70742 (+4684)
Danio rerio 69258 (+9746)
Saccharomyces cerevisiae S288C 68230 (+6)
organism 11124 (+331)
Rattus norvegicus 531 (+7)
Canis lupus familiaris 476 (+16)
Drosophila hydei 468 (+5)
Drosophila subobscura 377 (0)
Drosophila virilis 342 (+1)
Drosophila ananassae 270 (0)
Drosophila simulans 208 (0)
Drosophila pseudoobscura pseudoobscura 206 (0)
Drosophila willistoni 194 (+1)
Bos taurus 163 (+3)
Drosophila robusta 153 (0)
Staphylococcus aureus 148 (+77)
Drosophila funebris 133 (0)
Felis catus 132 (+4)
Drosophila busckii 124 (0)
Drosophila americana texana 118 (0)
Hepacivirus C 85 (+20)
Drosophila americana americana 82 (0)
Drosophila kikkawai 82 (0)
Drosophila immigrans 72 (0)
Scaptomyza pallida 69 (0)
Drosophila affinis 63 (0)
Ovis aries 57 (+2)
Drosophila prosaltans 56 (0)
Drosophila buzzatii 55 (0)
Drosophila mauritiana 52 (0)
Onchocerca volvulus 50 (+50)
Drosophila paulistorum 49 (0)
Drosophila miranda 43 (0)
Drosophila littoralis 34 (0)
Drosophila bifasciata 33 (0)
Equus caballus 31 (0)
Sus scrofa 31 (+1)
Serratia marcescens 30 (+30)
Drosophila ambigua 27 (0)
Drosophila transversa 22 (0)
Gallus gallus 19 (0)
Capra hircus 18 (+1)
Phoenicopterus ruber 17 (0)
Drosophila biarmipes 15 (0)
Human immunodeficiency virus 1 15 (+8)
Drosophila persimilis 14 (0)
Zaprionus indianus 14 (0)
Drosophila obscura 13 (0)
Drosophila phalerata 13 (0)
Drosophila mojavensis 12 (0)
Drosophila auraria 11 (0)
Drosophila mercatorum mercatorum 11 (0)
HIV-1 M:B_HXB2R 11 (+1)
Drosophila tropicalis 10 (0)
Mustela putorius furo 10 (0)
Oryctolagus cuniculus 10 (0)
Drosophila sechellia 9 (0)
Influenza A virus A
Drosophila aldrichi 7 (0)
Drosophila bipectinata 7 (0)
Drosophila repleta 7 (0)
Drosophila mediopunctata 6 (0)
Drosophila novamexicana 6 (0)
Escherichia coli ATCC 25922 5 (+5)
Drosophila crucigera 4 (0)
Drosophila gaucha 4 (0)
Drosophila pallidosa 4 (0)
Hepatitis C virus subtype 2a 4 (+3)
Macaca mulatta 4 (0)
Neovison vison 4 (0)
Oryzias latipes 4 (+1)
Scaptodrosophila rufifrons 4 (0)
Drosophila equinoxialis 3 (0)
Drosophila malerkotliana 3 (0)
Drosophila melanica 3 (0)
Drosophila metzii 3 (0)
Drosophila nigromaculata 3 (0)
Drosophila prostipennis 3 (0)
Drosophila pseudoobscura bogotana 3 (0)
Drosophila takahashii 3 (0)
Meleagris gallopavo 3 (0)
Mesocricetus auratus 3 (0)
Bubalus bubalis 2 (0)
Chymomyza costata 2 (0)
Drosophila acutilabella 2 (0)
Drosophila albomicans 2 (0)
Drosophila arizonae 2 (0)
Drosophila cardini 2 (0)
Drosophila elegans 2 (0)
Drosophila erecta 2 (0)
Drosophila eugracilis 2 (0)
Drosophila gibberosa 2 (0)
Drosophila madeirensis 2 (0)
Drosophila malerkotliana malerkotliana 2 (0)
Drosophila mimica 2 (0)
Drosophila nasuta 2 (0)
Drosophila nebulosa 2 (0)
Drosophila similis similis 2 (0)
Drosophila tripunctata 2 (0)
Escherichia coli K-12 2 (+2)
Hepatitis C virus subtype 1b 2 (+2)
Scaptodrosophila lebanonensis 2 (0)
Schizosaccharomyces pombe 972h- 2 (+2)
Vulpes vulpes 2 (0)
Acinonyx jubatus 1 (0)
Anser caerulescens caerulescens 1 (0)
Aspidoscelis inornatus 1 (0)
Bos grunniens 1 (0)
Chaetodipus intermedius 1 (0)
Coereba flaveola 1 (0)
Coturnix japonica 1 (0)
Dengue virus group 1 (0)
Drosophila ararama 1 (0)
Drosophila falleni 1 (0)
Drosophila guttifera 1 (0)
Drosophila lutescens 1 (0)
Drosophila mulleri 1 (0)
Drosophila nigrospiracula 1 (0)
Drosophila pachea 1 (0)
Drosophila tristis 1 (0)
Drosophila yakuba 1 (0)
Holbrookia maculata 1 (0)
Mammuthus primigenius 1 (0)
Micropterus salmoides 1 (0)
NCBITaxon:1392869 1 (+1)
NCBITaxon:61402 1 (0)
Numida meleagris 1 (0)
Panthera onca 1 (0)
Panthera tigris tigris 1 (0)
Peromyscus polionotus 1 (0)
Salmonella enterica subsp. enterica serovar Typhimurium 1 (+1)
Schizosaccharomyces pombe 1 (+1)
Sciurus carolinensis 1 (0)
Ursus americanus 1 (0)
Vulpes lagopus 1 (0)
Zaprionus sepsoides 1 (0)
Zaprionus tuberculatus 1 (0)
Other 0 (0)
Mycoplasma pneumoniae M129 0 (-47)
Bacillus subtilis subsp. subtilis str. JH642 0 (-37)
Jaagsiekte sheep retrovirus 0 (-12)
Candida albicans 0 (-11)
Yellow fever virus 0 (-7)
Escherichia coli 0 (-2)
Human adenovirus 5 0 (-1)

Gene Phenotype Associations By Source

Production Query

Dev Query

source count
Total 731553 (+17674)
mgislim 214497 (+233)
hpoa 154085 (-5)
orphanet 125224 (-3)
omim 92139 (+5)
flybase 79188 (+4787)
wormbase 78262 (+1747)
sgd 68224 (0)
zfinslim 65966 (+439)
gwascatalog 58626 (+437)
clinvar 23853 (-3)
impc 19741 (0)
mgi 18926 (0)
go 11748 (+11748)
zfin 9193 (+9193)
coriell 7514 (-3)
mmrrc 6916 (+90)
omia 1009 (+28)
monarch 988 (+28)
rgd 526 (+7)
Other 0 (0)

Gene Variant Associations By Taxa

Production Query

Dev Query

species count
Total 934123 (+1180)
Mus musculus 447913 (+27)
Drosophila melanogaster 186963 (0)
Homo sapiens 179402 (+916)
Caenorhabditis elegans 61143 (0)
Danio rerio 21439 (+320)
Bos taurus 19157 (0)
organism 7236 (+18)
Sus scrofa 3344 (0)
Gallus gallus 1647 (0)
Drosophila ananassae 601 (0)
Drosophila virilis 572 (0)
Drosophila subobscura 536 (0)
Drosophila hydei 523 (0)
Drosophila simulans 433 (0)
Drosophila pseudoobscura pseudoobscura 331 (0)
Equus caballus 235 (0)
Drosophila willistoni 206 (0)
Drosophila funebris 177 (0)
Staphylococcus aureus 152 (+25)
Drosophila americana texana 149 (0)
Drosophila kikkawai 123 (0)
Drosophila mauritiana 122 (0)
Drosophila robusta 122 (0)
Drosophila buzzatii 121 (0)
Drosophila americana americana 95 (0)
Drosophila immigrans 91 (0)
Drosophila busckii 88 (0)
Drosophila miranda 88 (0)
Drosophila affinis 58 (0)
Hepacivirus C 57 (-48)
Scaptomyza pallida 53 (0)
Zaprionus indianus 52 (0)
Drosophila mulleri 50 (0)
Drosophila mojavensis 44 (0)
Drosophila affinidisjuncta 42 (0)
Drosophila teissieri 41 (0)
Drosophila persimilis 39 (0)
Drosophila prosaltans 39 (0)
Drosophila littoralis 35 (0)
Drosophila paulistorum 32 (0)
Drosophila takahashii 30 (0)
Onchocerca volvulus 28 (+28)
Drosophila lutescens 27 (0)
Drosophila arizonae 26 (0)
Drosophila bifasciata 26 (0)
Drosophila jambulina 24 (0)
Drosophila punjabiensis 24 (0)
Drosophila ambigua 19 (0)
Serratia marcescens 19 (+19)
Drosophila bipectinata 18 (0)
Drosophila phalerata 18 (0)
Drosophila transversa 17 (0)
Drosophila auraria 14 (0)
Drosophila biarmipes 14 (0)
Drosophila obscura 14 (0)
Drosophila sechellia 13 (0)
Drosophila hawaiiensis 12 (0)
Drosophila mercatorum mercatorum 12 (0)
Human immunodeficiency virus 1 12 (+7)
Escherichia coli ATCC 25922 10 (+10)
HIV-1 M:B_HXB2R 10 (+1)
Drosophila malerkotliana 9 (0)
Drosophila yakuba 9 (0)
Drosophila malerkotliana malerkotliana 8 (0)
Drosophila mediopunctata 8 (0)
Drosophila novamexicana 8 (0)
Influenza A virus A
Ovis aries 7 (0)
Scaptodrosophila lebanonensis 7 (0)
Drosophila albomicans 6 (0)
Drosophila grimshawi 6 (0)
Drosophila prostipennis 6 (0)
Drosophila repleta 6 (0)
Drosophila tropicalis 6 (0)
Hepatitis C virus subtype 2a 6 (+3)
Chymomyza costata 5 (0)
Drosophila pachea 5 (0)
Hirtodrosophila confusa 5 (0)
Drosophila aldrichi 4 (0)
Drosophila elegans 4 (0)
Drosophila eugracilis 4 (0)
Drosophila azteca 3 (0)
Drosophila metzii 3 (0)
Drosophila pallidosa 3 (0)
Dengue virus group 2 (0)
Drosophila crucigera 2 (0)
Drosophila equinoxialis 2 (0)
Drosophila erecta 2 (0)
Drosophila falleni 2 (0)
Drosophila gaucha 2 (0)
Drosophila madeirensis 2 (0)
Drosophila nasuta 2 (0)
Drosophila nigrospiracula 2 (0)
Drosophila pseudoobscura bogotana 2 (0)
Escherichia coli K-12 2 (+2)
Hepatitis C virus subtype 1b 2 (+2)
NCBITaxon:467705 2 (+2)
Scaptodrosophila rufifrons 2 (0)
Zaprionus sepsoides 2 (0)
Zaprionus tuberculatus 2 (0)
Drosophila acutilabella 1 (0)
Drosophila ararama 1 (0)
Drosophila athabasca 1 (0)
Drosophila borealis 1 (0)
Drosophila cardini 1 (0)
Drosophila gibberosa 1 (0)
Drosophila guttifera 1 (0)
Drosophila melanica 1 (0)
Drosophila mimica 1 (0)
Drosophila nebulosa 1 (0)
Drosophila nigromaculata 1 (0)
Drosophila orena 1 (0)
Drosophila similis similis 1 (0)
Drosophila tripunctata 1 (0)
Drosophila tristis 1 (0)
NCBITaxon:1392869 1 (+1)
Salmonella enterica subsp. enterica serovar Typhimurium 1 (+1)
Other 0 (0)
Bacillus subtilis subsp. subtilis str. JH642 0 (-80)
Mycoplasma pneumoniae M129 0 (-27)
Candida albicans 0 (-23)
Jaagsiekte sheep retrovirus 0 (-9)
Yellow fever virus 0 (-8)
Human adenovirus 5 0 (-3)
Escherichia coli 0 (-2)
Porphyromonas gingivalis 0 (-2)

Gene Variant Associations By Source

Production Query

Dev Query

source count
Total 934123 (+1180)
mgi 446276 (+27)
flybase 198148 (0)
clinvar 77642 (+89)
gwascatalog 73608 (+679)
wormbase 61139 (0)
omim 28555 (+51)
animalqtldb 25717 (0)
zfin 21758 (+337)
mmrrc 13740 (+16)
impc 4815 (0)
Other 0 (0)

Gene Disease Causal Associations By Taxa

Production Query

Dev Query

species count
Total 8686 (0)
Homo sapiens 8668 (-2)
Mus musculus 7 (0)
Hepacivirus C 4 (+2)
Onchocerca volvulus 2 (+2)
Serratia marcescens 2 (+2)
Staphylococcus aureus 2 (+2)
Human immunodeficiency virus 1 1 (+1)
Other 0 (0)
Mycoplasma pneumoniae M129 0 (-4)
Bacillus subtilis subsp. subtilis str. JH642 0 (-1)
Candida albicans 0 (-1)
Jaagsiekte sheep retrovirus 0 (-1)

Gene Disease Causal Associations By Source

Production Query

Dev Query

species count
Total 8686 (0)
orphanet 6121 (0)
omim 5743 (-1)
clinvar 799 (0)
gwascatalog 8 (0)
mgislim 7 (0)
mgi 6 (0)
mmrrc 2 (0)
impc 1 (0)
Other 0 (0)

Gene Disease Non-causal Associations By Taxa

Production Query

Dev Query

species count
Total 24186 (+834)
Homo sapiens 23376 (+845)
Canis lupus familiaris 230 (0)
Bos taurus 120 (0)
Felis catus 62 (0)
Staphylococcus aureus 57 (+10)
Ovis aries 47 (0)
Gallus gallus 41 (0)
Equus caballus 39 (0)
Sus scrofa 38 (0)
Hepacivirus C 21 (-7)
Capra hircus 15 (0)
Oryctolagus cuniculus 12 (0)
Coturnix japonica 9 (0)
Equus asinus 5 (0)
Neovison vison 5 (0)
Bubalus bubalis 4 (0)
Mesocricetus auratus 4 (0)
Bos grunniens 3 (0)
Calidris pugnax 3 (0)
Macaca mulatta 3 (0)
Oryzias latipes 3 (0)
Vulpes lagopus 3 (0)
Acinonyx jubatus 2 (0)
Geospiza fortis 2 (0)
HIV-1 M:B_HXB2R 2 (0)
Macaca fascicularis 2 (0)
Mammuthus primigenius 2 (0)
Meleagris gallopavo 2 (0)
Mustela putorius furo 2 (0)
NCBITaxon:467705 2 (+2)
Onchocerca volvulus 2 (+2)
Vulpes vulpes 2 (0)
Aepyceros melampus 1 (0)
Anas platyrhynchos 1 (0)
Anser caerulescens caerulescens 1 (0)
Aspidoscelis inornatus 1 (0)
Astyanax 1 (0)
Balaenoptera acutorostrata 1 (0)
Balaenoptera omurai 1 (0)
Bos mutus 1 (0)
Camelus dromedarius 1 (0)
Canis latrans 1 (0)
Canis lupus 1 (0)
Catopuma temminckii 1 (0)
Cavia porcellus 1 (0)
Cebus apella 1 (0)
Chaetodipus intermedius 1 (0)
Coereba flaveola 1 (0)
Columba livia 1 (0)
Coturnix coturnix 1 (0)
Ctenopharyngodon idella 1 (0)
Delphinapterus leucas 1 (0)
Delphinus capensis 1 (0)
Dromaius novaehollandiae 1 (0)
Elephas maximus 1 (0)
Falco cherrug 1 (0)
Falco rusticolus 1 (0)
Gorilla gorilla 1 (0)
Holbrookia maculata 1 (0)
Human immunodeficiency virus 1 1 (-1)
Hylobates agilis 1 (0)
Hylobates lar 1 (0)
Influenza A virus A
Lacerta 1 (0)
Leopardus colocolo 1 (0)
Leopardus geoffroyi 1 (0)
Leopardus guigna 1 (0)
Lipotes vexillifer 1 (0)
Macaca fuscata 1 (0)
Megaptera novaeangliae 1 (0)
Monarcha castaneiventris 1 (0)
NCBITaxon:1392869 1 (+1)
NCBITaxon:61402 1 (0)
Neophocaena phocaenoides 1 (0)
Numida meleagris 1 (0)
Oreochromis niloticus 1 (0)
Pan troglodytes 1 (0)
Panthera onca 1 (0)
Panthera pardus 1 (0)
Panthera tigris 1 (0)
Panthera tigris tigris 1 (0)
Peromyscus maniculatus 1 (0)
Peromyscus polionotus 1 (0)
Phoenicopterus ruber 1 (0)
Prionailurus bengalensis 1 (0)
Rangifer tarandus 1 (0)
Rattus norvegicus 1 (0)
Sciurus carolinensis 1 (0)
Spinus cucullatus 1 (0)
Stercorarius parasiticus 1 (0)
Streptopelia risoria 1 (0)
Sula leucogaster 1 (0)
Sula sula 1 (0)
Sus scrofa domesticus 1 (0)
Symphalangus syndactylus 1 (0)
Takifugu rubripes 1 (0)
Tursiops truncatus 1 (0)
Ursus americanus 1 (0)
Other 0 (0)
Dengue virus group 0 (-3)
Bacillus subtilis subsp. subtilis str. JH642 0 (-2)
Escherichia coli 0 (-2)
Hepatitis C virus subtype 2a 0 (-2)
Jaagsiekte sheep retrovirus 0 (-2)
Mycoplasma pneumoniae M129 0 (-2)
Porphyromonas gingivalis 0 (-2)
Yellow fever virus 0 (-2)
Candida albicans 0 (-1)

Gene Disease Non-Causal Associations By Source

Production Query

Dev Query

species count
Total 24186 (+834)
gwascatalog 19275 (+826)
omim 3310 (+12)
orphanet 1256 (0)
omia 725 (0)
clinvar 121 (0)
coriell 41 (0)
mgi 2 (0)
mgislim 2 (0)
udp 2 (0)
Other 0 (0)

Gene Homology By Subject Taxa

Production Query

Dev Query

source count
Total 7052861 (-686008)
Danio rerio 586419 (-336109)
Xenopus tropicalis 519520 (+145937)
Mus musculus 487143 (-564899)
Rattus norvegicus 480433 (-352906)
Equus caballus 467637 (+135584)
Sus scrofa 441061 (+39004)
Homo sapiens 408988 (-199017)
Monodelphis domestica 373606 (+170595)
Bos taurus 363635 (+13065)
Drosophila melanogaster 362402 (-58336)
Canis lupus familiaris 360510 (+33351)
Caenorhabditis elegans 350104 (-330551)
Gallus gallus 337687 (+61111)
Pan troglodytes 281705 (+69276)
Anolis carolinensis 274544 (+98645)
Macaca mulatta 261939 (+86367)
Felis catus 249246 (+72018)
Ornithorhynchus anatinus 202226 (+184807)
Dictyostelium discoideum 85150 (+85150)
Saccharomyces cerevisiae S288C 73457 (-9129)
Schizosaccharomyces pombe 972h- 44294 (+44294)
Schizosaccharomyces pombe 23617 (+23617)
Escherichia coli 8728 (+8718)
Arabidopsis thaliana 7173 (-106669)
organism 353 (+13)
Staphylococcus aureus 209 (+75)
Hepacivirus C 173 (+12)
Bacillus megaterium 145 (+80)
Human immunodeficiency virus 1 135 (+29)
Mycobacterium tuberculosis H37Rv 77 (+77)
Candida albicans 66 (+49)
NCBITaxon:526980 64 (+8)
Dengue virus group 50 (+49)
NCBITaxon:1392869 46 (+46)
Serratia marcescens 39 (+39)
Human respiratory syncytial virus B 30 (-9)
Bacillus cereus ATCC 14579 23 (+23)
Influenza A virus A
Enterococcus faecalis 19 (-38)
Helicobacter pylori 19 (+19)
Hepatitis C virus subtype 2a 18 (-113)
Pseudomonas aeruginosa 17 (+17)
Escherichia coli ATCC 25922 16 (+16)
Hepatitis C virus subtype 1b 16 (+16)
Simian virus 40 16 (+2)
HIV-1 M:B_HXB2R 15 (-1)
Human respiratory syncytial virus 15 (+15)
Jaagsiekte sheep retrovirus 14 (-70)
Salmonella enterica subsp. enterica serovar Typhimurium 13 (+13)
Onchocerca volvulus 11 (+11)
Human adenovirus B3 8 (+8)
Escherichia coli K-12 5 (+5)
NCBITaxon:467705 5 (+5)
Other 0 (0)
Bacillus subtilis subsp. subtilis str. JH642 0 (-86)
Human adenovirus 5 0 (-49)
Mycoplasma pneumoniae M129 0 (-37)
Escherichia coli CFT073 0 (-30)
Lactobacillus acidophilus 0 (-29)
Staphylococcus saprophyticus 0 (-28)
Vaccinia virus 0 (-19)
Human papillomavirus type 16 0 (-18)
NCBITaxon:469008 0 (-16)
Yellow fever virus 0 (-13)
Lactobacillus johnsonii NCC 533 0 (-10)
Porphyromonas gingivalis 0 (-1)

Gene Interactions By Source

Production Query

Dev Query

source count
Total 3910583 (+91182)
string 3073810 (+89986)
biogrid 988393 (+1198)
Other 0 (0)

Gene Interactions By Subject Taxa

Production Query

Dev Query

source count
Total 3910583 (+91182)
Homo sapiens 1463028 (+505)
Mus musculus 734600 (-217)
Rattus norvegicus 575131 (+90188)
Drosophila melanogaster 470901 (0)
Caenorhabditis elegans 368291 (0)
Danio rerio 292821 (0)
Hepacivirus C 1327 (+83)
Bacillus megaterium 987 (+255)
Human immunodeficiency virus 1 570 (+345)
Staphylococcus aureus 487 (+274)
Escherichia coli 475 (+454)
Dengue virus group 323 (+287)
Helicobacter pylori 201 (+201)
Onchocerca volvulus 147 (+147)
Escherichia coli ATCC 25922 136 (+136)
Hepatitis C virus subtype 2a 122 (+38)
Serratia marcescens 117 (+117)
Simian virus 40 117 (-403)
Human adenovirus B3 100 (+100)
Candida albicans 93 (+6)
Human respiratory syncytial virus B 92 (0)
Bacillus cereus ATCC 14579 88 (+88)
NCBITaxon:467705 76 (+76)
Hepatitis C virus subtype 1b 49 (+49)
Mycobacterium tuberculosis H37Rv 36 (+36)
Influenza A virus A
NCBITaxon:526980 29 (0)
Escherichia coli K-12 27 (+27)
HIV-1 M:B_HXB2R 27 (0)
Pseudomonas aeruginosa 26 (+26)
Candida albicans SC5314 25 (+25)
Streptococcus pneumoniae 25 (0)
organism 23 (0)
Human respiratory syncytial virus 22 (+22)
Other 14 (0)
Salmonella enterica subsp. enterica serovar Typhimurium 10 (+10)
Enterococcus faecalis 5 (-88)
NCBITaxon:1392869 4 (+4)
Mycoplasma pneumoniae M129 0 (-747)
Yellow fever virus 0 (-375)
Human papillomavirus type 16 0 (-117)
Lactobacillus johnsonii NCC 533 0 (-100)
Porphyromonas gingivalis 0 (-76)
Human adenovirus 5 0 (-60)
Jaagsiekte sheep retrovirus 0 (-55)
NCBITaxon:469008 0 (-35)
Staphylococcus saprophyticus 0 (-26)
Lactobacillus acidophilus 0 (-7)
Bacillus subtilis subsp. subtilis str. JH642 0 (-6)
Escherichia coli CFT073 0 (-5)

Gene Function By Taxa

Production Query

Dev Query

source count
Total 2059528 (+122177)
Mus musculus 350466 (+45)
Homo sapiens 321334 (-30)
Rattus norvegicus 312945 (+5463)
Danio rerio 184301 (+1339)
Bos taurus 152631 (+8334)
Gallus gallus 148208 (+10499)
Sus scrofa 120036 (+10379)
Canis lupus familiaris 104830 (+10983)
Caenorhabditis elegans 104345 (+81)
Drosophila melanogaster 101902 (+35)
Saccharomyces cerevisiae S288C 70148 (-54)
Dictyostelium discoideum 42567 (+42567)
Schizosaccharomyces pombe 972h- 17997 (+17997)
Xenopus tropicalis 15342 (+3548)
Schizosaccharomyces pombe 10856 (+10856)
Human immunodeficiency virus 1 329 (+119)
Hepacivirus C 231 (-44)
Dengue virus group 116 (+65)
Staphylococcus aureus 113 (+69)
Bacillus megaterium 108 (+20)
Vaccinia virus 73 (0)
Escherichia coli ATCC 25922 62 (+62)
Onchocerca volvulus 52 (+52)
Escherichia coli 43 (+18)
Human adenovirus B3 43 (+43)
Jaagsiekte sheep retrovirus 36 (-31)
HIV-1 M:B_HXB2R 31 (0)
Simian virus 40 31 (-71)
Hepatitis B virus 29 (+29)
Mycobacterium tuberculosis H37Rv 24 (+24)
Bacillus cereus ATCC 14579 23 (+23)
Hepatitis C virus subtype 2a 23 (-20)
Candida albicans 22 (-29)
Influenza A virus A
NCBITaxon:526980 21 (0)
Serratia marcescens 21 (+21)
Enterococcus faecalis 18 (-4)
Helicobacter pylori 18 (+18)
Hepatitis C virus subtype 1b 18 (+18)
Pseudomonas aeruginosa 18 (+18)
Human respiratory syncytial virus 16 (+16)
Human respiratory syncytial virus B 14 (0)
NCBITaxon:467705 14 (+14)
Candida albicans SC5314 12 (+12)
Escherichia coli K-12 11 (+11)
Salmonella enterica subsp. enterica serovar Typhimurium 11 (+11)
NCBITaxon:1392869 10 (+10)
Streptococcus pneumoniae 7 (0)
Other 0 (0)
Mycoplasma pneumoniae M129 0 (-79)
Lactobacillus johnsonii NCC 533 0 (-71)
Yellow fever virus 0 (-39)
Human papillomavirus type 16 0 (-31)
Bacillus subtilis subsp. subtilis str. JH642 0 (-23)
Lactobacillus acidophilus 0 (-19)
Escherichia coli CFT073 0 (-18)
Staphylococcus saprophyticus 0 (-18)
NCBITaxon:469008 0 (-16)
Porphyromonas gingivalis 0 (-14)
Human adenovirus 5 0 (-11)

Gene Anatomy By Taxa

Production Query

Dev Query

source count
Total 1856388 (+12735)
Mus musculus 545985 (+59)
Homo sapiens 520564 (+2139)
Danio rerio 367244 (+19)
Drosophila melanogaster 197129 (0)
Rattus norvegicus 152987 (+10385)
Caenorhabditis elegans 71618 (0)
Hepacivirus C 140 (+20)
Human immunodeficiency virus 1 100 (+20)
Bacillus megaterium 40 (0)
Dengue virus group 40 (+20)
Escherichia coli 40 (+20)
Staphylococcus aureus 40 (+20)
Bacillus cereus ATCC 14579 20 (+20)
Candida albicans 20 (0)
Enterococcus faecalis 20 (0)
Escherichia coli ATCC 25922 20 (+20)
Escherichia coli K-12 20 (+20)
HIV-1 M:B_HXB2R 20 (0)
Helicobacter pylori 20 (+20)
Hepatitis C virus subtype 1b 20 (+20)
Hepatitis C virus subtype 2a 20 (0)
Human adenovirus B3 20 (+20)
Human respiratory syncytial virus 20 (+20)
Human respiratory syncytial virus B 20 (0)
Influenza A virus A
Mycobacterium tuberculosis H37Rv 20 (+20)
NCBITaxon:1392869 20 (+20)
NCBITaxon:467705 20 (+20)
NCBITaxon:526980 20 (0)
Onchocerca volvulus 20 (+20)
Pseudomonas aeruginosa 20 (+20)
Salmonella enterica subsp. enterica serovar Typhimurium 20 (+20)
Serratia marcescens 20 (+20)
Simian virus 40 20 (0)
Candida albicans SC5314 13 (+13)
Streptococcus pneumoniae 8 (0)
Other 0 (0)
Jaagsiekte sheep retrovirus 0 (-40)
Bacillus subtilis subsp. subtilis str. JH642 0 (-20)
Escherichia coli CFT073 0 (-20)
Human adenovirus 5 0 (-20)
Human papillomavirus type 16 0 (-20)
Lactobacillus acidophilus 0 (-20)
Lactobacillus johnsonii NCC 533 0 (-20)
Mycoplasma pneumoniae M129 0 (-20)
NCBITaxon:469008 0 (-20)
Porphyromonas gingivalis 0 (-20)
Staphylococcus saprophyticus 0 (-20)
Yellow fever virus 0 (-20)

Genotype Phenotype Associations By Taxa

Production Query

Dev Query

species count
Total 496920 (+6021)
Mus musculus 366525 (+61)
Danio rerio 119893 (+5932)
organism 8865 (-1)
Mus 1583 (+29)
Mus musculus molossinus 13 (0)
Mus musculus castaneus 12 (0)
Mus musculus musculus x M. m. domesticus 12 (0)
Mus setulosus 8 (0)
Homo sapiens 3 (0)
Mus musculus musculus 3 (0)
Mus spretus 2 (0)
Mus musculus bactrianus 1 (0)
Other 0 (0)

Genotype Phenotype Associations By Source

Production Query

Dev Query

source count
Total 496920 (+6021)
mgi 345346 (+82)
zfin 114692 (+731)
impc 31661 (0)
go 5208 (+5208)
mgislim 10 (0)
coriell 3 (0)
Other 0 (0)

Model Disease Associations By Taxa

Production Query

Dev Query

species count
Total 26712 (+12)
Homo sapiens 12117 (+1)
Mus musculus 7951 (+1)
Caenorhabditis elegans 3251 (0)
Drosophila melanogaster 1251 (0)
Danio rerio 1052 (+9)
Carnivora 684 (0)
Ruminantia 144 (0)
organism 130 (0)
Felidae 55 (0)
Equidae 34 (0)
Mus 19 (+1)
Suidae 5 (0)
Sus 5 (0)
Bos taurus 3 (0)
Gallus gallus 3 (0)
Bovidae 2 (0)
Mus musculus musculus x M. m. domesticus 2 (0)
Other 2 (0)
Mus musculus castaneus 1 (0)
Viridiplantae 1 (0)

Model Disease Associations By Source

Production Query

Dev Query

source count
Total 26712 (+12)
coriell 12120 (+1)
mgi 8103 (+2)
wormbase 3251 (0)
flybase 1251 (0)
zfin 1054 (+9)
omia 933 (0)
Other 0 (0)

Disease Phenotype Associations By Taxa

Production Query

Dev Query

species count
Total 161676 (+22)
Other 161495 (+22)
Homo sapiens 181 (0)

Disease Phenotype Associations By Source

Production Query

Dev Query

species count
Total 161676 (+22)
hpoa 159599 (-14)
monarch 1804 (+36)
omia 221 (0)
Other 0 (0)

Variant Genotype Associations By Taxa

Production Query

Dev Query

species count
Total 616746 (+506)
Mus musculus 533837 (+79)
Danio rerio 74044 (+429)
Homo sapiens 4869 (+1)
organism 3481 (-4)
Mus 472 (+1)
Mus setulosus 13 (0)
Mus musculus molossinus 9 (0)
Mus musculus bactrianus 4 (0)
Rattus norvegicus 4 (0)
Mus musculus musculus 3 (0)
Mus spretus 3 (0)
Mus musculus castaneus 2 (0)
Bos taurus 1 (0)
Cricetulus griseus 1 (0)
Macaca mulatta 1 (0)
Plecturocebus moloch 1 (0)
Saguinus labiatus 1 (0)
Other 0 (0)

Variant Genotype Associations By Source

Production Query

Dev Query

source count
Total 616746 (+506)
mmrrc 371623 (+40)
mgi 169927 (+53)
zfin 74044 (+429)
impc 36540 (0)
coriell 4906 (+1)
udp 112 (0)
Other 0 (0)

Variant Phenotype Associations By Taxa

Production Query

Dev Query

species count
Total 1008279 (+31311)
Mus musculus 434833 (+16025)
Drosophila melanogaster 149228 (+7651)
Homo sapiens 119555 (+804)
Bos taurus 108058 (0)
Caenorhabditis elegans 106033 (+1959)
Danio rerio 41634 (+3973)
organism 18085 (+890)
Sus scrofa 16207 (0)
Gallus gallus 6843 (0)
Ovis aries 1592 (0)
Equus caballus 1013 (0)
Drosophila hydei 663 (+6)
Drosophila subobscura 602 (0)
Drosophila virilis 600 (+1)
Drosophila ananassae 422 (0)
Drosophila pseudoobscura pseudoobscura 324 (0)
Drosophila simulans 283 (0)
Drosophila willistoni 260 (+2)
Drosophila funebris 229 (0)
Drosophila americana texana 206 (0)
Drosophila robusta 156 (0)
Drosophila busckii 142 (0)
Drosophila immigrans 108 (0)
Drosophila americana americana 100 (0)
Drosophila kikkawai 95 (0)
Drosophila affinis 76 (0)
Drosophila mauritiana 76 (0)
Scaptomyza pallida 71 (0)
Drosophila prosaltans 68 (0)
Drosophila buzzatii 67 (0)
Drosophila miranda 65 (0)
Drosophila paulistorum 60 (0)
Zaprionus indianus 52 (0)
Drosophila littoralis 45 (0)
Drosophila persimilis 39 (0)
Drosophila bifasciata 35 (0)
Drosophila mojavensis 34 (0)
Drosophila ambigua 28 (0)
Saccharomyces cerevisiae S288C 23 (0)
Drosophila transversa 22 (0)
Drosophila auraria 18 (0)
Drosophila biarmipes 18 (0)
Drosophila obscura 14 (0)
Drosophila phalerata 13 (0)
Drosophila bipectinata 11 (0)
Drosophila mercatorum mercatorum 11 (0)
Drosophila tropicalis 10 (0)
Drosophila malerkotliana 9 (0)
Drosophila mediopunctata 9 (0)
Drosophila sechellia 9 (0)
Drosophila takahashii 8 (0)
Drosophila aldrichi 7 (0)
Drosophila novamexicana 7 (0)
Drosophila repleta 7 (0)
Drosophila prostipennis 6 (0)
Drosophila albomicans 5 (0)
Drosophila crucigera 4 (0)
Drosophila elegans 4 (0)
Drosophila eugracilis 4 (0)
Drosophila gaucha 4 (0)
Drosophila pallidosa 4 (0)
Scaptodrosophila rufifrons 4 (0)
Drosophila equinoxialis 3 (0)
Drosophila melanica 3 (0)
Drosophila metzii 3 (0)
Drosophila nigromaculata 3 (0)
Drosophila pachea 3 (0)
Drosophila pseudoobscura bogotana 3 (0)
Chymomyza costata 2 (0)
Drosophila acutilabella 2 (0)
Drosophila arizonae 2 (0)
Drosophila cardini 2 (0)
Drosophila erecta 2 (0)
Drosophila falleni 2 (0)
Drosophila gibberosa 2 (0)
Drosophila madeirensis 2 (0)
Drosophila malerkotliana malerkotliana 2 (0)
Drosophila mimica 2 (0)
Drosophila nasuta 2 (0)
Drosophila nebulosa 2 (0)
Drosophila nigrospiracula 2 (0)
Drosophila similis similis 2 (0)
Drosophila tripunctata 2 (0)
Drosophila yakuba 2 (0)
Scaptodrosophila lebanonensis 2 (0)
Zaprionus sepsoides 2 (0)
Zaprionus tuberculatus 2 (0)
Drosophila ararama 1 (0)
Drosophila guttifera 1 (0)
Drosophila lutescens 1 (0)
Drosophila mulleri 1 (0)
Drosophila tristis 1 (0)
Other 0 (0)

Variant Phenotype Associations By Source

Production Query

Dev Query

source count
Total 1008279 (+31311)
mgi 413303 (+131)
flybase 154459 (+7660)
animalqtldb 133713 (0)
gwascatalog 115866 (+804)
wormbase 104074 (0)
zfin 59168 (+4368)
mgislim 33889 (-28)
go 22380 (+22380)
impc 19129 (0)
udp 3411 (0)
clinvar 157 (0)
hpoa 118 (0)
sgd 23 (0)
coriell 3 (0)
Other 0 (0)

Variant Disease Associations By Taxa

Production Query

Dev Query

species count
Total 153671 (+1513)
Homo sapiens 151058 (+1513)
Mus musculus 1361 (0)
Drosophila melanogaster 1251 (0)
organism 1 (0)
Other 0 (0)

Variant Disease Associations By Source

Production Query

Dev Query

source count
Total 153671 (+1513)
clinvar 113704 (0)
gwascatalog 36811 (+1513)
mgi 1361 (0)
flybase 1251 (0)
coriell 469 (0)
udp 60 (0)
omim 14 (0)
mgislim 3 (0)
orphanet 1 (0)
Other 0 (0)

Publication Variant By Source

Production Query

Dev Query

source count
Total 5379507 (+5850)
ncbigene 4403379 (+4165)
animalqtldb 271919 (0)
clinvar 171286 (0)
flybase 152938 (+10)
gwascatalog 132877 (+1432)
mgi 91161 (-8)
wormbase 54074 (0)
zfin 44767 (+433)
omim 44198 (+62)
hgnc 31987 (+6)
coriell 28167 (+57)
go 18818 (-422)
mgislim 7741 (-13)
kegg 6203 (0)
omia 5191 (0)
mmrrc 2907 (+1)
biogrid 712 (-252)
sgd 29 (0)
Other 0 (0)

Publication Gene By Source

Production Query

Dev Query

source count
Total 5239261 (+58360)
ncbigene 4276401 (+5904)
go 1095862 (+51617)
biogrid 369346 (-401)
flybase 97525 (+7)
sgd 86732 (0)
zfin 72233 (+188)
gwascatalog 72017 (+894)
mgi 59895 (+37)
clinvar 51711 (+37)
wormbase 37025 (0)
mgislim 32541 (+36)
omim 29034 (+44)
hgnc 27977 (+98)
zfinslim 13696 (+30)
mmrrc 9342 (+17)
impc 6723 (0)
animalqtldb 5170 (+1)
rgd 198 (+1)
hpoa 4 (0)
Other 0 (0)

Publication Phenotype By Source

Production Query

Dev Query

source count
Total 5239261 (+58360)
ncbigene 4276401 (+5904)
go 1095862 (+51617)
biogrid 369346 (-401)
flybase 97525 (+7)
sgd 86732 (0)
zfin 72233 (+188)
gwascatalog 72017 (+894)
mgi 59895 (+37)
clinvar 51711 (+37)
wormbase 37025 (0)
mgislim 32541 (+36)
omim 29034 (+44)
hgnc 27977 (+98)
zfinslim 13696 (+30)
mmrrc 9342 (+17)
impc 6723 (0)
animalqtldb 5170 (+1)
rgd 198 (+1)
hpoa 4 (0)
Other 0 (0)

Publication Genotype By Source

Production Query

Dev Query

source count
Total 124921 (+135)
mgi 80691 (-1)
zfin 30416 (+114)
coriell 9784 (+22)
go 4030 (0)
Other 0 (0)

Publication Disease By Source

Production Query

Dev Query

source count
Total 312676 (+850)
ctd 91331 (0)
zfin 90889 (+771)
clinvar 66381 (0)
wormbase 25617 (+17)
go 19918 (0)
ncbigene 14376 (+17)
mgi 13765 (+5)
omia 13765 (0)
flybase 4105 (+2)
coriell 4007 (+29)
gwascatalog 2528 (+26)
biogrid 2496 (0)
hpoa 1495 (0)
mgislim 756 (0)
monarch 184 (0)
mmrrc 95 (0)
hgnc 4 (0)
Other 0 (0)

Publication Model By Source

Production Query

Dev Query

source count
Total 50857 (+61)
wormbase 17209 (+9)
mgi 14720 (+5)
go 13509 (0)
ncbigene 9154 (+9)
coriell 8910 (+27)
flybase 4242 (+2)
zfin 3141 (+18)
omia 2635 (0)
biogrid 1795 (0)
mgislim 786 (0)
mmrrc 87 (0)
Other 0 (0)

Case Model By Source

Production Query

Dev Query

source count
coriell 30353 (+2)
Total 30353 (+2)
Other 0 (0)

Case Disease By Source

Production Query

Dev Query

source count
Total 0 (0)
Other 0 (0)

Case Variant By Source

Production Query

Dev Query

source count
udp 112 (0)
Total 112 (0)
Other 0 (0)

Case Genotype By Source

Production Query

Dev Query

source count
coriell 2960 (+1)
Total 2960 (+1)
Other 0 (0)

Case Gene By Source

Production Query

Dev Query

source count
omim 2 (0)
udp 2 (0)
Total 2 (0)
Other 0 (0)

Case Phenotype By Source

Production Query

Dev Query

source count
udp 1075 (0)
Total 1075 (0)
Other 0 (0)

Gene Pathway By Source

Production Query

Dev Query

source count
reactome 254635 (+17581)
Total 254635 (+17581)
Other 0 (0)

Gene Pathway By Taxa

Production Query

Dev Query

source count
Total 254635 (+17581)
Homo sapiens 40561 (-3)
Mus musculus 30088 (+2)
Rattus norvegicus 28135 (+1655)
Danio rerio 26726 (+1)
Sus scrofa 25902 (+5319)
Canis lupus familiaris 25241 (+5004)
Bos taurus 22350 (+1169)
Xenopus tropicalis 15342 (+3548)
Gallus gallus 15312 (+877)
Drosophila melanogaster 12456 (0)
Caenorhabditis elegans 12319 (0)
Bacillus megaterium 79 (+26)
Hepacivirus C 23 (-7)
Staphylococcus aureus 20 (+12)
Escherichia coli 15 (+14)
Human immunodeficiency virus 1 10 (-2)
NCBITaxon:467705 6 (+6)
Onchocerca volvulus 6 (+6)
Escherichia coli ATCC 25922 5 (+5)
Vaccinia virus 5 (0)
Dengue virus group 4 (0)
Candida albicans 3 (+1)
Helicobacter pylori 3 (+3)
Bacillus cereus ATCC 14579 2 (+2)
Candida albicans SC5314 2 (+2)
Escherichia coli K-12 2 (+2)
Jaagsiekte sheep retrovirus 2 (-2)
NCBITaxon:526980 2 (0)
Serratia marcescens 2 (+2)
Streptococcus pneumoniae 2 (0)
Enterococcus faecalis 1 (-2)
Hepatitis B virus 1 (+1)
Hepatitis C virus subtype 2a 1 (0)
Human adenovirus B3 1 (+1)
Human respiratory syncytial virus 1 (+1)
Human respiratory syncytial virus B 1 (0)
Influenza A virus A
NCBITaxon:1392869 1 (+1)
Pseudomonas aeruginosa 1 (+1)
Salmonella enterica subsp. enterica serovar Typhimurium 1 (+1)
Other 0 (0)
Mycoplasma pneumoniae M129 0 (-23)
Lactobacillus johnsonii NCC 533 0 (-17)
Simian virus 40 0 (-11)
Porphyromonas gingivalis 0 (-6)
Bacillus subtilis subsp. subtilis str. JH642 0 (-3)
Yellow fever virus 0 (-2)
Escherichia coli CFT073 0 (-1)
Lactobacillus acidophilus 0 (-1)
Staphylococcus saprophyticus 0 (-1)

Pathway Phenotype By Source

Production Query

Dev Query

source count
reactome 651836 (+7420)
Total 651836 (+7420)
mgi 486188 (+96)
mgislim 404194 (+135)
zfin 152489 (+6936)
zfinslim 96593 (+233)
go 78619 (+7072)
mmrrc 67591 (+18)
impc 37035 (+7)
rgd 1430 (0)
hpoa 729 (0)
Other 0 (0)

Relations

Production Query

Dev Query

relation count
Total 32577981 (-271941)
is_about 8736362 (+10554)
in orthology relationship with 3883305 (+1711691)
interacts with 3805431 (+90870)
in 1 to 1 orthology relationship with 3169556 (+635555)
has phenotype 2746129 (+61208)
Source 2708224 (+82828)
expressed in 1856388 (+12735)
Other 1593454 (+10327)
involved_in 1382760 (+75517)
is part of 514182 (+33529)
enables 445878 (+30712)
is_allele_of 431781 (+133)
has_affected_feature 374850 (+764)
contributes to condition 233209 (+3587)
is marker for 134103 (0)
mentions 97340 (+657)
pathogenic_for_condition 77826 (-4345)
colocalizes with 72080 (+313)
targets_gene 64884 (-746)
is_reference_allele_of 58940 (-17)
has_genotype 41921 (+25)
has role in modeling 37118 (+23)
likely_pathogenic_for_condition 36114 (+4345)
genetically interacts with 33072 (-1)
derives_from 30353 (+2)
causes condition 4631 (-1)
is_expression_variant_of 3666 (+1046)
is causal germline mutation in 2238 (+2)
contributes to 973 (+1)
is causal loss of function germline mutation of in 482 (0)
is causal susceptibility factor for 440 (-1)
is causal somatic mutation in 140 (0)
is causal gain of function germline mutation of in 69 (0)
disease has basis in feature 52 (0)
is causal germline mutation partially giving rise to 28 (0)
is_variant_allele_of 2 (0)
in paralogy relationship with 0 (-2740463)
in xenology relationship with 0 (-292791)

SciGraph Queries

Gene Disease Mix-ups

Production Query

Dev Query

field count
gene 21 (0)

Variant Disease Mix-ups

Production Query

Dev Query

field count
variant 53 (0)

Gene Variant Mix-ups

Production Query

Dev Query

field count
variant 5169 (0)

Disease Phenotype Mix-ups

Production Query

Dev Query

field count
disease 129 (0)

Genes in more than one taxa (pass inferred, not distinct)

Production Query

Dev Query

field count
genes 4186 (+2)

Genes in more than one taxa (fail inferred, not distinct)

Production Query

Dev Query

field count
genes 9344 (+5140)

Genes

Production Query

Dev Query

field count
genes 1943535 (+77142)

Diseases

Production Query

Dev Query

field count
disease 114953 (0)

Phenotypes

Production Query

Dev Query

field count
phenotype 167020 (+49343)

Variants

Production Query

Dev Query

field count
variants 5664968 (+1528)

Genotypes

Production Query

Dev Query

field count
genotypes 347500 (+579)

Sequence Features

Production Query

Dev Query

field count
features 7545165 (+78656)

Reagent Targeted Gene

Production Query

Dev Query

field count
rtg 104456 (+14)

Number of edges connected to owl:Nothing

Production Query

Dev Query

field count
nothing 0 (0)

nodes with subClassOf cycles (depth 2)

Production Query

Dev Query

field count
node_count 1 (0)

nodes with subClassOf cycles (depth 1)

Production Query

Dev Query

field count
node_count 1 (-109)