Solr Queries

Variant Phenotype Associations By Taxa

Production Query

Dev Query

species count
Total 1455022 (-2273593)
Mus musculus 413161 (0)
organism 404410 (-42239)
Caenorhabditis elegans 192960 (0)
Drosophila melanogaster 111499 (0)
Homo sapiens 108643 (-2179955)
Bos taurus 99658 (-25547)
Danio rerio 93846 (+348)
Sus scrofa 15384 (-19175)
Gallus gallus 6504 (-7025)
Ovis aries 1519 (0)
sequence_alteration 1305 (0)
Equus caballus 1009 (0)
Drosophila hydei 644 (0)
Drosophila subobscura 596 (0)
Drosophila virilis 592 (0)
Drosophila ananassae 398 (0)
Drosophila pseudoobscura pseudoobscura 321 (0)
Drosophila simulans 279 (0)
Drosophila willistoni 251 (0)
Drosophila funebris 228 (0)
NCBITaxon:40372 206 (0)
NCBITaxon:7257 156 (0)
NCBITaxon:30019 142 (0)
Drosophila immigrans 108 (0)
NCBITaxon:95109 100 (0)
NCBITaxon:30033 95 (0)
Drosophila mauritiana 76 (0)
NCBITaxon:7246 76 (0)
NCBITaxon:7300 71 (0)
NCBITaxon:30042 68 (0)
Drosophila buzzatii 67 (0)
Drosophila miranda 65 (0)
Drosophila paulistorum 60 (0)
NCBITaxon:76712 52 (0)
Drosophila littoralis 45 (0)
Drosophila persimilis 39 (0)
NCBITaxon:7218 35 (0)
Drosophila mojavensis 34 (0)
Drosophila ambigua 28 (0)
Saccharomyces cerevisiae S288C 23 (0)
NCBITaxon:193351 22 (0)
NCBITaxon:125945 18 (0)
Drosophila auraria 18 (0)
NCBITaxon:7282 14 (0)
NCBITaxon:7283 13 (0)
NCBITaxon:64960 11 (0)
NCBITaxon:42026 10 (0)
NCBITaxon:46794 10 (0)
NCBITaxon:161732 9 (0)
NCBITaxon:30036 9 (0)
Drosophila sechellia 9 (0)
Drosophila takahashii 8 (0)
NCBITaxon:30043 7 (0)
NCBITaxon:169138 7 (0)
NCBITaxon:47314 7 (0)
NCBITaxon:94111 6 (0)
NCBITaxon:7291 5 (0)
Drosophila eugracilis 4 (0)
NCBITaxon:30023 4 (0)
NCBITaxon:30028 4 (0)
NCBITaxon:46822 4 (0)
NCBITaxon:40844 4 (0)
NCBITaxon:69217 4 (0)
Drosophila equinoxialis 3 (0)
NCBITaxon:218680 3 (0)
NCBITaxon:198721 3 (0)
NCBITaxon:7252 3 (0)
Drosophila pseudoobscura bogotana 3 (0)
NCBITaxon:103846 3 (0)
NCBITaxon:7279 2 (0)
NCBITaxon:133978 2 (0)
NCBITaxon:141217 2 (0)
NCBITaxon:42062 2 (0)
Drosophila erecta 2 (0)
NCBITaxon:7297 2 (0)
NCBITaxon:133981 2 (0)
Drosophila madeirensis 2 (0)
NCBITaxon:134002 2 (0)
NCBITaxon:195057 2 (0)
NCBITaxon:30056 2 (0)
NCBITaxon:57910 2 (0)
Drosophila yakuba 2 (0)
NCBITaxon:76946 2 (0)
Drosophila arizonae 2 (0)
NCBITaxon:7271 2 (0)
NCBITaxon:7270 2 (0)
Scaptodrosophila lebanonensis 2 (0)
NCBITaxon:30029 2 (0)
NCBITaxon:7284 1 (0)
NCBITaxon:310057 1 (0)
Other 1 (0)
NCBITaxon:66368 1 (0)
Drosophila lutescens 1 (0)
NCBITaxon:7231 1 (0)

Publication Gene By Source

Production Query

Dev Query

source count
Total 5075837 (+1149)
https://data.monarchinitiative.org/ttl/ncbigene.ttl 4175822 (+2894)
https://data.monarchinitiative.org/ttl/go.ttl 1038506 (+6)
https://data.monarchinitiative.org/ttl/biogrid.ttl 338834 (+329)
https://data.monarchinitiative.org/ttl/flybase.ttl 96829 (0)
https://data.monarchinitiative.org/ttl/sgd.ttl 86732 (0)
https://data.monarchinitiative.org/ttl/zfin.ttl 70660 (+157)
https://data.monarchinitiative.org/ttl/gwascatalog.ttl 61361 (+377)
https://data.monarchinitiative.org/ttl/mgi.ttl 57869 (0)
https://data.monarchinitiative.org/ttl/clinvar.nt 48051 (-4132)
https://data.monarchinitiative.org/ttl/wormbase.ttl 37087 (0)
https://data.monarchinitiative.org/ttl/mgi_slim.ttl 31983 (0)
https://data.monarchinitiative.org/ttl/omim.ttl 28540 (+53)
https://data.monarchinitiative.org/ttl/hgnc.ttl 28025 (+387)
https://data.monarchinitiative.org/ttl/zfinslim.ttl 13191 (0)
https://data.monarchinitiative.org/ttl/mmrrc.ttl 7505 (0)
https://data.monarchinitiative.org/ttl/impc.ttl 4630 (0)
https://data.monarchinitiative.org/ttl/animalqtldb.ttl 4613 (0)
https://data.monarchinitiative.org/ttl/rgd.ttl 184 (0)
https://data.monarchinitiative.org/ttl/hpoa.ttl 4 (0)
Other 0 (0)

Genotype Phenotype Associations By Source

Production Query

Dev Query

source count
Total 560999 (+383)
https://data.monarchinitiative.org/ttl/mgi.ttl 338531 (0)
https://data.monarchinitiative.org/ttl/zfin.ttl 107498 (+383)
https://data.monarchinitiative.org/ttl/coriell.ttl 75564 (0)
https://data.monarchinitiative.org/ttl/hpoa.ttl 75561 (0)
https://data.monarchinitiative.org/ttl/impc.ttl 28433 (0)
https://data.monarchinitiative.org/ttl/mpd.ttl 10963 (0)
https://data.monarchinitiative.org/ttl/mgi_slim.ttl 10 (0)
Other 0 (0)

Case Variant By Source

Production Query

Dev Query

source count
Total 4408 (0)
https://data.monarchinitiative.org/ttl/coriell.ttl 4296 (0)
https://data.monarchinitiative.org/ttl/udp.ttl 112 (0)
Other 0 (0)

Case Genotype By Source

Production Query

Dev Query

source count
Total 3840 (0)
https://data.monarchinitiative.org/ttl/coriell.ttl 3807 (0)
https://data.monarchinitiative.org/ttl/udp.ttl 33 (0)
Other 0 (0)

Publication Genotype By Source

Production Query

Dev Query

source count
Total 128094 (+164)
https://data.monarchinitiative.org/ttl/mgi.ttl 79480 (0)
https://data.monarchinitiative.org/ttl/zfin.ttl 29052 (+164)
https://data.monarchinitiative.org/ttl/coriell.ttl 10395 (0)
https://data.monarchinitiative.org/ttl/go.ttl 9167 (0)
Other 0 (0)

Gene Disease Non-Causal Associations By Source

Production Query

Dev Query

species count
Total 20486 (+1930)
https://data.monarchinitiative.org/ttl/gwascatalog.ttl 16785 (+116)
https://data.monarchinitiative.org/ttl/omim.ttl 2675 (+1894)
https://data.monarchinitiative.org/ttl/orphanet.ttl 1213 (-1)
https://data.monarchinitiative.org/ttl/clinvar.nt 402 (-9)
https://data.monarchinitiative.org/ttl/coriell.ttl 37 (-5)
https://data.monarchinitiative.org/ttl/udp.ttl 2 (0)
Other 0 (0)

Genotype Phenotype Associations By Taxa

Production Query

Dev Query

species count
Total 560999 (+383)
Mus musculus 358862 (0)
Danio rerio 107498 (+383)
Homo sapiens 75564 (0)
organism 17500 (0)
sequence_alteration 1520 (0)
Mus musculus molossinus 13 (0)
NCBITaxon:477815 12 (0)
Mus musculus castaneus 12 (0)
NCBITaxon:10102 8 (0)
Mus 4 (0)
Mus musculus musculus 3 (0)
Mus spretus 2 (0)
Mus musculus bactrianus 1 (0)
Other 0 (0)

Gene Function By Taxa

Production Query

Dev Query

source count
Total 1893761 (+2)
Mus musculus 341851 (0)
Homo sapiens 314762 (+54)
Rattus norvegicus 294395 (0)
Danio rerio 171877 (0)
Sus scrofa 137574 (0)
Gallus gallus 123144 (0)
Bos taurus 121784 (0)
Canis lupus familiaris 116201 (0)
Caenorhabditis elegans 101391 (0)
Drosophila melanogaster 100344 (0)
Saccharomyces cerevisiae S288C 68899 (0)
Human immunodeficiency virus 1 272 (+96)
Hepacivirus C 245 (+130)
Escherichia coli 235 (+206)
Human gammaherpesvirus 8 88 (+88)
Mycobacterium tuberculosis H37Rv 79 (0)
NCBITaxon:528354 76 (+76)
Bacillus megaterium 69 (+69)
Pseudomonas aeruginosa 51 (+7)
Candida parapsilosis 50 (+50)
Dengue virus group 50 (-5)
Candida albicans SC5314 42 (+42)
Yellow fever virus 41 (-10)
Hepatitis B virus 36 (-60)
Staphylococcus aureus 24 (-2)
Influenza A virus (A/WSN/1933(H1N1)) 23 (0)
NCBITaxon:536056 21 (+21)
Human betaherpesvirus 5 21 (+21)
Bacillus subtilis 21 (+21)
Human herpesvirus 5 strain AD169 21 (0)
Enterococcus faecalis 19 (+19)
Hepatitis C virus subtype 1b 18 (0)
Influenzavirus A 16 (-9)
NCBITaxon:70865 11 (+11)
Human papillomavirus type 16 10 (+10)
Other 0 (0)
Micrococcus luteus 0 (-21)
Lactobacillus acidophilus 0 (-22)
Escherichia coli ATCC 8739 0 (-21)
HIV-1 M:B_HXB2R 0 (-72)
Salmonella enterica subsp. enterica serovar Typhi 0 (-42)
Neisseria meningitidis 0 (-16)
Hepatitis C virus subtype 2a 0 (-23)
HIV-1 M:C_ETH2220 0 (-109)
NCBITaxon:521007 0 (-51)
Lactobacillus johnsonii NCC 533 0 (-71)
Helicobacter pylori 0 (-18)
Listeria innocua 0 (-6)
Sindbis virus 0 (-68)
Human rhinovirus B3 0 (-78)
Fusarium oxysporum species complex 0 (-8)
Human adenovirus 5 0 (-11)
Human respiratory syncytial virus B 0 (-13)
Murine leukemia virus 0 (-16)
Jaagsiekte sheep retrovirus 0 (-40)
Human alphaherpesvirus 1 0 (-57)
Neisseria meningitidis MC58 0 (-42)
NCBITaxon:526980 0 (-20)
NCBITaxon:1392869 0 (-8)

Gene Variant Associations By Source

Production Query

Dev Query

source count
Total 1398327 (-63436)
https://data.monarchinitiative.org/ttl/mgi.ttl 839376 (0)
https://data.monarchinitiative.org/ttl/flybase.ttl 192674 (0)
https://data.monarchinitiative.org/ttl/wormbase.ttl 116276 (0)
https://data.monarchinitiative.org/ttl/clinvar.nt 69598 (-64179)
https://data.monarchinitiative.org/ttl/gwascatalog.ttl 61601 (+381)
https://data.monarchinitiative.org/ttl/mmrrc.ttl 48904 (0)
https://data.monarchinitiative.org/ttl/zfin.ttl 41500 (+287)
https://data.monarchinitiative.org/ttl/omim.ttl 28088 (+75)
https://data.monarchinitiative.org/ttl/animalqtldb.ttl 23510 (0)
https://data.monarchinitiative.org/ttl/impc.ttl 12948 (0)
https://data.monarchinitiative.org/ttl/go.ttl 5111 (0)
Other 0 (0)

Gene Disease Causal Associations By Source

Production Query

Dev Query

species count
Total 10413 (-119)
https://data.monarchinitiative.org/ttl/omim.ttl 6292 (+961)
https://data.monarchinitiative.org/ttl/orphanet.ttl 6099 (+1)
https://data.monarchinitiative.org/ttl/clinvar.nt 5861 (-56)
https://data.monarchinitiative.org/ttl/omia.ttl 725 (0)
https://data.monarchinitiative.org/ttl/mgi.ttl 11 (0)
https://data.monarchinitiative.org/ttl/gwascatalog.ttl 8 (0)
https://data.monarchinitiative.org/ttl/mgi_slim.ttl 7 (0)
https://data.monarchinitiative.org/ttl/mmrrc.ttl 3 (0)
https://data.monarchinitiative.org/ttl/impc.ttl 1 (0)
Other 0 (0)

Model Disease Associations By Source

Production Query

Dev Query

source count
Total 26436 (-514)
https://data.monarchinitiative.org/ttl/coriell.ttl 12024 (-516)
https://data.monarchinitiative.org/ttl/mgi.ttl 7975 (0)
https://data.monarchinitiative.org/ttl/wormbase.ttl 3328 (0)
https://data.monarchinitiative.org/ttl/flybase.ttl 1207 (0)
https://data.monarchinitiative.org/ttl/zfin.ttl 969 (+2)
https://data.monarchinitiative.org/ttl/omia.ttl 933 (0)
Other 0 (0)

Pathway Phenotype By Source

Production Query

Dev Query

source count
Total 33007 (0)
https://data.monarchinitiative.org/ttl/reactome.ttl 33007 (0)
https://data.monarchinitiative.org/ttl/hpoa.ttl 26449 (0)
https://data.monarchinitiative.org/ttl/coriell.ttl 26449 (0)
https://data.monarchinitiative.org/ttl/omim.ttl 26409 (0)
https://data.monarchinitiative.org/ttl/animalqtldb.ttl 6558 (0)
https://data.monarchinitiative.org/ttl/gwascatalog.ttl 2236 (0)
https://data.monarchinitiative.org/ttl/orphanet.ttl 204 (0)
Other 0 (0)

Variant Genotype Associations By Taxa

Production Query

Dev Query

species count
Total 828744 (+2152)
Mus musculus 652446 (0)
Danio rerio 163365 (+2152)
organism 7094 (0)
Homo sapiens 4533 (0)
sequence_alteration 1235 (0)
NCBITaxon:10102 20 (0)
Mus musculus molossinus 15 (0)
Mus musculus bactrianus 7 (0)
Mus spretus 6 (0)
Mus musculus musculus 5 (0)
Mus musculus castaneus 4 (0)
Rattus norvegicus 4 (0)
Mus 4 (0)
Macaca mulatta 2 (0)
Cricetulus griseus 1 (0)
Plecturocebus moloch 1 (0)
Saguinus labiatus 1 (0)
Bos taurus 1 (0)
Other 0 (0)

Variant Disease Associations By Source

Production Query

Dev Query

source count
Total 124730 (-540)
https://data.monarchinitiative.org/ttl/clinvar.nt 89486 (-512)
https://data.monarchinitiative.org/ttl/gwascatalog.ttl 33026 (0)
https://data.monarchinitiative.org/ttl/coriell.ttl 1028 (-22)
https://data.monarchinitiative.org/ttl/omim.ttl 1010 (-6)
https://data.monarchinitiative.org/ttl/udp.ttl 110 (0)
https://data.monarchinitiative.org/ttl/hpoa.ttl 35 (0)
https://data.monarchinitiative.org/ttl/mgi.ttl 30 (0)
https://data.monarchinitiative.org/ttl/mgi_slim.ttl 3 (0)
https://data.monarchinitiative.org/ttl/orphanet.ttl 3 (0)
https://data.monarchinitiative.org/ttl/impc.ttl 1 (0)
Other 0 (0)

Gene Pathway By Taxa

Production Query

Dev Query

source count
Total 204028 (+2)
Homo sapiens 39539 (-72)
Mus musculus 26978 (0)
Rattus norvegicus 23563 (0)
Canis lupus familiaris 19579 (0)
Sus scrofa 19468 (0)
Danio rerio 19119 (0)
Bos taurus 18816 (0)
Gallus gallus 13867 (0)
Drosophila melanogaster 11514 (0)
Caenorhabditis elegans 11345 (0)
Escherichia coli 93 (+91)
Bacillus megaterium 39 (+39)
Hepacivirus C 25 (+23)
Mycobacterium tuberculosis H37Rv 23 (0)
Human immunodeficiency virus 1 12 (-3)
Human gammaherpesvirus 8 11 (+11)
Pseudomonas aeruginosa 6 (-3)
NCBITaxon:528354 6 (+6)
Dengue virus group 4 (+3)
Influenzavirus A 3 (-1)
Bacillus subtilis 3 (+3)
Yellow fever virus 2 (-1)
Candida albicans SC5314 2 (+2)
Candida parapsilosis 2 (+2)
Hepatitis B virus 2 (-1)
Human herpesvirus 5 strain AD169 2 (0)
NCBITaxon:536056 1 (+1)
NCBITaxon:70865 1 (+1)
Human betaherpesvirus 5 1 (+1)
Enterococcus faecalis 1 (+1)
Staphylococcus aureus 1 (-1)
Other 0 (0)
Micrococcus luteus 0 (-3)
Lactobacillus acidophilus 0 (-1)
Escherichia coli ATCC 8739 0 (-2)
HIV-1 M:B_HXB2R 0 (-15)
Salmonella enterica subsp. enterica serovar Typhi 0 (-1)
Hepatitis C virus subtype 2a 0 (-1)
HIV-1 M:C_ETH2220 0 (-29)
NCBITaxon:521007 0 (-4)
Lactobacillus johnsonii NCC 533 0 (-17)
Helicobacter pylori 0 (-3)
Sindbis virus 0 (-4)
Human rhinovirus B3 0 (-5)
Human respiratory syncytial virus B 0 (-1)
Jaagsiekte sheep retrovirus 0 (-3)
Human alphaherpesvirus 1 0 (-2)
Neisseria meningitidis MC58 0 (-6)
NCBITaxon:526980 0 (-2)
NCBITaxon:1392869 0 (-1)

Variant Disease Associations By Taxa

Production Query

Dev Query

species count
Total 124730 (-540)
Homo sapiens 123975 (-525)
organism 737 (-15)
Mus musculus 18 (0)
Other 0 (0)

Case Gene By Source

Production Query

Dev Query

source count
Total 1292 (0)
https://data.monarchinitiative.org/ttl/coriell.ttl 1290 (0)
https://data.monarchinitiative.org/ttl/omim.ttl 1267 (0)
https://data.monarchinitiative.org/ttl/gwascatalog.ttl 127 (0)
https://data.monarchinitiative.org/ttl/udp.ttl 2 (0)
Other 0 (0)

Publication Phenotype By Source

Production Query

Dev Query

source count
Total 5075837 (+1149)
https://data.monarchinitiative.org/ttl/ncbigene.ttl 4175822 (+2894)
https://data.monarchinitiative.org/ttl/go.ttl 1038506 (+6)
https://data.monarchinitiative.org/ttl/biogrid.ttl 338834 (+329)
https://data.monarchinitiative.org/ttl/flybase.ttl 96829 (0)
https://data.monarchinitiative.org/ttl/sgd.ttl 86732 (0)
https://data.monarchinitiative.org/ttl/zfin.ttl 70660 (+157)
https://data.monarchinitiative.org/ttl/gwascatalog.ttl 61361 (+377)
https://data.monarchinitiative.org/ttl/mgi.ttl 57869 (0)
https://data.monarchinitiative.org/ttl/clinvar.nt 48051 (-4132)
https://data.monarchinitiative.org/ttl/wormbase.ttl 37087 (0)
https://data.monarchinitiative.org/ttl/mgi_slim.ttl 31983 (0)
https://data.monarchinitiative.org/ttl/omim.ttl 28540 (+53)
https://data.monarchinitiative.org/ttl/hgnc.ttl 28025 (+387)
https://data.monarchinitiative.org/ttl/zfinslim.ttl 13191 (0)
https://data.monarchinitiative.org/ttl/mmrrc.ttl 7505 (0)
https://data.monarchinitiative.org/ttl/impc.ttl 4630 (0)
https://data.monarchinitiative.org/ttl/animalqtldb.ttl 4613 (0)
https://data.monarchinitiative.org/ttl/rgd.ttl 184 (0)
https://data.monarchinitiative.org/ttl/hpoa.ttl 4 (0)
Other 0 (0)

Gene Phenotype Associations By Taxa

Production Query

Dev Query

species count
Total 677939 (+3028)
Mus musculus 212684 (0)
Homo sapiens 199275 (+2987)
Caenorhabditis elegans 76781 (0)
Saccharomyces cerevisiae S288C 68224 (0)
Danio rerio 55998 (0)
Drosophila melanogaster 49114 (0)
organism 10484 (0)
Rattus norvegicus 494 (0)
Canis lupus familiaris 460 (0)
Drosophila hydei 452 (0)
Drosophila subobscura 373 (0)
Drosophila virilis 337 (0)
Drosophila ananassae 246 (0)
Drosophila simulans 204 (0)
Drosophila pseudoobscura pseudoobscura 203 (0)
Drosophila willistoni 186 (0)
Hepacivirus C 171 (+131)
Bos taurus 160 (0)
NCBITaxon:7257 153 (0)
Drosophila funebris 132 (0)
Felis catus 128 (0)
NCBITaxon:30019 124 (0)
NCBITaxon:40372 118 (0)
NCBITaxon:30033 82 (0)
NCBITaxon:95109 82 (0)
Drosophila immigrans 72 (0)
NCBITaxon:7300 69 (0)
NCBITaxon:7246 63 (0)
Human immunodeficiency virus 1 60 (0)
NCBITaxon:30042 56 (0)
Ovis aries 55 (0)
Drosophila buzzatii 55 (0)
Drosophila mauritiana 52 (0)
Drosophila paulistorum 49 (0)
Pseudomonas aeruginosa 47 (+47)
Mycobacterium tuberculosis H37Rv 46 (+2)
Drosophila miranda 43 (0)
Drosophila littoralis 34 (0)
NCBITaxon:7218 33 (0)
Equus caballus 31 (0)
Sus scrofa 30 (0)
Drosophila ambigua 27 (0)
NCBITaxon:193351 22 (0)
Gallus gallus 19 (0)
Bacillus subtilis 18 (+18)
Phoenicopterus ruber 17 (0)
Capra hircus 17 (0)
NCBITaxon:125945 15 (0)
Human betaherpesvirus 5 15 (+15)
Drosophila persimilis 14 (0)
NCBITaxon:76712 14 (0)
NCBITaxon:7283 13 (0)
NCBITaxon:7282 13 (0)
Drosophila mojavensis 12 (0)
Candida parapsilosis 11 (+11)
NCBITaxon:64960 11 (0)
Drosophila auraria 11 (0)
Oryctolagus cuniculus 10 (0)
NCBITaxon:46794 10 (0)
Mustela putorius furo 10 (0)
Drosophila sechellia 9 (0)
NCBITaxon:30043 7 (0)
Yellow fever virus 7 (-1)
NCBITaxon:169138 7 (0)
NCBITaxon:161732 6 (0)
NCBITaxon:42026 6 (0)
Human herpesvirus 5 strain AD169 6 (0)
NCBITaxon:47314 6 (0)
Hepatitis B virus 5 (-74)
Influenzavirus A 4 (+3)
NCBITaxon:30028 4 (0)
Neovison vison 4 (0)
NCBITaxon:46822 4 (0)
NCBITaxon:40844 4 (0)
NCBITaxon:69217 4 (0)
Macaca mulatta 4 (0)
Drosophila takahashii 3 (0)
Oryzias latipes 3 (0)
Mesocricetus auratus 3 (0)
Drosophila equinoxialis 3 (0)
NCBITaxon:94111 3 (0)
Meleagris gallopavo 3 (0)
NCBITaxon:218680 3 (0)
NCBITaxon:198721 3 (0)
NCBITaxon:30036 3 (0)
Drosophila pseudoobscura bogotana 3 (0)
Influenza A virus (A/WSN/1933(H1N1)) 3 (0)
NCBITaxon:7252 3 (0)
NCBITaxon:30023 2 (0)
Staphylococcus aureus 2 (+2)
Drosophila eugracilis 2 (0)
NCBITaxon:7291 2 (0)
Drosophila arizonae 2 (0)
NCBITaxon:76946 2 (0)
NCBITaxon:141217 2 (0)
Bubalus bubalis 2 (0)
Drosophila erecta 2 (0)
NCBITaxon:133981 2 (0)
Drosophila madeirensis 2 (0)
NCBITaxon:134002 2 (0)
NCBITaxon:42062 2 (0)
NCBITaxon:195057 2 (0)
Human papillomavirus type 16 2 (+2)
NCBITaxon:133978 2 (0)
NCBITaxon:7270 2 (0)
NCBITaxon:7271 2 (0)
Vulpes vulpes 2 (0)
Human gammaherpesvirus 8 2 (+2)
Scaptodrosophila lebanonensis 2 (0)
NCBITaxon:30029 2 (0)
NCBITaxon:7284 1 (0)
NCBITaxon:9690 1 (0)
Hepatitis C virus subtype 1b 1 (0)
Dengue virus group 1 (0)
NCBITaxon:38666 1 (0)
NCBITaxon:7279 1 (0)
Mammuthus primigenius 1 (0)
NCBITaxon:310057 1 (0)
Drosophila yakuba 1 (0)
Bacillus megaterium 1 (+1)
NCBITaxon:103846 1 (0)
NCBITaxon:66368 1 (0)
NCBITaxon:61402 1 (0)
NCBITaxon:528354 1 (+1)
NCBITaxon:70340 1 (0)
Coturnix japonica 1 (0)
Ursus americanus 1 (0)
Bos grunniens 1 (0)
NCBITaxon:87177 1 (0)
Drosophila lutescens 1 (0)
Panthera tigris tigris 1 (0)
NCBITaxon:43597 1 (0)
NCBITaxon:7297 1 (0)
Numida meleagris 1 (0)
Vulpes lagopus 1 (0)
Peromyscus polionotus 1 (0)
Sciurus carolinensis 1 (0)
NCBITaxon:30056 1 (0)
NCBITaxon:27706 1 (0)
NCBITaxon:7231 1 (0)
NCBITaxon:57910 1 (0)
NCBITaxon:68352 1 (0)
NCBITaxon:32536 1 (0)
Micrococcus luteus 0 (-18)
Salmonella enterica subsp. enterica serovar Typhi 0 (-1)
Human rhinovirus B3 0 (-6)
Listeria innocua 0 (-1)
Other 0 (0)
Jaagsiekte sheep retrovirus 0 (-10)
Neisseria meningitidis MC58 0 (-50)
Human alphaherpesvirus 1 0 (-7)
Hepatitis C virus subtype 2a 0 (-4)
NCBITaxon:521007 0 (-1)
Sindbis virus 0 (-9)
Human adenovirus 5 0 (-1)
HIV-1 M:B_HXB2R 0 (-10)
NCBITaxon:1392869 0 (-1)

Gene Disease Causal Associations By Taxa

Production Query

Dev Query

species count
Total 10413 (-119)
Homo sapiens 9660 (-117)
Canis lupus familiaris 230 (0)
Bos taurus 120 (0)
Felis catus 62 (0)
Ovis aries 47 (0)
Gallus gallus 41 (0)
Equus caballus 39 (0)
Sus scrofa 38 (0)
Capra hircus 15 (0)
Mus musculus 12 (0)
Oryctolagus cuniculus 12 (0)
Coturnix japonica 9 (0)
Hepacivirus C 6 (+2)
Neovison vison 5 (0)
Equus asinus 5 (0)
Bubalus bubalis 4 (0)
Mesocricetus auratus 4 (0)
Mycobacterium tuberculosis H37Rv 4 (0)
Oryzias latipes 3 (0)
Pseudomonas aeruginosa 3 (+3)
Macaca mulatta 3 (0)
NCBITaxon:198806 3 (0)
Bos grunniens 3 (0)
Vulpes lagopus 3 (0)
Mustela putorius furo 2 (0)
Mammuthus primigenius 2 (0)
Bacillus subtilis 2 (+2)
Meleagris gallopavo 2 (0)
NCBITaxon:32536 2 (0)
NCBITaxon:48883 2 (0)
Macaca fascicularis 2 (0)
Vulpes vulpes 2 (0)
Canis latrans 1 (0)
NCBITaxon:103584 1 (0)
NCBITaxon:338458 1 (0)
Elephas maximus 1 (0)
Columba livia 1 (0)
Influenzavirus A 1 (+1)
NCBITaxon:9690 1 (0)
NCBITaxon:61386 1 (0)
Anas platyrhynchos 1 (0)
Astyanax 1 (0)
NCBITaxon:9691 1 (0)
NCBITaxon:61455 1 (0)
Peromyscus polionotus 1 (0)
NCBITaxon:38666 1 (0)
Rangifer tarandus 1 (0)
Cebus apella 1 (0)
Symphalangus syndactylus 1 (0)
NCBITaxon:57662 1 (0)
NCBITaxon:68352 1 (0)
Canis lupus 1 (0)
NCBITaxon:8523 1 (0)
NCBITaxon:328808 1 (0)
NCBITaxon:273489 1 (0)
NCBITaxon:255217 1 (0)
Sciurus carolinensis 1 (0)
NCBITaxon:54059 1 (0)
NCBITaxon:37029 1 (0)
Human immunodeficiency virus 1 1 (0)
NCBITaxon:57661 1 (0)
Macaca fuscata 1 (0)
Ctenopharyngodon idella 1 (0)
Dromaius novaehollandiae 1 (0)
Balaenoptera acutorostrata 1 (0)
NCBITaxon:120794 1 (0)
NCBITaxon:87177 1 (0)
NCBITaxon:61402 1 (0)
Camelus dromedarius 1 (0)
NCBITaxon:70340 1 (0)
Aepyceros melampus 1 (0)
Hylobates lar 1 (0)
Rattus norvegicus 1 (0)
Panthera tigris tigris 1 (0)
NCBITaxon:61406 1 (0)
NCBITaxon:34892 1 (0)
Cavia porcellus 1 (0)
NCBITaxon:46844 1 (0)
NCBITaxon:9579 1 (0)
Ursus americanus 1 (0)
NCBITaxon:345164 1 (0)
Numida meleagris 1 (0)
Delphinapterus leucas 1 (0)
Sus scrofa domesticus 1 (0)
Candida parapsilosis 1 (+1)
Takifugu rubripes 1 (0)
Bos mutus 1 (0)
Coturnix coturnix 1 (0)
NCBITaxon:9773 1 (0)
NCBITaxon:118797 1 (0)
Oreochromis niloticus 1 (0)
Phoenicopterus ruber 1 (0)
Panthera tigris 1 (0)
Gorilla gorilla 1 (0)
Peromyscus maniculatus 1 (0)
Pan troglodytes 1 (0)
Tursiops truncatus 1 (0)
NCBITaxon:43597 1 (0)
Micrococcus luteus 0 (-2)
Hepatitis B virus 0 (-2)
Jaagsiekte sheep retrovirus 0 (-1)
Neisseria meningitidis MC58 0 (-2)
Other 0 (0)
Human alphaherpesvirus 1 0 (-2)
Sindbis virus 0 (-2)

Gene Anatomy By Taxa

Production Query

Dev Query

source count
Total 1862910 (+14370)
Mus musculus 550723 (0)
Homo sapiens 532463 (+14565)
Danio rerio 367207 (0)
Drosophila melanogaster 197522 (0)
Rattus norvegicus 142624 (0)
Caenorhabditis elegans 71618 (0)
Escherichia coli 120 (+100)
Human immunodeficiency virus 1 100 (+20)
Hepacivirus C 100 (0)
Bacillus megaterium 40 (+40)
NCBITaxon:536056 20 (+20)
Candida albicans SC5314 20 (+20)
Influenzavirus A 20 (0)
Bacillus subtilis 20 (+20)
Hepatitis C virus subtype 1b 20 (0)
Candida parapsilosis 20 (+20)
Dengue virus group 20 (0)
Staphylococcus aureus 20 (0)
Hepatitis B virus 20 (-20)
Pseudomonas aeruginosa 20 (-8)
Human betaherpesvirus 5 20 (+20)
Enterococcus faecalis 20 (+20)
Mycobacterium tuberculosis H37Rv 20 (0)
Influenza A virus (A/WSN/1933(H1N1)) 20 (0)
Human gammaherpesvirus 8 20 (+20)
NCBITaxon:528354 20 (+20)
Human papillomavirus type 16 20 (+20)
Yellow fever virus 20 (-20)
Human herpesvirus 5 strain AD169 20 (0)
NCBITaxon:70865 13 (+13)
Other 0 (0)
Micrococcus luteus 0 (-20)
Lactobacillus acidophilus 0 (-20)
Escherichia coli ATCC 8739 0 (-20)
Salmonella enterica subsp. enterica serovar Typhi 0 (-20)
Neisseria meningitidis 0 (-20)
Hepatitis C virus subtype 2a 0 (-20)
HIV-1 M:C_ETH2220 0 (-20)
NCBITaxon:521007 0 (-20)
Human alphaherpesvirus 1 0 (-20)
Human rhinovirus B3 0 (-20)
Lactobacillus johnsonii NCC 533 0 (-20)
Helicobacter pylori 0 (-20)
Listeria innocua 0 (-20)
Sindbis virus 0 (-40)
Human adenovirus 5 0 (-20)
HIV-1 M:B_HXB2R 0 (-40)
Fusarium oxysporum species complex 0 (-20)
Human respiratory syncytial virus B 0 (-20)
Murine leukemia virus 0 (-20)
Jaagsiekte sheep retrovirus 0 (-20)
Neisseria meningitidis MC58 0 (-20)
NCBITaxon:526980 0 (-20)
NCBITaxon:1392869 0 (-20)

Gene Interactions By Subject Taxa

Production Query

Dev Query

source count
Total 3764850 (+1217)
Homo sapiens 1415233 (+1715)
Mus musculus 729810 (+7)
Rattus norvegicus 484928 (0)
Drosophila melanogaster 470895 (0)
Caenorhabditis elegans 365031 (0)
Danio rerio 292821 (0)
Escherichia coli 1736 (+1506)
Mycobacterium tuberculosis H37Rv 745 (+1)
Hepacivirus C 707 (+383)
Bacillus megaterium 624 (+624)
Candida albicans SC5314 378 (+378)
Yellow fever virus 368 (-395)
Human immunodeficiency virus 1 299 (-165)
Human gammaherpesvirus 8 290 (+290)
Bacillus subtilis 206 (+206)
Influenza A virus (A/WSN/1933(H1N1)) 189 (0)
Pseudomonas aeruginosa 169 (+21)
Candida parapsilosis 86 (+86)
NCBITaxon:536056 71 (+71)
NCBITaxon:528354 64 (+64)
Hepatitis C virus subtype 1b 48 (0)
Dengue virus group 36 (-46)
Other 27 (0)
Staphylococcus aureus 21 (-67)
NCBITaxon:70865 14 (+14)
Influenzavirus A 13 (-14)
Human betaherpesvirus 5 11 (+11)
Human papillomavirus type 16 10 (+10)
Human herpesvirus 5 strain AD169 10 (0)
Hepatitis B virus 7 (-50)
Enterococcus faecalis 3 (+3)
Micrococcus luteus 0 (-206)
Lactobacillus acidophilus 0 (-7)
Escherichia coli ATCC 8739 0 (-29)
HIV-1 M:B_HXB2R 0 (-257)
Salmonella enterica subsp. enterica serovar Typhi 0 (-83)
Neisseria meningitidis 0 (-35)
Hepatitis C virus subtype 2a 0 (-121)
HIV-1 M:C_ETH2220 0 (-764)
NCBITaxon:521007 0 (-119)
Human alphaherpesvirus 1 0 (-304)
Lactobacillus johnsonii NCC 533 0 (-100)
Helicobacter pylori 0 (-201)
Listeria innocua 0 (-28)
Sindbis virus 0 (-429)
Human adenovirus 5 0 (-59)
Human rhinovirus B3 0 (-321)
Fusarium oxysporum species complex 0 (-11)
Human respiratory syncytial virus B 0 (-92)
Murine leukemia virus 0 (-14)
Jaagsiekte sheep retrovirus 0 (-14)
Neisseria meningitidis MC58 0 (-147)
NCBITaxon:526980 0 (-91)
NCBITaxon:1392869 0 (-4)

Gene Disease Non-causal Associations By Taxa

Production Query

Dev Query

species count
Total 20486 (+1930)
Homo sapiens 20440 (+1917)
Hepacivirus C 22 (+16)
Human betaherpesvirus 5 4 (+4)
Mycobacterium tuberculosis H37Rv 3 (0)
Yellow fever virus 3 (0)
Dengue virus group 3 (+3)
Human herpesvirus 5 strain AD169 2 (0)
Staphylococcus aureus 2 (+2)
Candida parapsilosis 1 (+1)
Influenzavirus A 1 (+1)
Pseudomonas aeruginosa 1 (-1)
Influenza A virus (A/WSN/1933(H1N1)) 1 (0)
Human immunodeficiency virus 1 1 (-4)
Human papillomavirus type 16 1 (+1)
Bacillus megaterium 1 (+1)
Other 0 (0)
Human alphaherpesvirus 1 0 (-5)
HIV-1 M:B_HXB2R 0 (-2)
Salmonella enterica subsp. enterica serovar Typhi 0 (-1)
Neisseria meningitidis MC58 0 (-2)
NCBITaxon:1392869 0 (-1)

Variant Phenotype Associations By Source

Production Query

Dev Query

source count
Total 1455022 (-2273593)
https://data.monarchinitiative.org/ttl/mgi.ttl 735504 (0)
https://data.monarchinitiative.org/ttl/wormbase.ttl 192960 (0)
https://data.monarchinitiative.org/ttl/zfin.ttl 165148 (+763)
https://data.monarchinitiative.org/ttl/animalqtldb.ttl 124074 (-89863)
https://data.monarchinitiative.org/ttl/flybase.ttl 116655 (0)
https://data.monarchinitiative.org/ttl/gwascatalog.ttl 98197 (-70488)
https://data.monarchinitiative.org/ttl/impc.ttl 58252 (0)
https://data.monarchinitiative.org/ttl/mgi_slim.ttl 33585 (0)
https://data.monarchinitiative.org/ttl/hpoa.ttl 10316 (-2183533)
https://data.monarchinitiative.org/ttl/clinvar.nt 126 (-2109268)
https://data.monarchinitiative.org/ttl/sgd.ttl 23 (0)
https://data.monarchinitiative.org/ttl/coriell.ttl 3 (0)
https://data.monarchinitiative.org/ttl/omim.ttl 2 (-8262)
Other 0 (0)
https://data.monarchinitiative.org/ttl/orphanet.ttl 0 (-23)

Case Model By Source

Production Query

Dev Query

source count
https://data.monarchinitiative.org/ttl/coriell.ttl 29866 (0)
Total 29866 (0)
Other 0 (0)

Gene Phenotype Associations By Source

Production Query

Dev Query

source count
Total 677939 (+3028)
https://data.monarchinitiative.org/ttl/mgi_slim.ttl 209430 (0)
https://data.monarchinitiative.org/ttl/hpoa.ttl 151196 (+2717)
https://data.monarchinitiative.org/ttl/orphanet.ttl 114167 (+2273)
https://data.monarchinitiative.org/ttl/clinvar.nt 101382 (+1226)
https://data.monarchinitiative.org/ttl/omim.ttl 87888 (+1448)
https://data.monarchinitiative.org/ttl/wormbase.ttl 76781 (0)
https://data.monarchinitiative.org/ttl/sgd.ttl 68224 (0)
https://data.monarchinitiative.org/ttl/zfinslim.ttl 61892 (0)
https://data.monarchinitiative.org/ttl/flybase.ttl 57210 (0)
https://data.monarchinitiative.org/ttl/gwascatalog.ttl 48993 (+311)
https://data.monarchinitiative.org/ttl/impc.ttl 17417 (0)
https://data.monarchinitiative.org/ttl/mgi.ttl 16087 (0)
https://data.monarchinitiative.org/ttl/coriell.ttl 7151 (0)
https://data.monarchinitiative.org/ttl/mmrrc.ttl 5164 (0)
https://data.monarchinitiative.org/ttl/omia.ttl 981 (0)
https://data.monarchinitiative.org/ttl/monarch.ttl 960 (0)
https://data.monarchinitiative.org/ttl/rgd.ttl 489 (0)
Other 0 (0)

Case Disease By Source

Production Query

Dev Query

source count
Total 11337 (-416)
https://data.monarchinitiative.org/ttl/coriell.ttl 11299 (-416)
https://data.monarchinitiative.org/ttl/udp.ttl 38 (0)
Other 0 (0)

Publication Disease By Source

Production Query

Dev Query

source count
Total 292305 (-377440)
https://data.monarchinitiative.org/ttl/ctd.ttl 90755 (0)
https://data.monarchinitiative.org/ttl/zfin.ttl 82662 (-3896)
https://data.monarchinitiative.org/ttl/clinvar.nt 54094 (-311)
https://data.monarchinitiative.org/ttl/wormbase.ttl 24884 (0)
https://data.monarchinitiative.org/ttl/go.ttl 20101 (-48608)
https://data.monarchinitiative.org/ttl/ncbigene.ttl 15283 (-348680)
https://data.monarchinitiative.org/ttl/mgi.ttl 14171 (0)
https://data.monarchinitiative.org/ttl/omia.ttl 13765 (0)
https://data.monarchinitiative.org/ttl/flybase.ttl 3857 (0)
https://data.monarchinitiative.org/ttl/coriell.ttl 3842 (-393)
https://data.monarchinitiative.org/ttl/gwascatalog.ttl 2316 (0)
https://data.monarchinitiative.org/ttl/biogrid.ttl 1692 (-54151)
https://data.monarchinitiative.org/ttl/hpoa.ttl 1463 (-18)
https://data.monarchinitiative.org/ttl/mgi_slim.ttl 751 (0)
https://data.monarchinitiative.org/ttl/hgnc.ttl 425 (-3942)
https://data.monarchinitiative.org/ttl/monarch.ttl 184 (0)
https://data.monarchinitiative.org/ttl/mmrrc.ttl 102 (0)
Other 0 (0)

Gene Variant Associations By Taxa

Production Query

Dev Query

species count
Total 1398327 (-63436)
Mus musculus 861738 (0)
Drosophila melanogaster 181505 (0)
Homo sapiens 161522 (-63723)
Caenorhabditis elegans 116437 (0)
Danio rerio 39383 (+284)
Bos taurus 16962 (0)
organism 9749 (+3)
Sus scrofa 3353 (0)
Gallus gallus 1687 (0)
Drosophila ananassae 601 (0)
Drosophila virilis 571 (0)
Drosophila subobscura 536 (0)
Drosophila hydei 523 (0)
Drosophila simulans 433 (0)
Drosophila pseudoobscura pseudoobscura 330 (0)
Equus caballus 235 (0)
Drosophila willistoni 206 (0)
Rattus norvegicus 180 (0)
Drosophila funebris 177 (0)
NCBITaxon:40372 149 (0)
NCBITaxon:30033 123 (0)
Drosophila mauritiana 122 (0)
NCBITaxon:7257 122 (0)
Drosophila buzzatii 121 (0)
NCBITaxon:95109 95 (0)
Drosophila immigrans 91 (0)
NCBITaxon:30019 88 (0)
Drosophila miranda 88 (0)
Hepacivirus C 76 (+62)
NCBITaxon:7246 58 (0)
NCBITaxon:7300 53 (0)
NCBITaxon:76712 52 (0)
NCBITaxon:7231 50 (0)
Drosophila mojavensis 44 (0)
Drosophila affinidisjuncta 42 (0)
Drosophila teissieri 41 (0)
Drosophila persimilis 39 (0)
NCBITaxon:30042 39 (0)
Drosophila littoralis 35 (0)
Drosophila paulistorum 32 (0)
Drosophila takahashii 30 (0)
Pseudomonas aeruginosa 29 (+28)
Drosophila lutescens 27 (0)
Mycobacterium tuberculosis H37Rv 27 (0)
NCBITaxon:7218 26 (0)
Drosophila arizonae 26 (0)
NCBITaxon:111875 24 (0)
NCBITaxon:60717 24 (0)
Candida parapsilosis 23 (+23)
Human immunodeficiency virus 1 19 (-5)
Drosophila ambigua 19 (0)
NCBITaxon:42026 18 (0)
NCBITaxon:7283 18 (0)
NCBITaxon:193351 17 (0)
NCBITaxon:125945 14 (0)
Drosophila auraria 14 (0)
NCBITaxon:7282 14 (0)
Drosophila sechellia 13 (0)
Drosophila hawaiiensis 12 (0)
NCBITaxon:64960 12 (0)
Bacillus subtilis 10 (+10)
Human betaherpesvirus 5 10 (+10)
NCBITaxon:30036 9 (0)
Drosophila yakuba 9 (0)
NCBITaxon:161732 8 (0)
Yellow fever virus 8 (-1)
NCBITaxon:195057 8 (0)
NCBITaxon:47314 8 (0)
Ovis aries 7 (0)
Scaptodrosophila lebanonensis 7 (0)
NCBITaxon:30043 6 (0)
NCBITaxon:46794 6 (0)
NCBITaxon:7291 6 (0)
NCBITaxon:94111 6 (0)
Human herpesvirus 5 strain AD169 6 (0)
Drosophila grimshawi 6 (0)
NCBITaxon:77771 5 (0)
NCBITaxon:76946 5 (0)
NCBITaxon:103846 5 (0)
Hepatitis B virus 4 (-15)
Drosophila eugracilis 4 (0)
NCBITaxon:30023 4 (0)
Canis lupus familiaris 4 (0)
NCBITaxon:169138 4 (0)
Influenza A virus (A/WSN/1933(H1N1)) 4 (0)
Hepatitis C virus subtype 1b 3 (0)
Escherichia coli 3 (+3)
NCBITaxon:218680 3 (0)
NCBITaxon:7249 3 (0)
NCBITaxon:69217 3 (0)
Human papillomavirus type 16 3 (+3)
Staphylococcus aureus 3 (+3)
Influenzavirus A 2 (+1)
Xenopus (Silurana) tropicalis 2 (0)
Dengue virus group 2 (0)
NCBITaxon:7279 2 (0)
NCBITaxon:30028 2 (0)
Drosophila equinoxialis 2 (0)
NCBITaxon:46822 2 (0)
NCBITaxon:42062 2 (0)
NCBITaxon:40844 2 (0)
Pan troglodytes 2 (0)
Drosophila erecta 2 (0)
NCBITaxon:7297 2 (0)
Drosophila madeirensis 2 (0)
NCBITaxon:57910 2 (0)
Drosophila pseudoobscura bogotana 2 (0)
NCBITaxon:30056 2 (0)
Human gammaherpesvirus 8 2 (+2)
NCBITaxon:7284 1 (0)
Drosophila borealis 1 (0)
Drosophila orena 1 (0)
Saccharomyces cerevisiae S288C 1 (0)
NCBITaxon:310057 1 (0)
Bacillus megaterium 1 (+1)
NCBITaxon:66368 1 (0)
NCBITaxon:133978 1 (0)
NCBITaxon:141217 1 (0)
NCBITaxon:198721 1 (0)
NCBITaxon:133981 1 (0)
NCBITaxon:134002 1 (0)
NCBITaxon:528354 1 (+1)
NCBITaxon:7248 1 (0)
NCBITaxon:7270 1 (0)
Arabidopsis thaliana 1 (0)
NCBITaxon:7271 1 (0)
NCBITaxon:7252 1 (0)
NCBITaxon:30029 1 (0)
Micrococcus luteus 0 (-26)
Salmonella enterica subsp. enterica serovar Typhi 0 (-2)
Listeria innocua 0 (-1)
Human rhinovirus B3 0 (-9)
Other 0 (0)
Jaagsiekte sheep retrovirus 0 (-11)
Neisseria meningitidis MC58 0 (-30)
Hepatitis C virus subtype 2a 0 (-6)
NCBITaxon:521007 0 (-1)
Human alphaherpesvirus 1 0 (-20)
Sindbis virus 0 (-7)
Human adenovirus 5 0 (-3)
HIV-1 M:B_HXB2R 0 (-9)
NCBITaxon:1392869 0 (-1)

Gene Interactions By Source

Production Query

Dev Query

source count
Total 3764850 (+1217)
https://data.monarchinitiative.org/ttl/string.ttl 2982400 (+34)
https://data.monarchinitiative.org/ttl/biogrid.ttl 931518 (+1185)
Other 0 (0)

Disease Phenotype Associations By Source

Production Query

Dev Query

species count
Total 155931 (-713)
https://data.monarchinitiative.org/ttl/hpoa.ttl 153888 (-713)
https://data.monarchinitiative.org/ttl/monarch.ttl 1768 (0)
https://data.monarchinitiative.org/ttl/omia.ttl 221 (0)
https://data.monarchinitiative.org/ttl/omim.ttl 2 (0)
Other 0 (0)

Publication Model By Source

Production Query

Dev Query

source count
Total 48786 (+18)
https://data.monarchinitiative.org/ttl/wormbase.ttl 15528 (0)
https://data.monarchinitiative.org/ttl/mgi.ttl 14965 (0)
https://data.monarchinitiative.org/ttl/go.ttl 12752 (0)
https://data.monarchinitiative.org/ttl/coriell.ttl 8639 (0)
https://data.monarchinitiative.org/ttl/ncbigene.ttl 8024 (0)
https://data.monarchinitiative.org/ttl/flybase.ttl 4098 (0)
https://data.monarchinitiative.org/ttl/zfin.ttl 2921 (+18)
https://data.monarchinitiative.org/ttl/omia.ttl 2635 (0)
https://data.monarchinitiative.org/ttl/biogrid.ttl 957 (0)
https://data.monarchinitiative.org/ttl/mgi_slim.ttl 781 (0)
https://data.monarchinitiative.org/ttl/mmrrc.ttl 102 (0)
Other 0 (0)

Disease Phenotype Associations By Taxa

Production Query

Dev Query

species count
Total 155931 (-713)
Other 145533 (-665)
Homo sapiens 10398 (-48)

Gene Pathway By Source

Production Query

Dev Query

source count
Total 204028 (+2)
https://data.monarchinitiative.org/ttl/reactome.ttl 204028 (+2)
Other 0 (0)

Relations

Production Query

Dev Query

relation count
Total 34381285 (-2682600)
is_about 8570856 (-272614)
interacts with 3673680 (+1176)
in paralogy relationship with 2930997 (+3538)
Source 2675014 (-102763)
has phenotype 2583833 (-2271303)
in 1 to 1 orthology relationship with 2552726 (+381)
Other 2538209 (+3212)
in orthology relationship with 2108305 (+4397)
expressed in 1862910 (+14370)
involved_in 1217051 (-297)
is_allele_of 852989 (+176)
is part of 470272 (0)
enables 416744 (0)
has_genotype 404692 (+4)
has_affected_feature 347383 (-63798)
in xenology relationship with 289221 (+4)
contributes to condition 198749 (+2319)
is marker for 124405 (-4)
mentions 105123 (+6)
targets_gene 66774 (+93)
pathogenic_for_condition 66469 (-432)
is_expression_variant_of 64235 (+21)
colocalizes with 60485 (+32)
is_reference_allele_of 58315 (0)
is model of 37735 (-930)
genetically interacts with 30685 (+9)
derives_from 29866 (0)
likely_pathogenic_for_condition 23377 (-125)
causes condition 10572 (-121)
sequence_derives_from 8629 (+72)
is causal susceptibility factor for 459 (0)
contributes to 437 (-23)
disease has basis in feature 54 (0)
is causal germline mutation partially giving rise to 32 (0)
is_variant_allele_of 2 (0)

Model Disease Associations By Taxa

Production Query

Dev Query

species count
Total 26436 (-514)
Homo sapiens 12021 (-516)
Mus musculus 7856 (0)
Caenorhabditis elegans 3328 (0)
Drosophila melanogaster 1207 (0)
Danio rerio 967 (+2)
Carnivora 684 (0)
Ruminantia 144 (0)
organism 98 (0)
Felidae 55 (0)
Equidae 34 (0)
sequence_alteration 18 (0)
Sus 5 (0)
Suidae 5 (0)
Gallus gallus 3 (0)
Bos taurus 3 (0)
NCBITaxon:477815 2 (0)
Other 2 (0)
Bovidae 2 (0)
Viridiplantae 1 (0)
Mus musculus castaneus 1 (0)

Case Phenotype By Source

Production Query

Dev Query

source count
Total 1085 (0)
https://data.monarchinitiative.org/ttl/udp.ttl 1076 (0)
https://data.monarchinitiative.org/ttl/coriell.ttl 9 (0)
Other 0 (0)

Gene Homology By Subject Taxa

Production Query

Dev Query

source count
Total 7881249 (+8320)
Mus musculus 1041581 (+196)
Danio rerio 921927 (+537)
Rattus norvegicus 827150 (+171)
Caenorhabditis elegans 678047 (+119)
Sus scrofa 614982 (+95)
Homo sapiens 613446 (+6180)
Drosophila melanogaster 421371 (+197)
Canis lupus familiaris 360894 (+83)
Bos taurus 350282 (+92)
Equus caballus 323831 (+81)
Xenopus (Silurana) tropicalis 283761 (+90)
Gallus gallus 277402 (+88)
Pan troglodytes 211245 (+63)
Monodelphis domestica 199203 (+108)
Macaca mulatta 186173 (+101)
Felis catus 179290 (+75)
Anolis carolinensis 175165 (+109)
Arabidopsis thaliana 113918 (+118)
Saccharomyces cerevisiae S288C 82624 (+62)
Ornithorhynchus anatinus 17384 (+4)
organism 336 (+2)
Escherichia coli 216 (+160)
Human immunodeficiency virus 1 197 (+124)
Hepacivirus C 173 (+58)
Bacillus megaterium 74 (+74)
Enterococcus faecalis 67 (+67)
Human betaherpesvirus 5 63 (+63)
Hepatitis B virus 53 (-22)
Bacillus subtilis 43 (+43)
Hepatitis C virus subtype 1b 41 (0)
Candida albicans SC5314 37 (+37)
Mycobacterium tuberculosis H37Rv 37 (0)
Human papillomavirus type 16 35 (+35)
Influenzavirus A 31 (-12)
Human gammaherpesvirus 8 30 (+30)
NCBITaxon:536056 23 (+23)
Influenza A virus (A/WSN/1933(H1N1)) 19 (0)
Candida parapsilosis 17 (+17)
Human herpesvirus 5 strain AD169 17 (0)
Pseudomonas aeruginosa 15 (-52)
NCBITaxon:70865 14 (+14)
Yellow fever virus 13 (-13)
Staphylococcus aureus 11 (-16)
NCBITaxon:528354 10 (+10)
Dengue virus group 1 (-60)
Other 0 (0)
Micrococcus luteus 0 (-43)
Lactobacillus acidophilus 0 (-29)
Escherichia coli ATCC 8739 0 (-57)
Salmonella enterica subsp. enterica serovar Typhi 0 (-131)
Neisseria meningitidis 0 (-16)
Hepatitis C virus subtype 2a 0 (-16)
HIV-1 M:C_ETH2220 0 (-23)
NCBITaxon:521007 0 (-39)
Human rhinovirus B3 0 (-21)
Lactobacillus johnsonii NCC 533 0 (-9)
Helicobacter pylori 0 (-17)
Listeria innocua 0 (-15)
Sindbis virus 0 (-45)
HIV-1 M:B_HXB2R 0 (-42)
Fusarium oxysporum species complex 0 (-15)
Human adenovirus 5 0 (-48)
Human respiratory syncytial virus B 0 (-39)
Murine leukemia virus 0 (-51)
Jaagsiekte sheep retrovirus 0 (-15)
Human alphaherpesvirus 1 0 (-51)
Neisseria meningitidis MC58 0 (-16)
NCBITaxon:526980 0 (-58)
NCBITaxon:1392869 0 (-35)

Variant Genotype Associations By Source

Production Query

Dev Query

source count
Total 828744 (+2152)
https://data.monarchinitiative.org/ttl/mmrrc.ttl 369418 (0)
https://data.monarchinitiative.org/ttl/mgi.ttl 277370 (0)
https://data.monarchinitiative.org/ttl/zfin.ttl 163365 (+2152)
https://data.monarchinitiative.org/ttl/impc.ttl 72181 (0)
https://data.monarchinitiative.org/ttl/coriell.ttl 7276 (0)
https://data.monarchinitiative.org/ttl/udp.ttl 112 (0)
Other 0 (0)

Publication Variant By Source

Production Query

Dev Query

source count
Total 5414823 (+533)
https://data.monarchinitiative.org/ttl/ncbigene.ttl 4299396 (0)
https://data.monarchinitiative.org/ttl/animalqtldb.ttl 250257 (0)
https://data.monarchinitiative.org/ttl/clinvar.nt 159479 (0)
https://data.monarchinitiative.org/ttl/mgi.ttl 155924 (0)
https://data.monarchinitiative.org/ttl/flybase.ttl 151798 (0)
https://data.monarchinitiative.org/ttl/gwascatalog.ttl 115064 (0)
https://data.monarchinitiative.org/ttl/wormbase.ttl 107268 (0)
https://data.monarchinitiative.org/ttl/zfin.ttl 69693 (+444)
https://data.monarchinitiative.org/ttl/omim.ttl 43609 (+91)
https://data.monarchinitiative.org/ttl/coriell.ttl 38373 (0)
https://data.monarchinitiative.org/ttl/hgnc.ttl 32415 (0)
https://data.monarchinitiative.org/ttl/go.ttl 29183 (+2)
https://data.monarchinitiative.org/ttl/mgi_slim.ttl 7609 (0)
https://data.monarchinitiative.org/ttl/kegg.ttl 6195 (+1)
https://data.monarchinitiative.org/ttl/omia.ttl 5191 (0)
https://data.monarchinitiative.org/ttl/impc.ttl 4580 (0)
https://data.monarchinitiative.org/ttl/mmrrc.ttl 1606 (0)
https://data.monarchinitiative.org/ttl/ctd.ttl 1147 (0)
https://data.monarchinitiative.org/ttl/biogrid.ttl 555 (-329)
https://data.monarchinitiative.org/ttl/hpoa.ttl 120 (0)
https://data.monarchinitiative.org/ttl/sgd.ttl 29 (0)
Other 0 (0)

SciGraph Queries

Genotypes

Production Query

Dev Query

field count
genotypes 336563 (+662)

Genes

Production Query

Dev Query

field count
genes 1836488 (+3648)

Sequence Features

Production Query

Dev Query

field count
features 7187864 (+493)

Gene Variant Mix-ups

Production Query

Dev Query

field count
variant 5179 (0)

Variant Loci

Production Query

Dev Query

field count
variants 851849 (+128)

Reagent Targeted Gene

Production Query

Dev Query

field count
rtg 106243 (+21)

Gene Disease Mix-ups

Production Query

Dev Query

field count
gene 114 (-21360)

Disease Phenotype Mix-ups

Production Query

Dev Query

field count
disease 131 (0)

Genes in more than one taxa

Production Query

Dev Query

field count
genes 313 (0)

nodes with subClassOf cycles (depth 2)

Production Query

Dev Query

field count
node_count 2 (0)

Number of edges connected to owl:Nothing

Production Query

Dev Query

field count
nothing 0 (0)

nodes with subClassOf cycles (depth 1)

Production Query

Dev Query

field count
node_count 127 (0)