Solr Queries

Variant Phenotype Associations By Source

Production Query

Dev Query

source count
Total 1455022 (-2273593)
https://data.monarchinitiative.org/ttl/mgi.ttl 735504 (0)
https://data.monarchinitiative.org/ttl/wormbase.ttl 192960 (0)
https://data.monarchinitiative.org/ttl/zfin.ttl 165148 (+763)
https://data.monarchinitiative.org/ttl/animalqtldb.ttl 124074 (-89863)
https://data.monarchinitiative.org/ttl/flybase.ttl 116655 (0)
https://data.monarchinitiative.org/ttl/gwascatalog.ttl 98197 (-70488)
https://data.monarchinitiative.org/ttl/impc.ttl 58252 (0)
https://data.monarchinitiative.org/ttl/mgi_slim.ttl 33585 (0)
https://data.monarchinitiative.org/ttl/hpoa.ttl 10316 (-2183533)
https://data.monarchinitiative.org/ttl/clinvar.nt 126 (-2109268)
https://data.monarchinitiative.org/ttl/sgd.ttl 23 (0)
https://data.monarchinitiative.org/ttl/coriell.ttl 3 (0)
https://data.monarchinitiative.org/ttl/omim.ttl 2 (-8262)
Other 0 (0)
https://data.monarchinitiative.org/ttl/orphanet.ttl 0 (-23)

Publication Disease By Source

Production Query

Dev Query

source count
Total 292305 (-377440)
https://data.monarchinitiative.org/ttl/ctd.ttl 90755 (0)
https://data.monarchinitiative.org/ttl/zfin.ttl 82662 (-3896)
https://data.monarchinitiative.org/ttl/clinvar.nt 54094 (-311)
https://data.monarchinitiative.org/ttl/wormbase.ttl 24884 (0)
https://data.monarchinitiative.org/ttl/go.ttl 20101 (-48608)
https://data.monarchinitiative.org/ttl/ncbigene.ttl 15283 (-348680)
https://data.monarchinitiative.org/ttl/mgi.ttl 14171 (0)
https://data.monarchinitiative.org/ttl/omia.ttl 13765 (0)
https://data.monarchinitiative.org/ttl/flybase.ttl 3857 (0)
https://data.monarchinitiative.org/ttl/coriell.ttl 3842 (-393)
https://data.monarchinitiative.org/ttl/gwascatalog.ttl 2316 (0)
https://data.monarchinitiative.org/ttl/biogrid.ttl 1692 (-54151)
https://data.monarchinitiative.org/ttl/hpoa.ttl 1463 (-18)
https://data.monarchinitiative.org/ttl/mgi_slim.ttl 751 (0)
https://data.monarchinitiative.org/ttl/hgnc.ttl 425 (-3942)
https://data.monarchinitiative.org/ttl/monarch.ttl 184 (0)
https://data.monarchinitiative.org/ttl/mmrrc.ttl 102 (0)
Other 0 (0)

Gene Anatomy By Taxa

Production Query

Dev Query

source count
Total 1862910 (+14370)
Mus musculus 550723 (0)
Homo sapiens 532216 (+14318)
Danio rerio 367207 (0)
Drosophila melanogaster 197522 (0)
Rattus norvegicus 142624 (0)
Caenorhabditis elegans 71618 (0)
Human immunodeficiency virus 1 140 (+60)
Hepacivirus C 100 (0)
Escherichia coli 60 (+40)
Human gammaherpesvirus 8 40 (+40)
Dengue virus group 40 (+20)
Hepatitis C virus subtype 2a 40 (+20)
Human alphaherpesvirus 1 40 (+20)
NCBITaxon:528354 20 (+20)
Yellow fever virus 20 (-20)
[Candida] glabrata 20 (+20)
Influenza A virus (A/chicken/Guangdong/1/2001(H5N1)) 20 (+20)
Sindbis virus 20 (-20)
Mycobacterium tuberculosis 20 (+20)
Salmonella 20 (+20)
Bacillus megaterium 20 (+20)
Influenzavirus A 20 (0)
Bacillus subtilis subsp. subtilis str. JH642 20 (+20)
Candida albicans 20 (+20)
Staphylococcus aureus subsp. aureus 20 (+20)
Human betaherpesvirus 5 20 (+20)
Murine leukemia virus 20 (0)
Human papillomavirus type 16 20 (+20)
Staphylococcus saprophyticus 20 (+20)
NCBITaxon:521007 20 (0)
NCBITaxon:70865 20 (+20)
Influenza A virus (A/Puerto Rico/8/34/Mount Sinai(H1N1)) 20 (+20)
Enterococcus faecium 20 (+20)
Mycoplasma pneumoniae M129 20 (+20)
Lactobacillus acidophilus 20 (0)
Simian virus 40 20 (+20)
Staphylococcus aureus 20 (0)
Acinetobacter baumannii 20 (+20)
Human alphaherpesvirus 3 20 (+20)
Hepatitis C virus subtype 1a 20 (+20)
HIV-1 M:C_ETH2220 0 (-20)
Listeria innocua 0 (-20)
Neisseria meningitidis 0 (-20)
Other 0 (0)
NCBITaxon:1392869 0 (-20)
Human respiratory syncytial virus B 0 (-20)
Jaagsiekte sheep retrovirus 0 (-20)
Salmonella enterica subsp. enterica serovar Typhi 0 (-20)
HIV-1 M:B_HXB2R 0 (-40)
Lactobacillus johnsonii NCC 533 0 (-20)
Escherichia coli ATCC 8739 0 (-20)
Human herpesvirus 5 strain AD169 0 (-20)
Pseudomonas aeruginosa 0 (-28)
Mycobacterium tuberculosis H37Rv 0 (-20)
Fusarium oxysporum species complex 0 (-20)
Helicobacter pylori 0 (-20)
NCBITaxon:526980 0 (-20)
Hepatitis C virus subtype 1b 0 (-20)
Micrococcus luteus 0 (-20)
Influenza A virus (A/WSN/1933(H1N1)) 0 (-20)
Human rhinovirus B3 0 (-20)
Human adenovirus 5 0 (-20)
Neisseria meningitidis MC58 0 (-20)
Hepatitis B virus 0 (-40)

Gene Phenotype Associations By Source

Production Query

Dev Query

source count
Total 674996 (+85)
https://data.monarchinitiative.org/ttl/mgi_slim.ttl 209430 (0)
https://data.monarchinitiative.org/ttl/hpoa.ttl 148253 (-226)
https://data.monarchinitiative.org/ttl/orphanet.ttl 111829 (-65)
https://data.monarchinitiative.org/ttl/clinvar.nt 99835 (-321)
https://data.monarchinitiative.org/ttl/omim.ttl 86516 (+76)
https://data.monarchinitiative.org/ttl/wormbase.ttl 76781 (0)
https://data.monarchinitiative.org/ttl/sgd.ttl 68224 (0)
https://data.monarchinitiative.org/ttl/zfinslim.ttl 61892 (0)
https://data.monarchinitiative.org/ttl/flybase.ttl 57210 (0)
https://data.monarchinitiative.org/ttl/gwascatalog.ttl 48993 (+311)
https://data.monarchinitiative.org/ttl/impc.ttl 17417 (0)
https://data.monarchinitiative.org/ttl/mgi.ttl 16087 (0)
https://data.monarchinitiative.org/ttl/coriell.ttl 7151 (0)
https://data.monarchinitiative.org/ttl/mmrrc.ttl 5164 (0)
https://data.monarchinitiative.org/ttl/omia.ttl 981 (0)
https://data.monarchinitiative.org/ttl/monarch.ttl 960 (0)
https://data.monarchinitiative.org/ttl/rgd.ttl 489 (0)
Other 0 (0)

Genotype Phenotype Associations By Taxa

Production Query

Dev Query

species count
Total 560999 (+383)
Mus musculus 358862 (0)
Danio rerio 107498 (+383)
Homo sapiens 75564 (0)
organism 17500 (0)
sequence_alteration 1520 (0)
Mus musculus molossinus 13 (0)
Mus musculus castaneus 12 (0)
NCBITaxon:477815 12 (0)
NCBITaxon:10102 8 (0)
Mus 4 (0)
Mus musculus musculus 3 (0)
Mus spretus 2 (0)
Mus musculus bactrianus 1 (0)
Other 0 (0)

Gene Disease Non-causal Associations By Taxa

Production Query

Dev Query

species count
Total 20580 (+2024)
Homo sapiens 20541 (+2018)
Human immunodeficiency virus 1 8 (+3)
Human betaherpesvirus 5 4 (+4)
Hepacivirus C 3 (-3)
Human gammaherpesvirus 8 3 (+3)
Mycoplasma pneumoniae M129 3 (+3)
Yellow fever virus 3 (0)
Hepatitis C virus subtype 2a 3 (+3)
Dengue virus group 3 (+3)
Escherichia coli 2 (+2)
Bacillus subtilis subsp. subtilis str. JH642 2 (+2)
[Candida] glabrata 1 (+1)
Influenza A virus (A/chicken/Guangdong/1/2001(H5N1)) 1 (+1)
Candida albicans 1 (+1)
Human papillomavirus type 16 1 (+1)
Human alphaherpesvirus 3 1 (+1)
Salmonella enterica subsp. enterica serovar Typhi 0 (-1)
Human alphaherpesvirus 1 0 (-5)
Mycobacterium tuberculosis H37Rv 0 (-3)
Human herpesvirus 5 strain AD169 0 (-2)
Pseudomonas aeruginosa 0 (-2)
Other 0 (0)
NCBITaxon:1392869 0 (-1)
HIV-1 M:B_HXB2R 0 (-2)
Influenza A virus (A/WSN/1933(H1N1)) 0 (-1)
Neisseria meningitidis MC58 0 (-2)

Gene Pathway By Source

Production Query

Dev Query

source count
Total 204028 (+2)
https://data.monarchinitiative.org/ttl/reactome.ttl 204028 (+2)
Other 0 (0)

Gene Disease Causal Associations By Taxa

Production Query

Dev Query

species count
Total 10413 (-119)
Homo sapiens 9663 (-114)
Canis lupus familiaris 230 (0)
Bos taurus 120 (0)
Felis catus 62 (0)
Ovis aries 47 (0)
Gallus gallus 41 (0)
Equus caballus 39 (0)
Sus scrofa 38 (0)
Capra hircus 15 (0)
Oryctolagus cuniculus 12 (0)
Mus musculus 12 (0)
Coturnix japonica 9 (0)
Neovison vison 5 (0)
Equus asinus 5 (0)
Bubalus bubalis 4 (0)
Mycoplasma pneumoniae M129 4 (+4)
Mesocricetus auratus 4 (0)
Bos grunniens 3 (0)
Macaca mulatta 3 (0)
Vulpes lagopus 3 (0)
NCBITaxon:198806 3 (0)
Human gammaherpesvirus 8 3 (+3)
Oryzias latipes 3 (0)
Mammuthus primigenius 2 (0)
Meleagris gallopavo 2 (0)
NCBITaxon:48883 2 (0)
Macaca fascicularis 2 (0)
Vulpes vulpes 2 (0)
Candida albicans 2 (+2)
Human alphaherpesvirus 1 2 (0)
Mustela putorius furo 2 (0)
NCBITaxon:32536 2 (0)
Rangifer tarandus 1 (0)
Pan troglodytes 1 (0)
NCBITaxon:9690 1 (0)
NCBITaxon:61406 1 (0)
NCBITaxon:9579 1 (0)
NCBITaxon:328808 1 (0)
Astyanax 1 (0)
Dromaius novaehollandiae 1 (0)
Balaenoptera acutorostrata 1 (0)
NCBITaxon:120794 1 (0)
Gorilla gorilla 1 (0)
NCBITaxon:255217 1 (0)
NCBITaxon:70340 1 (0)
Peromyscus maniculatus 1 (0)
Macaca fuscata 1 (0)
Delphinapterus leucas 1 (0)
NCBITaxon:57661 1 (0)
NCBITaxon:9773 1 (0)
NCBITaxon:9691 1 (0)
Symphalangus syndactylus 1 (0)
NCBITaxon:37029 1 (0)
Aepyceros melampus 1 (0)
NCBITaxon:338458 1 (0)
Numida meleagris 1 (0)
Panthera tigris tigris 1 (0)
Peromyscus polionotus 1 (0)
Anas platyrhynchos 1 (0)
NCBITaxon:345164 1 (0)
NCBITaxon:34892 1 (0)
Human immunodeficiency virus 1 1 (0)
Elephas maximus 1 (0)
Cebus apella 1 (0)
Camelus dromedarius 1 (0)
NCBITaxon:61386 1 (0)
NCBITaxon:61455 1 (0)
NCBITaxon:46844 1 (0)
Oreochromis niloticus 1 (0)
Sus scrofa domesticus 1 (0)
Panthera tigris 1 (0)
Tursiops truncatus 1 (0)
NCBITaxon:43597 1 (0)
Columba livia 1 (0)
Coturnix coturnix 1 (0)
Ursus americanus 1 (0)
Hepacivirus C 1 (-3)
NCBITaxon:8523 1 (0)
[Candida] glabrata 1 (+1)
NCBITaxon:103584 1 (0)
Bacillus subtilis subsp. subtilis str. JH642 1 (+1)
NCBITaxon:54059 1 (0)
NCBITaxon:38666 1 (0)
Cavia porcellus 1 (0)
NCBITaxon:273489 1 (0)
Takifugu rubripes 1 (0)
Canis latrans 1 (0)
NCBITaxon:61402 1 (0)
Canis lupus 1 (0)
NCBITaxon:68352 1 (0)
NCBITaxon:57662 1 (0)
Sciurus carolinensis 1 (0)
NCBITaxon:118797 1 (0)
NCBITaxon:87177 1 (0)
Bos mutus 1 (0)
Phoenicopterus ruber 1 (0)
Hylobates lar 1 (0)
Rattus norvegicus 1 (0)
Ctenopharyngodon idella 1 (0)
Mycobacterium tuberculosis H37Rv 0 (-4)
Neisseria meningitidis MC58 0 (-2)
Sindbis virus 0 (-2)
Other 0 (0)
Jaagsiekte sheep retrovirus 0 (-1)
Hepatitis B virus 0 (-2)
Micrococcus luteus 0 (-2)

Publication Model By Source

Production Query

Dev Query

source count
Total 48786 (+18)
https://data.monarchinitiative.org/ttl/wormbase.ttl 15528 (0)
https://data.monarchinitiative.org/ttl/mgi.ttl 14965 (0)
https://data.monarchinitiative.org/ttl/go.ttl 12752 (0)
https://data.monarchinitiative.org/ttl/coriell.ttl 8639 (0)
https://data.monarchinitiative.org/ttl/ncbigene.ttl 8024 (0)
https://data.monarchinitiative.org/ttl/flybase.ttl 4098 (0)
https://data.monarchinitiative.org/ttl/zfin.ttl 2921 (+18)
https://data.monarchinitiative.org/ttl/omia.ttl 2635 (0)
https://data.monarchinitiative.org/ttl/biogrid.ttl 957 (0)
https://data.monarchinitiative.org/ttl/mgi_slim.ttl 781 (0)
https://data.monarchinitiative.org/ttl/mmrrc.ttl 102 (0)
Other 0 (0)

Disease Phenotype Associations By Source

Production Query

Dev Query

species count
Total 155931 (-713)
https://data.monarchinitiative.org/ttl/hpoa.ttl 153888 (-713)
https://data.monarchinitiative.org/ttl/monarch.ttl 1768 (0)
https://data.monarchinitiative.org/ttl/omia.ttl 221 (0)
https://data.monarchinitiative.org/ttl/omim.ttl 2 (0)
Other 0 (0)

Publication Gene By Source

Production Query

Dev Query

source count
Total 5075837 (+1149)
https://data.monarchinitiative.org/ttl/ncbigene.ttl 4175822 (+2894)
https://data.monarchinitiative.org/ttl/go.ttl 1038506 (+6)
https://data.monarchinitiative.org/ttl/biogrid.ttl 338834 (+329)
https://data.monarchinitiative.org/ttl/flybase.ttl 96829 (0)
https://data.monarchinitiative.org/ttl/sgd.ttl 86732 (0)
https://data.monarchinitiative.org/ttl/zfin.ttl 70660 (+157)
https://data.monarchinitiative.org/ttl/gwascatalog.ttl 61361 (+377)
https://data.monarchinitiative.org/ttl/mgi.ttl 57869 (0)
https://data.monarchinitiative.org/ttl/clinvar.nt 48051 (-4132)
https://data.monarchinitiative.org/ttl/wormbase.ttl 37087 (0)
https://data.monarchinitiative.org/ttl/mgi_slim.ttl 31983 (0)
https://data.monarchinitiative.org/ttl/omim.ttl 28540 (+53)
https://data.monarchinitiative.org/ttl/hgnc.ttl 28025 (+387)
https://data.monarchinitiative.org/ttl/zfinslim.ttl 13191 (0)
https://data.monarchinitiative.org/ttl/mmrrc.ttl 7505 (0)
https://data.monarchinitiative.org/ttl/impc.ttl 4630 (0)
https://data.monarchinitiative.org/ttl/animalqtldb.ttl 4613 (0)
https://data.monarchinitiative.org/ttl/rgd.ttl 184 (0)
https://data.monarchinitiative.org/ttl/hpoa.ttl 4 (0)
Other 0 (0)

Gene Homology By Subject Taxa

Production Query

Dev Query

source count
Total 7881249 (+8320)
Mus musculus 1041581 (+196)
Danio rerio 921927 (+537)
Rattus norvegicus 827150 (+171)
Caenorhabditis elegans 678047 (+119)
Sus scrofa 614982 (+95)
Homo sapiens 613041 (+5775)
Drosophila melanogaster 421371 (+197)
Canis lupus familiaris 360894 (+83)
Bos taurus 350282 (+92)
Equus caballus 323831 (+81)
Xenopus (Silurana) tropicalis 283761 (+90)
Gallus gallus 277402 (+88)
Pan troglodytes 211245 (+63)
Monodelphis domestica 199203 (+108)
Macaca mulatta 186173 (+101)
Felis catus 179290 (+75)
Anolis carolinensis 175165 (+109)
Arabidopsis thaliana 113918 (+118)
Saccharomyces cerevisiae S288C 82624 (+62)
Ornithorhynchus anatinus 17384 (+4)
organism 336 (+2)
Human immunodeficiency virus 1 175 (+102)
Hepatitis C virus subtype 2a 155 (+139)
Hepacivirus C 130 (+15)
Dengue virus group 89 (+28)
Bacillus subtilis subsp. subtilis str. JH642 87 (+87)
Human alphaherpesvirus 1 83 (+32)
Human betaherpesvirus 5 63 (+63)
Enterococcus faecium 58 (+58)
Escherichia coli 58 (+2)
Staphylococcus aureus subsp. aureus 57 (+57)
Human gammaherpesvirus 8 55 (+55)
Bacillus megaterium 51 (+51)
Salmonella 43 (+43)
Influenzavirus A 43 (0)
Hepatitis C virus subtype 1a 41 (+41)
NCBITaxon:521007 39 (0)
Acinetobacter baumannii 39 (+39)
Mycoplasma pneumoniae M129 37 (+37)
Human alphaherpesvirus 3 37 (+37)
Human papillomavirus type 16 35 (+35)
NCBITaxon:70865 30 (+30)
Lactobacillus acidophilus 29 (0)
Murine leukemia virus 28 (-23)
Staphylococcus aureus 28 (+1)
Staphylococcus saprophyticus 26 (+26)
Sindbis virus 23 (-22)
[Candida] glabrata 17 (+17)
Mycobacterium tuberculosis 16 (+16)
Simian virus 40 15 (+15)
Yellow fever virus 13 (-13)
Influenza A virus (A/chicken/Guangdong/1/2001(H5N1)) 12 (+12)
Candida albicans 10 (+10)
Influenza A virus (A/Puerto Rico/8/34/Mount Sinai(H1N1)) 10 (+10)
NCBITaxon:528354 10 (+10)
HIV-1 M:C_ETH2220 0 (-23)
Mycobacterium tuberculosis H37Rv 0 (-37)
Other 0 (0)
NCBITaxon:1392869 0 (-35)
Human respiratory syncytial virus B 0 (-39)
Jaagsiekte sheep retrovirus 0 (-15)
Salmonella enterica subsp. enterica serovar Typhi 0 (-131)
Helicobacter pylori 0 (-17)
Lactobacillus johnsonii NCC 533 0 (-9)
Human herpesvirus 5 strain AD169 0 (-17)
Pseudomonas aeruginosa 0 (-67)
Listeria innocua 0 (-15)
Fusarium oxysporum species complex 0 (-15)
HIV-1 M:B_HXB2R 0 (-42)
NCBITaxon:526980 0 (-58)
Hepatitis C virus subtype 1b 0 (-41)
Micrococcus luteus 0 (-43)
Escherichia coli ATCC 8739 0 (-57)
Neisseria meningitidis 0 (-16)
Influenza A virus (A/WSN/1933(H1N1)) 0 (-19)
Human rhinovirus B3 0 (-21)
Human adenovirus 5 0 (-48)
Neisseria meningitidis MC58 0 (-16)
Hepatitis B virus 0 (-75)

Variant Disease Associations By Source

Production Query

Dev Query

source count
Total 124730 (-540)
https://data.monarchinitiative.org/ttl/clinvar.nt 89486 (-512)
https://data.monarchinitiative.org/ttl/gwascatalog.ttl 33026 (0)
https://data.monarchinitiative.org/ttl/coriell.ttl 1028 (-22)
https://data.monarchinitiative.org/ttl/omim.ttl 1010 (-6)
https://data.monarchinitiative.org/ttl/udp.ttl 110 (0)
https://data.monarchinitiative.org/ttl/hpoa.ttl 35 (0)
https://data.monarchinitiative.org/ttl/mgi.ttl 30 (0)
https://data.monarchinitiative.org/ttl/mgi_slim.ttl 3 (0)
https://data.monarchinitiative.org/ttl/orphanet.ttl 3 (0)
https://data.monarchinitiative.org/ttl/impc.ttl 1 (0)
Other 0 (0)

Gene Variant Associations By Source

Production Query

Dev Query

source count
Total 1398327 (-63436)
https://data.monarchinitiative.org/ttl/mgi.ttl 839376 (0)
https://data.monarchinitiative.org/ttl/flybase.ttl 192674 (0)
https://data.monarchinitiative.org/ttl/wormbase.ttl 116276 (0)
https://data.monarchinitiative.org/ttl/clinvar.nt 69598 (-64179)
https://data.monarchinitiative.org/ttl/gwascatalog.ttl 61601 (+381)
https://data.monarchinitiative.org/ttl/mmrrc.ttl 48904 (0)
https://data.monarchinitiative.org/ttl/zfin.ttl 41500 (+287)
https://data.monarchinitiative.org/ttl/omim.ttl 28088 (+75)
https://data.monarchinitiative.org/ttl/animalqtldb.ttl 23510 (0)
https://data.monarchinitiative.org/ttl/impc.ttl 12948 (0)
https://data.monarchinitiative.org/ttl/go.ttl 5111 (0)
Other 0 (0)

Gene Phenotype Associations By Taxa

Production Query

Dev Query

species count
Total 674996 (+85)
Mus musculus 212684 (0)
Homo sapiens 196370 (+82)
Caenorhabditis elegans 76781 (0)
Saccharomyces cerevisiae S288C 68224 (0)
Danio rerio 55998 (0)
Drosophila melanogaster 49114 (0)
organism 10484 (0)
Rattus norvegicus 494 (0)
Canis lupus familiaris 460 (0)
Drosophila hydei 452 (0)
Drosophila subobscura 373 (0)
Drosophila virilis 337 (0)
Drosophila ananassae 246 (0)
Drosophila simulans 204 (0)
Drosophila pseudoobscura pseudoobscura 203 (0)
Drosophila willistoni 186 (0)
Bos taurus 160 (0)
NCBITaxon:7257 153 (0)
Drosophila funebris 132 (0)
Felis catus 128 (0)
NCBITaxon:30019 124 (0)
NCBITaxon:40372 118 (0)
NCBITaxon:30033 82 (0)
NCBITaxon:95109 82 (0)
Drosophila immigrans 72 (0)
Human immunodeficiency virus 1 70 (+10)
NCBITaxon:7300 69 (0)
NCBITaxon:7246 63 (0)
Human alphaherpesvirus 1 61 (+54)
NCBITaxon:30042 56 (0)
Ovis aries 55 (0)
Drosophila buzzatii 55 (0)
Drosophila mauritiana 52 (0)
Drosophila paulistorum 49 (0)
Mycoplasma pneumoniae M129 44 (+44)
Drosophila miranda 43 (0)
Bacillus subtilis subsp. subtilis str. JH642 36 (+36)
Drosophila littoralis 34 (0)
NCBITaxon:7218 33 (0)
Candida albicans 33 (+33)
Human gammaherpesvirus 8 32 (+32)
Equus caballus 31 (0)
Sus scrofa 30 (0)
Hepacivirus C 27 (-13)
Drosophila ambigua 27 (0)
NCBITaxon:193351 22 (0)
Gallus gallus 19 (0)
Phoenicopterus ruber 17 (0)
Capra hircus 17 (0)
Human betaherpesvirus 5 15 (+15)
NCBITaxon:125945 15 (0)
NCBITaxon:76712 14 (0)
Drosophila persimilis 14 (0)
NCBITaxon:7282 13 (0)
NCBITaxon:7283 13 (0)
Drosophila mojavensis 12 (0)
[Candida] glabrata 11 (+11)
NCBITaxon:64960 11 (0)
Drosophila auraria 11 (0)
NCBITaxon:46794 10 (0)
Oryctolagus cuniculus 10 (0)
Mustela putorius furo 10 (0)
Drosophila sechellia 9 (0)
NCBITaxon:30043 7 (0)
NCBITaxon:169138 7 (0)
Influenza A virus (A/chicken/Guangdong/1/2001(H5N1)) 7 (+7)
Yellow fever virus 7 (-1)
NCBITaxon:161732 6 (0)
Hepatitis C virus subtype 2a 6 (+2)
NCBITaxon:42026 6 (0)
NCBITaxon:47314 6 (0)
Neovison vison 4 (0)
Macaca mulatta 4 (0)
NCBITaxon:40844 4 (0)
NCBITaxon:69217 4 (0)
NCBITaxon:46822 4 (0)
NCBITaxon:30028 4 (0)
NCBITaxon:198721 3 (0)
Meleagris gallopavo 3 (0)
Oryzias latipes 3 (0)
NCBITaxon:94111 3 (0)
Mesocricetus auratus 3 (0)
NCBITaxon:218680 3 (0)
Human alphaherpesvirus 3 3 (+3)
Sindbis virus 3 (-6)
NCBITaxon:30036 3 (0)
Drosophila pseudoobscura bogotana 3 (0)
Drosophila equinoxialis 3 (0)
NCBITaxon:7252 3 (0)
Drosophila takahashii 3 (0)
NCBITaxon:133978 2 (0)
Vulpes vulpes 2 (0)
NCBITaxon:30029 2 (0)
NCBITaxon:42062 2 (0)
NCBITaxon:141217 2 (0)
NCBITaxon:7270 2 (0)
NCBITaxon:134002 2 (0)
Human papillomavirus type 16 2 (+2)
NCBITaxon:30023 2 (0)
NCBITaxon:195057 2 (0)
NCBITaxon:133981 2 (0)
Drosophila arizonae 2 (0)
Drosophila madeirensis 2 (0)
NCBITaxon:7291 2 (0)
Drosophila erecta 2 (0)
NCBITaxon:7271 2 (0)
NCBITaxon:76946 2 (0)
Bubalus bubalis 2 (0)
Drosophila eugracilis 2 (0)
Scaptodrosophila lebanonensis 2 (0)
Numida meleagris 1 (0)
NCBITaxon:9690 1 (0)
NCBITaxon:70340 1 (0)
Drosophila lutescens 1 (0)
NCBITaxon:310057 1 (0)
Ursus americanus 1 (0)
Mammuthus primigenius 1 (0)
NCBITaxon:103846 1 (0)
Drosophila yakuba 1 (0)
Panthera tigris tigris 1 (0)
Peromyscus polionotus 1 (0)
NCBITaxon:7231 1 (0)
NCBITaxon:32536 1 (0)
NCBITaxon:521007 1 (0)
Bos grunniens 1 (0)
NCBITaxon:30056 1 (0)
NCBITaxon:43597 1 (0)
NCBITaxon:7297 1 (0)
NCBITaxon:7284 1 (0)
Dengue virus group 1 (0)
Salmonella 1 (+1)
NCBITaxon:66368 1 (0)
Influenzavirus A 1 (0)
NCBITaxon:38666 1 (0)
NCBITaxon:7279 1 (0)
NCBITaxon:61402 1 (0)
Murine leukemia virus 1 (+1)
Sciurus carolinensis 1 (0)
Vulpes lagopus 1 (0)
NCBITaxon:528354 1 (+1)
NCBITaxon:68352 1 (0)
NCBITaxon:27706 1 (0)
Hepatitis C virus subtype 1a 1 (+1)
Coturnix japonica 1 (0)
NCBITaxon:87177 1 (0)
Staphylococcus aureus 1 (+1)
NCBITaxon:57910 1 (0)
Human rhinovirus B3 0 (-6)
Salmonella enterica subsp. enterica serovar Typhi 0 (-1)
Listeria innocua 0 (-1)
NCBITaxon:1392869 0 (-1)
Other 0 (0)
Mycobacterium tuberculosis H37Rv 0 (-44)
Neisseria meningitidis MC58 0 (-50)
Jaagsiekte sheep retrovirus 0 (-10)
Human herpesvirus 5 strain AD169 0 (-6)
HIV-1 M:B_HXB2R 0 (-10)
Hepatitis C virus subtype 1b 0 (-1)
Micrococcus luteus 0 (-18)
Influenza A virus (A/WSN/1933(H1N1)) 0 (-3)
Human adenovirus 5 0 (-1)
Hepatitis B virus 0 (-79)

Genotype Phenotype Associations By Source

Production Query

Dev Query

source count
Total 560999 (+383)
https://data.monarchinitiative.org/ttl/mgi.ttl 338531 (0)
https://data.monarchinitiative.org/ttl/zfin.ttl 107498 (+383)
https://data.monarchinitiative.org/ttl/coriell.ttl 75564 (0)
https://data.monarchinitiative.org/ttl/hpoa.ttl 75561 (0)
https://data.monarchinitiative.org/ttl/impc.ttl 28433 (0)
https://data.monarchinitiative.org/ttl/mpd.ttl 10963 (0)
https://data.monarchinitiative.org/ttl/mgi_slim.ttl 10 (0)
Other 0 (0)

Gene Interactions By Subject Taxa

Production Query

Dev Query

source count
Total 3764850 (+1217)
Homo sapiens 1414650 (+1132)
Mus musculus 729810 (+7)
Rattus norvegicus 484928 (0)
Drosophila melanogaster 470895 (0)
Caenorhabditis elegans 365031 (0)
Danio rerio 292821 (0)
Hepacivirus C 750 (+426)
Mycoplasma pneumoniae M129 745 (+745)
Dengue virus group 686 (+604)
Human immunodeficiency virus 1 623 (+159)
Escherichia coli 537 (+307)
Human gammaherpesvirus 8 526 (+526)
Simian virus 40 516 (+516)
Bacillus megaterium 463 (+463)
Yellow fever virus 368 (-395)
Sindbis virus 253 (-176)
Influenza A virus (A/Puerto Rico/8/34/Mount Sinai(H1N1)) 148 (+148)
Hepatitis C virus subtype 2a 137 (+16)
NCBITaxon:521007 119 (0)
Acinetobacter baumannii 103 (+103)
Enterococcus faecium 91 (+91)
[Candida] glabrata 86 (+86)
Murine leukemia virus 76 (+62)
NCBITaxon:528354 64 (+64)
Human alphaherpesvirus 3 51 (+51)
Hepatitis C virus subtype 1a 48 (+48)
Human alphaherpesvirus 1 44 (-260)
Candida albicans 36 (+36)
Mycobacterium tuberculosis 35 (+35)
Staphylococcus aureus subsp. aureus 29 (+29)
Other 27 (0)
Influenzavirus A 27 (0)
NCBITaxon:70865 27 (+27)
Staphylococcus saprophyticus 26 (+26)
Influenza A virus (A/chicken/Guangdong/1/2001(H5N1)) 24 (+24)
Salmonella 12 (+12)
Human betaherpesvirus 5 11 (+11)
Human papillomavirus type 16 10 (+10)
Lactobacillus acidophilus 7 (0)
Bacillus subtilis subsp. subtilis str. JH642 6 (+6)
Staphylococcus aureus 4 (-84)
HIV-1 M:C_ETH2220 0 (-764)
Listeria innocua 0 (-28)
Neisseria meningitidis 0 (-35)
NCBITaxon:1392869 0 (-4)
Human respiratory syncytial virus B 0 (-92)
Neisseria meningitidis MC58 0 (-147)
Jaagsiekte sheep retrovirus 0 (-14)
Salmonella enterica subsp. enterica serovar Typhi 0 (-83)
Helicobacter pylori 0 (-201)
Lactobacillus johnsonii NCC 533 0 (-100)
Escherichia coli ATCC 8739 0 (-29)
Human herpesvirus 5 strain AD169 0 (-10)
Pseudomonas aeruginosa 0 (-148)
Mycobacterium tuberculosis H37Rv 0 (-744)
Fusarium oxysporum species complex 0 (-11)
HIV-1 M:B_HXB2R 0 (-257)
NCBITaxon:526980 0 (-91)
Hepatitis C virus subtype 1b 0 (-48)
Micrococcus luteus 0 (-206)
Influenza A virus (A/WSN/1933(H1N1)) 0 (-189)
Human rhinovirus B3 0 (-321)
Human adenovirus 5 0 (-59)
Hepatitis B virus 0 (-57)

Gene Disease Causal Associations By Source

Production Query

Dev Query

species count
Total 10413 (-119)
https://data.monarchinitiative.org/ttl/omim.ttl 6292 (+961)
https://data.monarchinitiative.org/ttl/orphanet.ttl 6099 (+1)
https://data.monarchinitiative.org/ttl/clinvar.nt 5861 (-56)
https://data.monarchinitiative.org/ttl/kegg.ttl 5301 (+5301)
https://data.monarchinitiative.org/ttl/omia.ttl 725 (0)
https://data.monarchinitiative.org/ttl/mgi.ttl 11 (0)
https://data.monarchinitiative.org/ttl/gwascatalog.ttl 8 (0)
https://data.monarchinitiative.org/ttl/mgi_slim.ttl 7 (0)
https://data.monarchinitiative.org/ttl/mmrrc.ttl 3 (0)
https://data.monarchinitiative.org/ttl/impc.ttl 1 (0)
Other 0 (0)

Case Genotype By Source

Production Query

Dev Query

source count
Total 3840 (0)
https://data.monarchinitiative.org/ttl/coriell.ttl 3807 (0)
https://data.monarchinitiative.org/ttl/udp.ttl 33 (0)
Other 0 (0)

Variant Genotype Associations By Taxa

Production Query

Dev Query

species count
Total 828744 (+2152)
Mus musculus 652446 (0)
Danio rerio 163365 (+2152)
organism 7094 (0)
Homo sapiens 4533 (0)
sequence_alteration 1235 (0)
NCBITaxon:10102 20 (0)
Mus musculus molossinus 15 (0)
Mus musculus bactrianus 7 (0)
Mus spretus 6 (0)
Mus musculus musculus 5 (0)
Mus musculus castaneus 4 (0)
Mus 4 (0)
Rattus norvegicus 4 (0)
Macaca mulatta 2 (0)
Bos taurus 1 (0)
Saguinus labiatus 1 (0)
Plecturocebus moloch 1 (0)
Cricetulus griseus 1 (0)
Other 0 (0)

Case Phenotype By Source

Production Query

Dev Query

source count
Total 1085 (0)
https://data.monarchinitiative.org/ttl/udp.ttl 1076 (0)
https://data.monarchinitiative.org/ttl/coriell.ttl 9 (0)
Other 0 (0)

Publication Phenotype By Source

Production Query

Dev Query

source count
Total 5075837 (+1149)
https://data.monarchinitiative.org/ttl/ncbigene.ttl 4175822 (+2894)
https://data.monarchinitiative.org/ttl/go.ttl 1038506 (+6)
https://data.monarchinitiative.org/ttl/biogrid.ttl 338834 (+329)
https://data.monarchinitiative.org/ttl/flybase.ttl 96829 (0)
https://data.monarchinitiative.org/ttl/sgd.ttl 86732 (0)
https://data.monarchinitiative.org/ttl/zfin.ttl 70660 (+157)
https://data.monarchinitiative.org/ttl/gwascatalog.ttl 61361 (+377)
https://data.monarchinitiative.org/ttl/mgi.ttl 57869 (0)
https://data.monarchinitiative.org/ttl/clinvar.nt 48051 (-4132)
https://data.monarchinitiative.org/ttl/wormbase.ttl 37087 (0)
https://data.monarchinitiative.org/ttl/mgi_slim.ttl 31983 (0)
https://data.monarchinitiative.org/ttl/omim.ttl 28540 (+53)
https://data.monarchinitiative.org/ttl/hgnc.ttl 28025 (+387)
https://data.monarchinitiative.org/ttl/zfinslim.ttl 13191 (0)
https://data.monarchinitiative.org/ttl/mmrrc.ttl 7505 (0)
https://data.monarchinitiative.org/ttl/impc.ttl 4630 (0)
https://data.monarchinitiative.org/ttl/animalqtldb.ttl 4613 (0)
https://data.monarchinitiative.org/ttl/rgd.ttl 184 (0)
https://data.monarchinitiative.org/ttl/hpoa.ttl 4 (0)
Other 0 (0)

Gene Interactions By Source

Production Query

Dev Query

source count
Total 3764850 (+1217)
https://data.monarchinitiative.org/ttl/string.ttl 2982400 (+34)
https://data.monarchinitiative.org/ttl/biogrid.ttl 931518 (+1185)
Other 0 (0)

Case Model By Source

Production Query

Dev Query

source count
https://data.monarchinitiative.org/ttl/coriell.ttl 29866 (0)
Total 29866 (0)
Other 0 (0)

Gene Pathway By Taxa

Production Query

Dev Query

source count
Total 204028 (+2)
Homo sapiens 39525 (-86)
Mus musculus 26978 (0)
Rattus norvegicus 23563 (0)
Canis lupus familiaris 19579 (0)
Sus scrofa 19468 (0)
Danio rerio 19119 (0)
Bos taurus 18816 (0)
Gallus gallus 13867 (0)
Drosophila melanogaster 11514 (0)
Caenorhabditis elegans 11345 (0)
Bacillus megaterium 38 (+38)
Human gammaherpesvirus 8 29 (+29)
Dengue virus group 29 (+28)
Human immunodeficiency virus 1 26 (+11)
Mycoplasma pneumoniae M129 23 (+23)
Escherichia coli 22 (+20)
Hepacivirus C 21 (+19)
Simian virus 40 11 (+11)
Influenza A virus (A/Puerto Rico/8/34/Mount Sinai(H1N1)) 7 (+7)
NCBITaxon:528354 6 (+6)
NCBITaxon:521007 4 (0)
Influenzavirus A 4 (0)
Salmonella 3 (+3)
Bacillus subtilis subsp. subtilis str. JH642 3 (+3)
Human alphaherpesvirus 1 3 (+1)
Hepatitis C virus subtype 2a 3 (+2)
Yellow fever virus 2 (-1)
[Candida] glabrata 2 (+2)
Staphylococcus aureus subsp. aureus 2 (+2)
Murine leukemia virus 2 (+2)
NCBITaxon:70865 2 (+2)
Enterococcus faecium 2 (+2)
Acinetobacter baumannii 2 (+2)
Influenza A virus (A/chicken/Guangdong/1/2001(H5N1)) 1 (+1)
Sindbis virus 1 (-3)
Candida albicans 1 (+1)
Human betaherpesvirus 5 1 (+1)
Staphylococcus saprophyticus 1 (+1)
Lactobacillus acidophilus 1 (0)
Human alphaherpesvirus 3 1 (+1)
Staphylococcus aureus 1 (-1)
HIV-1 M:C_ETH2220 0 (-29)
Mycobacterium tuberculosis H37Rv 0 (-23)
Other 0 (0)
NCBITaxon:1392869 0 (-1)
Human respiratory syncytial virus B 0 (-1)
Jaagsiekte sheep retrovirus 0 (-3)
Salmonella enterica subsp. enterica serovar Typhi 0 (-1)
HIV-1 M:B_HXB2R 0 (-15)
Lactobacillus johnsonii NCC 533 0 (-17)
Escherichia coli ATCC 8739 0 (-2)
Human herpesvirus 5 strain AD169 0 (-2)
Pseudomonas aeruginosa 0 (-9)
Helicobacter pylori 0 (-3)
NCBITaxon:526980 0 (-2)
Micrococcus luteus 0 (-3)
Neisseria meningitidis MC58 0 (-6)
Human rhinovirus B3 0 (-5)
Hepatitis B virus 0 (-3)

Variant Phenotype Associations By Taxa

Production Query

Dev Query

species count
Total 1455022 (-2273593)
Mus musculus 413161 (0)
organism 404410 (-42239)
Caenorhabditis elegans 192960 (0)
Drosophila melanogaster 111499 (0)
Homo sapiens 108643 (-2179955)
Bos taurus 99658 (-25547)
Danio rerio 93846 (+348)
Sus scrofa 15384 (-19175)
Gallus gallus 6504 (-7025)
Ovis aries 1519 (0)
sequence_alteration 1305 (0)
Equus caballus 1009 (0)
Drosophila hydei 644 (0)
Drosophila subobscura 596 (0)
Drosophila virilis 592 (0)
Drosophila ananassae 398 (0)
Drosophila pseudoobscura pseudoobscura 321 (0)
Drosophila simulans 279 (0)
Drosophila willistoni 251 (0)
Drosophila funebris 228 (0)
NCBITaxon:40372 206 (0)
NCBITaxon:7257 156 (0)
NCBITaxon:30019 142 (0)
Drosophila immigrans 108 (0)
NCBITaxon:95109 100 (0)
NCBITaxon:30033 95 (0)
Drosophila mauritiana 76 (0)
NCBITaxon:7246 76 (0)
NCBITaxon:7300 71 (0)
NCBITaxon:30042 68 (0)
Drosophila buzzatii 67 (0)
Drosophila miranda 65 (0)
Drosophila paulistorum 60 (0)
NCBITaxon:76712 52 (0)
Drosophila littoralis 45 (0)
Drosophila persimilis 39 (0)
NCBITaxon:7218 35 (0)
Drosophila mojavensis 34 (0)
Drosophila ambigua 28 (0)
Saccharomyces cerevisiae S288C 23 (0)
NCBITaxon:193351 22 (0)
Drosophila auraria 18 (0)
NCBITaxon:125945 18 (0)
NCBITaxon:7282 14 (0)
NCBITaxon:7283 13 (0)
NCBITaxon:64960 11 (0)
NCBITaxon:46794 10 (0)
NCBITaxon:42026 10 (0)
NCBITaxon:161732 9 (0)
Drosophila sechellia 9 (0)
NCBITaxon:30036 9 (0)
Drosophila takahashii 8 (0)
NCBITaxon:30043 7 (0)
NCBITaxon:47314 7 (0)
NCBITaxon:169138 7 (0)
NCBITaxon:94111 6 (0)
NCBITaxon:7291 5 (0)
NCBITaxon:30023 4 (0)
NCBITaxon:30028 4 (0)
NCBITaxon:40844 4 (0)
NCBITaxon:46822 4 (0)
NCBITaxon:69217 4 (0)
Drosophila eugracilis 4 (0)
NCBITaxon:198721 3 (0)
NCBITaxon:103846 3 (0)
NCBITaxon:218680 3 (0)
Drosophila pseudoobscura bogotana 3 (0)
NCBITaxon:7252 3 (0)
Drosophila equinoxialis 3 (0)
NCBITaxon:133978 2 (0)
NCBITaxon:30029 2 (0)
NCBITaxon:42062 2 (0)
NCBITaxon:141217 2 (0)
NCBITaxon:7270 2 (0)
NCBITaxon:134002 2 (0)
NCBITaxon:195057 2 (0)
Drosophila yakuba 2 (0)
NCBITaxon:133981 2 (0)
Drosophila arizonae 2 (0)
NCBITaxon:30056 2 (0)
Drosophila erecta 2 (0)
NCBITaxon:7297 2 (0)
NCBITaxon:7271 2 (0)
NCBITaxon:76946 2 (0)
NCBITaxon:7279 2 (0)
Drosophila madeirensis 2 (0)
Scaptodrosophila lebanonensis 2 (0)
NCBITaxon:57910 2 (0)
Other 1 (0)
Drosophila lutescens 1 (0)
NCBITaxon:310057 1 (0)
NCBITaxon:7231 1 (0)
NCBITaxon:7284 1 (0)
NCBITaxon:66368 1 (0)

Relations

Production Query

Dev Query

relation count
Total 34395324 (-2668561)
is_about 8570855 (-272615)
interacts with 3673681 (+1177)
in paralogy relationship with 2921000 (-6459)
Source 2675014 (-102763)
has phenotype 2580885 (-2274251)
in 1 to 1 orthology relationship with 2552749 (+404)
Other 2538209 (+3212)
in orthology relationship with 2108282 (+4374)
expressed in 1862910 (+14370)
involved_in 1233939 (+16591)
is_allele_of 853240 (+427)
is part of 470272 (0)
enables 416744 (0)
has_genotype 404692 (+4)
has_affected_feature 347132 (-64049)
in xenology relationship with 299218 (+10001)
contributes to condition 198733 (+2303)
is marker for 124889 (+480)
mentions 105124 (+7)
targets_gene 66774 (+93)
pathogenic_for_condition 66472 (-429)
is_expression_variant_of 64235 (+21)
colocalizes with 60485 (+32)
is_reference_allele_of 58315 (0)
is model of 37735 (-930)
genetically interacts with 30684 (+8)
derives_from 29866 (0)
likely_pathogenic_for_condition 23363 (-139)
causes condition 10571 (-122)
sequence_derives_from 8629 (+72)
is causal susceptibility factor for 459 (0)
contributes to 85 (-375)
disease has basis in feature 54 (0)
is causal germline mutation partially giving rise to 27 (-5)
is_variant_allele_of 2 (0)

Publication Genotype By Source

Production Query

Dev Query

source count
Total 128094 (+164)
https://data.monarchinitiative.org/ttl/mgi.ttl 79480 (0)
https://data.monarchinitiative.org/ttl/zfin.ttl 29052 (+164)
https://data.monarchinitiative.org/ttl/coriell.ttl 10395 (0)
https://data.monarchinitiative.org/ttl/go.ttl 9167 (0)
Other 0 (0)

Gene Function By Taxa

Production Query

Dev Query

source count
Total 1893761 (+2)
Mus musculus 341851 (0)
Homo sapiens 314385 (-323)
Rattus norvegicus 294395 (0)
Danio rerio 171877 (0)
Sus scrofa 137574 (0)
Gallus gallus 123144 (0)
Bos taurus 121784 (0)
Canis lupus familiaris 116201 (0)
Caenorhabditis elegans 101391 (0)
Drosophila melanogaster 100344 (0)
Saccharomyces cerevisiae S288C 68899 (0)
Human immunodeficiency virus 1 297 (+121)
Human gammaherpesvirus 8 184 (+184)
Hepacivirus C 175 (+60)
Dengue virus group 133 (+78)
Simian virus 40 102 (+102)
Escherichia coli 80 (+51)
Mycoplasma pneumoniae M129 79 (+79)
NCBITaxon:528354 76 (+76)
Hepatitis C virus subtype 2a 62 (+39)
Murine leukemia virus 61 (+45)
Bacillus megaterium 57 (+57)
NCBITaxon:521007 51 (0)
[Candida] glabrata 50 (+50)
Candida albicans 47 (+47)
Influenza A virus (A/Puerto Rico/8/34/Mount Sinai(H1N1)) 46 (+46)
Yellow fever virus 41 (-10)
Human alphaherpesvirus 1 38 (-19)
Sindbis virus 31 (-37)
Influenzavirus A 25 (0)
Bacillus subtilis subsp. subtilis str. JH642 24 (+24)
Influenza A virus (A/chicken/Guangdong/1/2001(H5N1)) 22 (+22)
Lactobacillus acidophilus 22 (0)
Staphylococcus aureus subsp. aureus 21 (+21)
Human betaherpesvirus 5 21 (+21)
Enterococcus faecium 20 (+20)
Staphylococcus aureus 20 (-6)
Acinetobacter baumannii 20 (+20)
Salmonella 19 (+19)
Staphylococcus saprophyticus 18 (+18)
Hepatitis C virus subtype 1a 18 (+18)
Human alphaherpesvirus 3 17 (+17)
Mycobacterium tuberculosis 16 (+16)
NCBITaxon:70865 13 (+13)
Human papillomavirus type 16 10 (+10)
HIV-1 M:C_ETH2220 0 (-109)
Listeria innocua 0 (-6)
Neisseria meningitidis 0 (-16)
Other 0 (0)
NCBITaxon:1392869 0 (-8)
Human respiratory syncytial virus B 0 (-13)
Jaagsiekte sheep retrovirus 0 (-40)
Salmonella enterica subsp. enterica serovar Typhi 0 (-42)
HIV-1 M:B_HXB2R 0 (-72)
Lactobacillus johnsonii NCC 533 0 (-71)
Escherichia coli ATCC 8739 0 (-21)
Human herpesvirus 5 strain AD169 0 (-21)
Pseudomonas aeruginosa 0 (-44)
Mycobacterium tuberculosis H37Rv 0 (-79)
Fusarium oxysporum species complex 0 (-8)
Helicobacter pylori 0 (-18)
NCBITaxon:526980 0 (-20)
Hepatitis C virus subtype 1b 0 (-18)
Micrococcus luteus 0 (-21)
Influenza A virus (A/WSN/1933(H1N1)) 0 (-23)
Human rhinovirus B3 0 (-78)
Human adenovirus 5 0 (-11)
Neisseria meningitidis MC58 0 (-42)
Hepatitis B virus 0 (-96)

Variant Disease Associations By Taxa

Production Query

Dev Query

species count
Total 124730 (-540)
Homo sapiens 123975 (-525)
organism 737 (-15)
Mus musculus 18 (0)
Other 0 (0)

Gene Variant Associations By Taxa

Production Query

Dev Query

species count
Total 1398327 (-63436)
Mus musculus 861738 (0)
Drosophila melanogaster 181505 (0)
Homo sapiens 161479 (-63766)
Caenorhabditis elegans 116437 (0)
Danio rerio 39383 (+284)
Bos taurus 16962 (0)
organism 9749 (+3)
Sus scrofa 3353 (0)
Gallus gallus 1687 (0)
Drosophila ananassae 601 (0)
Drosophila virilis 571 (0)
Drosophila subobscura 536 (0)
Drosophila hydei 523 (0)
Drosophila simulans 433 (0)
Drosophila pseudoobscura pseudoobscura 330 (0)
Equus caballus 235 (0)
Drosophila willistoni 206 (0)
Rattus norvegicus 180 (0)
Drosophila funebris 177 (0)
NCBITaxon:40372 149 (0)
NCBITaxon:30033 123 (0)
Drosophila mauritiana 122 (0)
NCBITaxon:7257 122 (0)
Drosophila buzzatii 121 (0)
NCBITaxon:95109 95 (0)
Drosophila immigrans 91 (0)
NCBITaxon:30019 88 (0)
Drosophila miranda 88 (0)
Bacillus subtilis subsp. subtilis str. JH642 75 (+75)
NCBITaxon:7246 58 (0)
NCBITaxon:7300 53 (0)
NCBITaxon:76712 52 (0)
NCBITaxon:7231 50 (0)
Drosophila mojavensis 44 (0)
Drosophila affinidisjuncta 42 (0)
Human gammaherpesvirus 8 41 (+41)
Drosophila teissieri 41 (0)
Drosophila persimilis 39 (0)
NCBITaxon:30042 39 (0)
Drosophila littoralis 35 (0)
Drosophila paulistorum 32 (0)
Human immunodeficiency virus 1 32 (+8)
Drosophila takahashii 30 (0)
Drosophila lutescens 27 (0)
Mycoplasma pneumoniae M129 27 (+27)
Drosophila arizonae 26 (0)
NCBITaxon:7218 26 (0)
NCBITaxon:60717 24 (0)
NCBITaxon:111875 24 (0)
[Candida] glabrata 23 (+23)
Drosophila ambigua 19 (0)
NCBITaxon:42026 18 (0)
NCBITaxon:7283 18 (0)
NCBITaxon:193351 17 (0)
NCBITaxon:7282 14 (0)
NCBITaxon:125945 14 (0)
Drosophila auraria 14 (0)
Drosophila sechellia 13 (0)
Hepacivirus C 13 (-1)
NCBITaxon:64960 12 (0)
Drosophila hawaiiensis 12 (0)
Human betaherpesvirus 5 10 (+10)
Human alphaherpesvirus 1 10 (-10)
Drosophila yakuba 9 (0)
NCBITaxon:30036 9 (0)
NCBITaxon:161732 8 (0)
NCBITaxon:47314 8 (0)
Yellow fever virus 8 (-1)
NCBITaxon:195057 8 (0)
Ovis aries 7 (0)
Hepatitis C virus subtype 2a 7 (+1)
Scaptodrosophila lebanonensis 7 (0)
NCBITaxon:94111 6 (0)
NCBITaxon:46794 6 (0)
NCBITaxon:30043 6 (0)
NCBITaxon:7291 6 (0)
Drosophila grimshawi 6 (0)
Influenza A virus (A/chicken/Guangdong/1/2001(H5N1)) 6 (+6)
NCBITaxon:103846 5 (0)
NCBITaxon:76946 5 (0)
NCBITaxon:77771 5 (0)
NCBITaxon:30023 4 (0)
NCBITaxon:169138 4 (0)
Drosophila eugracilis 4 (0)
Canis lupus familiaris 4 (0)
Human papillomavirus type 16 3 (+3)
NCBITaxon:218680 3 (0)
Human alphaherpesvirus 3 3 (+3)
Hepatitis C virus subtype 1a 3 (+3)
NCBITaxon:7249 3 (0)
Bacillus megaterium 3 (+3)
NCBITaxon:69217 3 (0)
Pan troglodytes 2 (0)
NCBITaxon:42062 2 (0)
Escherichia coli 2 (+2)
Xenopus (Silurana) tropicalis 2 (0)
Drosophila madeirensis 2 (0)
NCBITaxon:30056 2 (0)
Drosophila erecta 2 (0)
Drosophila pseudoobscura bogotana 2 (0)
NCBITaxon:7297 2 (0)
NCBITaxon:30028 2 (0)
Salmonella 2 (+2)
Drosophila equinoxialis 2 (0)
Candida albicans 2 (+2)
NCBITaxon:7279 2 (0)
NCBITaxon:40844 2 (0)
NCBITaxon:70865 2 (+2)
NCBITaxon:57910 2 (0)
NCBITaxon:46822 2 (0)
Arabidopsis thaliana 1 (0)
NCBITaxon:198721 1 (0)
NCBITaxon:133978 1 (0)
NCBITaxon:30029 1 (0)
NCBITaxon:141217 1 (0)
NCBITaxon:310057 1 (0)
Drosophila borealis 1 (0)
NCBITaxon:134002 1 (0)
NCBITaxon:133981 1 (0)
NCBITaxon:528354 1 (+1)
Sindbis virus 1 (-6)
NCBITaxon:7284 1 (0)
Dengue virus group 1 (-1)
NCBITaxon:7271 1 (0)
NCBITaxon:521007 1 (0)
Influenzavirus A 1 (0)
NCBITaxon:7252 1 (0)
NCBITaxon:7248 1 (0)
Drosophila orena 1 (0)
NCBITaxon:66368 1 (0)
Saccharomyces cerevisiae S288C 1 (0)
Murine leukemia virus 1 (+1)
NCBITaxon:7270 1 (0)
Staphylococcus aureus 1 (+1)
Other 0 (0)
Salmonella enterica subsp. enterica serovar Typhi 0 (-2)
Pseudomonas aeruginosa 0 (-1)
Listeria innocua 0 (-1)
NCBITaxon:1392869 0 (-1)
Mycobacterium tuberculosis H37Rv 0 (-27)
Jaagsiekte sheep retrovirus 0 (-11)
Human herpesvirus 5 strain AD169 0 (-6)
HIV-1 M:B_HXB2R 0 (-9)
Hepatitis C virus subtype 1b 0 (-3)
Micrococcus luteus 0 (-26)
Influenza A virus (A/WSN/1933(H1N1)) 0 (-4)
Human rhinovirus B3 0 (-9)
Human adenovirus 5 0 (-3)
Neisseria meningitidis MC58 0 (-30)
Hepatitis B virus 0 (-19)

Disease Phenotype Associations By Taxa

Production Query

Dev Query

species count
Total 155931 (-713)
Other 145533 (-665)
Homo sapiens 10398 (-48)

Model Disease Associations By Source

Production Query

Dev Query

source count
Total 26436 (-514)
https://data.monarchinitiative.org/ttl/coriell.ttl 12024 (-516)
https://data.monarchinitiative.org/ttl/mgi.ttl 7975 (0)
https://data.monarchinitiative.org/ttl/wormbase.ttl 3328 (0)
https://data.monarchinitiative.org/ttl/flybase.ttl 1207 (0)
https://data.monarchinitiative.org/ttl/zfin.ttl 969 (+2)
https://data.monarchinitiative.org/ttl/omia.ttl 933 (0)
Other 0 (0)

Case Variant By Source

Production Query

Dev Query

source count
Total 4408 (0)
https://data.monarchinitiative.org/ttl/coriell.ttl 4296 (0)
https://data.monarchinitiative.org/ttl/udp.ttl 112 (0)
Other 0 (0)

Variant Genotype Associations By Source

Production Query

Dev Query

source count
Total 828744 (+2152)
https://data.monarchinitiative.org/ttl/mmrrc.ttl 369418 (0)
https://data.monarchinitiative.org/ttl/mgi.ttl 277370 (0)
https://data.monarchinitiative.org/ttl/zfin.ttl 163365 (+2152)
https://data.monarchinitiative.org/ttl/impc.ttl 72181 (0)
https://data.monarchinitiative.org/ttl/coriell.ttl 7276 (0)
https://data.monarchinitiative.org/ttl/udp.ttl 112 (0)
Other 0 (0)

Publication Variant By Source

Production Query

Dev Query

source count
Total 5414823 (+533)
https://data.monarchinitiative.org/ttl/ncbigene.ttl 4299396 (0)
https://data.monarchinitiative.org/ttl/animalqtldb.ttl 250257 (0)
https://data.monarchinitiative.org/ttl/clinvar.nt 159479 (0)
https://data.monarchinitiative.org/ttl/mgi.ttl 155924 (0)
https://data.monarchinitiative.org/ttl/flybase.ttl 151798 (0)
https://data.monarchinitiative.org/ttl/gwascatalog.ttl 115064 (0)
https://data.monarchinitiative.org/ttl/wormbase.ttl 107268 (0)
https://data.monarchinitiative.org/ttl/zfin.ttl 69693 (+444)
https://data.monarchinitiative.org/ttl/omim.ttl 43609 (+91)
https://data.monarchinitiative.org/ttl/coriell.ttl 38373 (0)
https://data.monarchinitiative.org/ttl/hgnc.ttl 32415 (0)
https://data.monarchinitiative.org/ttl/go.ttl 29183 (+2)
https://data.monarchinitiative.org/ttl/mgi_slim.ttl 7609 (0)
https://data.monarchinitiative.org/ttl/kegg.ttl 6195 (+1)
https://data.monarchinitiative.org/ttl/omia.ttl 5191 (0)
https://data.monarchinitiative.org/ttl/impc.ttl 4580 (0)
https://data.monarchinitiative.org/ttl/mmrrc.ttl 1606 (0)
https://data.monarchinitiative.org/ttl/ctd.ttl 1147 (0)
https://data.monarchinitiative.org/ttl/biogrid.ttl 555 (-329)
https://data.monarchinitiative.org/ttl/hpoa.ttl 120 (0)
https://data.monarchinitiative.org/ttl/sgd.ttl 29 (0)
Other 0 (0)

Case Gene By Source

Production Query

Dev Query

source count
Total 1292 (0)
https://data.monarchinitiative.org/ttl/coriell.ttl 1290 (0)
https://data.monarchinitiative.org/ttl/omim.ttl 1267 (0)
https://data.monarchinitiative.org/ttl/gwascatalog.ttl 127 (0)
https://data.monarchinitiative.org/ttl/udp.ttl 2 (0)
Other 0 (0)

Case Disease By Source

Production Query

Dev Query

source count
Total 11337 (-416)
https://data.monarchinitiative.org/ttl/coriell.ttl 11299 (-416)
https://data.monarchinitiative.org/ttl/udp.ttl 38 (0)
Other 0 (0)

Model Disease Associations By Taxa

Production Query

Dev Query

species count
Total 26436 (-514)
Homo sapiens 12021 (-516)
Mus musculus 7856 (0)
Caenorhabditis elegans 3328 (0)
Drosophila melanogaster 1207 (0)
Danio rerio 967 (+2)
Carnivora 684 (0)
Ruminantia 144 (0)
organism 98 (0)
Felidae 55 (0)
Equidae 34 (0)
sequence_alteration 18 (0)
Sus 5 (0)
Suidae 5 (0)
Gallus gallus 3 (0)
Bos taurus 3 (0)
NCBITaxon:477815 2 (0)
Bovidae 2 (0)
Other 2 (0)
Mus musculus castaneus 1 (0)
Viridiplantae 1 (0)

Gene Disease Non-Causal Associations By Source

Production Query

Dev Query

species count
Total 20580 (+2024)
https://data.monarchinitiative.org/ttl/gwascatalog.ttl 16785 (+116)
https://data.monarchinitiative.org/ttl/omim.ttl 2675 (+1894)
https://data.monarchinitiative.org/ttl/orphanet.ttl 1213 (-1)
https://data.monarchinitiative.org/ttl/kegg.ttl 542 (+542)
https://data.monarchinitiative.org/ttl/clinvar.nt 402 (-9)
https://data.monarchinitiative.org/ttl/coriell.ttl 37 (-5)
https://data.monarchinitiative.org/ttl/udp.ttl 2 (0)
Other 0 (0)

Pathway Phenotype By Source

Production Query

Dev Query

source count
Total 33007 (0)
https://data.monarchinitiative.org/ttl/reactome.ttl 33007 (0)
https://data.monarchinitiative.org/ttl/coriell.ttl 26449 (0)
https://data.monarchinitiative.org/ttl/hpoa.ttl 26449 (0)
https://data.monarchinitiative.org/ttl/omim.ttl 26409 (0)
https://data.monarchinitiative.org/ttl/animalqtldb.ttl 6558 (0)
https://data.monarchinitiative.org/ttl/gwascatalog.ttl 2236 (0)
https://data.monarchinitiative.org/ttl/orphanet.ttl 204 (0)
Other 0 (0)

SciGraph Queries

Sequence Features

Production Query

Dev Query

field count
features 7194137 (+6766)

Reagent Targeted Gene

Production Query

Dev Query

field count
rtg 106243 (+21)

Disease Phenotype Mix-ups

Production Query

Dev Query

field count
disease 131 (0)

Genotypes

Production Query

Dev Query

field count
genotypes 336563 (+662)

Genes

Production Query

Dev Query

field count
genes 1836488 (+3648)

Gene Disease Mix-ups

Production Query

Dev Query

field count
gene 114 (-21360)

Variant Loci

Production Query

Dev Query

field count
variants 858122 (+6401)

Genes in more than one taxa

Production Query

Dev Query

field count
request timeout 0

Gene Variant Mix-ups

Production Query

Dev Query

field count
variant 5179 (0)

Number of edges connected to owl:Nothing

Production Query

Dev Query

field count
nothing 0 (0)

nodes with subClassOf cycles (depth 2)

Production Query

Dev Query

field count
node_count 2 (0)

nodes with subClassOf cycles (depth 1)

Production Query

Dev Query

field count
node_count 127 (0)