Solr Queries

Publication Disease By Source

Production Query

Dev Query

source count
Total 669745 (+433197)
https://data.monarchinitiative.org/ttl/ncbigene.ttl 363963 (+363841)
https://data.monarchinitiative.org/ttl/ctd.ttl 90755 (-7747)
https://data.monarchinitiative.org/ttl/zfin.ttl 86558 (+17252)
https://data.monarchinitiative.org/ttl/go.ttl 68709 (+67477)
https://data.monarchinitiative.org/ttl/biogrid.ttl 55843 (+55843)
https://data.monarchinitiative.org/ttl/clinvar.nt 54405 (+54405)
https://data.monarchinitiative.org/ttl/wormbase.ttl 24884 (+24506)
https://data.monarchinitiative.org/ttl/mgi.ttl 14171 (+12047)
https://data.monarchinitiative.org/ttl/omia.ttl 13765 (0)
https://data.monarchinitiative.org/ttl/hgnc.ttl 4367 (+4366)
https://data.monarchinitiative.org/ttl/coriell.ttl 4235 (+418)
https://data.monarchinitiative.org/ttl/flybase.ttl 3857 (+1571)
https://data.monarchinitiative.org/ttl/gwascatalog.ttl 2316 (+184)
https://data.monarchinitiative.org/ttl/hpoa.ttl 1481 (+291)
https://data.monarchinitiative.org/ttl/mgi_slim.ttl 751 (+24)
https://data.monarchinitiative.org/ttl/monarch.ttl 184 (0)
https://data.monarchinitiative.org/ttl/mmrrc.ttl 102 (+2)
https://data.monarchinitiative.org/ttl/clinvar.ttl 0 (-44539)
Other 0 (0)

Variant Genotype Associations By Taxa

Production Query

Dev Query

species count
Total 826592 (-858977)
Mus musculus 652446 (+6495)
Danio rerio 161213 (+7851)
organism 7094 (-34)
Homo sapiens 4533 (+8)
sequence_alteration 1235 (+1235)
NCBITaxon:10102 20 (0)
Mus musculus molossinus 15 (0)
Mus musculus bactrianus 7 (0)
Mus spretus 6 (0)
Mus musculus musculus 5 (-6)
Rattus norvegicus 4 (0)
Mus 4 (0)
Mus musculus castaneus 4 (0)
Macaca mulatta 2 (0)
Bos taurus 1 (0)
Plecturocebus moloch 1 (0)
Cricetulus griseus 1 (0)
Saguinus labiatus 1 (0)
Drosophila melanogaster 0 (-873495)
Mus musculus domesticus 0 (-1031)
Other 0 (0)

Model Disease Associations By Source

Production Query

Dev Query

source count
Total 26950 (+482)
https://data.monarchinitiative.org/ttl/coriell.ttl 12540 (+557)
https://data.monarchinitiative.org/ttl/mgi.ttl 7975 (+171)
https://data.monarchinitiative.org/ttl/wormbase.ttl 3328 (+291)
https://data.monarchinitiative.org/ttl/flybase.ttl 1207 (-594)
https://data.monarchinitiative.org/ttl/zfin.ttl 967 (+57)
https://data.monarchinitiative.org/ttl/omia.ttl 933 (0)
Other 0 (0)

Gene Phenotype Associations By Taxa

Production Query

Dev Query

species count
Total 674911 (-47802)
Mus musculus 212684 (+10846)
Homo sapiens 196288 (+65314)
Caenorhabditis elegans 76781 (+22918)
Saccharomyces cerevisiae S288C 68224 (-6)
Danio rerio 55998 (-671)
Drosophila melanogaster 49114 (-146961)
organism 10484 (+4425)
Rattus norvegicus 494 (+33)
Canis lupus familiaris 460 (-16)
Drosophila hydei 452 (+452)
Drosophila subobscura 373 (+373)
Drosophila virilis 337 (+337)
Drosophila ananassae 246 (+246)
Drosophila simulans 204 (+204)
Drosophila pseudoobscura pseudoobscura 203 (+203)
Drosophila willistoni 186 (+186)
Bos taurus 160 (-3)
NCBITaxon:7257 153 (+153)
Drosophila funebris 132 (+132)
Felis catus 128 (-4)
NCBITaxon:30019 124 (+124)
NCBITaxon:40372 118 (+118)
NCBITaxon:30033 82 (+82)
NCBITaxon:95109 82 (+82)
Hepatitis B virus 79 (+79)
Drosophila immigrans 72 (+72)
NCBITaxon:7300 69 (+69)
NCBITaxon:7246 63 (+63)
Human immunodeficiency virus 1 60 (+60)
NCBITaxon:30042 56 (+56)
Drosophila buzzatii 55 (+55)
Ovis aries 55 (-2)
Drosophila mauritiana 52 (+52)
Neisseria meningitidis MC58 50 (+50)
Drosophila paulistorum 49 (+49)
Mycobacterium tuberculosis H37Rv 44 (+44)
Drosophila miranda 43 (+43)
Hepacivirus C 40 (+40)
Drosophila littoralis 34 (+34)
NCBITaxon:7218 33 (+33)
Equus caballus 31 (0)
Sus scrofa 30 (-1)
Drosophila ambigua 27 (+27)
NCBITaxon:193351 22 (+22)
Gallus gallus 19 (0)
Micrococcus luteus 18 (+18)
Capra hircus 17 (-1)
Phoenicopterus ruber 17 (0)
NCBITaxon:125945 15 (+15)
Drosophila persimilis 14 (+14)
NCBITaxon:76712 14 (+14)
NCBITaxon:7282 13 (+13)
NCBITaxon:7283 13 (+13)
Drosophila mojavensis 12 (+12)
NCBITaxon:64960 11 (+11)
Drosophila auraria 11 (+11)
Oryctolagus cuniculus 10 (0)
NCBITaxon:46794 10 (+10)
Mustela putorius furo 10 (0)
Jaagsiekte sheep retrovirus 10 (+10)
HIV-1 M:B_HXB2R 10 (+10)
Sindbis virus 9 (+9)
Drosophila sechellia 9 (+9)
Yellow fever virus 8 (+8)
Human alphaherpesvirus 1 7 (+7)
NCBITaxon:30043 7 (+7)
NCBITaxon:169138 7 (+7)
Human rhinovirus B3 6 (+6)
NCBITaxon:161732 6 (+6)
Human herpesvirus 5 strain AD169 6 (+6)
NCBITaxon:42026 6 (+6)
NCBITaxon:47314 6 (+6)
Hepatitis C virus subtype 2a 4 (+4)
Neovison vison 4 (0)
NCBITaxon:46822 4 (+4)
NCBITaxon:40844 4 (+4)
NCBITaxon:69217 4 (+4)
NCBITaxon:30028 4 (+4)
Macaca mulatta 4 (0)
Meleagris gallopavo 3 (0)
NCBITaxon:7252 3 (+3)
Drosophila equinoxialis 3 (+3)
NCBITaxon:198721 3 (+3)
NCBITaxon:30036 3 (+3)
Influenza A virus (A/WSN/1933(H1N1)) 3 (+3)
Mesocricetus auratus 3 (0)
Drosophila pseudoobscura bogotana 3 (+3)
NCBITaxon:94111 3 (+3)
Oryzias latipes 3 (-1)
NCBITaxon:218680 3 (+3)
Drosophila takahashii 3 (+3)
NCBITaxon:7271 2 (+2)
NCBITaxon:7270 2 (+2)
Drosophila eugracilis 2 (+2)
NCBITaxon:133981 2 (+2)
NCBITaxon:30023 2 (+2)
NCBITaxon:141217 2 (+2)
Vulpes vulpes 2 (0)
Drosophila erecta 2 (+2)
NCBITaxon:30029 2 (+2)
NCBITaxon:42062 2 (+2)
NCBITaxon:134002 2 (+2)
NCBITaxon:133978 2 (+2)
Drosophila arizonae 2 (+2)
NCBITaxon:76946 2 (+2)
Scaptodrosophila lebanonensis 2 (+2)
NCBITaxon:195057 2 (+2)
NCBITaxon:7291 2 (+2)
Bubalus bubalis 2 (0)
Drosophila madeirensis 2 (+2)
NCBITaxon:30056 1 (+1)
Human adenovirus 5 1 (+1)
NCBITaxon:103846 1 (+1)
Ursus americanus 1 (0)
Bos grunniens 1 (0)
NCBITaxon:9690 1 (0)
NCBITaxon:61402 1 (0)
NCBITaxon:38666 1 (0)
Panthera tigris tigris 1 (0)
NCBITaxon:310057 1 (+1)
NCBITaxon:7284 1 (+1)
NCBITaxon:7297 1 (+1)
NCBITaxon:27706 1 (0)
NCBITaxon:66368 1 (+1)
Drosophila lutescens 1 (+1)
Vulpes lagopus 1 (0)
Influenzavirus A 1 (+1)
NCBITaxon:87177 1 (0)
NCBITaxon:57910 1 (+1)
NCBITaxon:32536 1 (0)
Numida meleagris 1 (0)
NCBITaxon:7279 1 (+1)
NCBITaxon:70340 1 (0)
Coturnix japonica 1 (0)
Hepatitis C virus subtype 1b 1 (+1)
NCBITaxon:43597 1 (0)
NCBITaxon:7231 1 (+1)
Salmonella enterica subsp. enterica serovar Typhi 1 (+1)
NCBITaxon:1392869 1 (+1)
Mammuthus primigenius 1 (0)
Listeria innocua 1 (+1)
Dengue virus group 1 (+1)
Drosophila yakuba 1 (+1)
NCBITaxon:521007 1 (+1)
Sciurus carolinensis 1 (0)
NCBITaxon:68352 1 (0)
Peromyscus polionotus 1 (0)
Mus musculus domesticus 0 (-7540)
Other 0 (0)

Gene Anatomy By Taxa

Production Query

Dev Query

source count
Total 1848540 (-9931)
Mus musculus 550723 (+120737)
Homo sapiens 517898 (-10112)
Danio rerio 367207 (-20)
Drosophila melanogaster 197522 (-219)
Rattus norvegicus 142624 (0)
Caenorhabditis elegans 71618 (-90)
Hepacivirus C 100 (+100)
Human immunodeficiency virus 1 80 (+80)
Sindbis virus 40 (+40)
Yellow fever virus 40 (+40)
Hepatitis B virus 40 (+40)
HIV-1 M:B_HXB2R 40 (+40)
Pseudomonas aeruginosa 28 (+28)
Influenzavirus A 20 (+20)
Human rhinovirus B3 20 (+20)
Human adenovirus 5 20 (+20)
Murine leukemia virus 20 (+20)
Fusarium oxysporum species complex 20 (+20)
Hepatitis C virus subtype 1b 20 (+20)
Hepatitis C virus subtype 2a 20 (+20)
Human herpesvirus 5 strain AD169 20 (+20)
Salmonella enterica subsp. enterica serovar Typhi 20 (+20)
Human respiratory syncytial virus B 20 (+20)
HIV-1 M:C_ETH2220 20 (+20)
NCBITaxon:1392869 20 (+20)
Escherichia coli ATCC 8739 20 (+20)
NCBITaxon:526980 20 (+20)
Lactobacillus acidophilus 20 (+20)
Listeria innocua 20 (+20)
Human alphaherpesvirus 1 20 (+20)
Dengue virus group 20 (+20)
Micrococcus luteus 20 (+20)
Neisseria meningitidis MC58 20 (+20)
Helicobacter pylori 20 (+20)
Mycobacterium tuberculosis H37Rv 20 (+20)
Jaagsiekte sheep retrovirus 20 (+20)
Staphylococcus aureus 20 (+20)
Neisseria meningitidis 20 (+20)
Escherichia coli 20 (+20)
Lactobacillus johnsonii NCC 533 20 (+20)
NCBITaxon:521007 20 (+20)
Influenza A virus (A/WSN/1933(H1N1)) 20 (+20)
Other 0 (0)
Mus musculus domesticus 0 (-121175)

Publication Genotype By Source

Production Query

Dev Query

source count
Total 127930 (-201093)
https://data.monarchinitiative.org/ttl/mgi.ttl 79480 (+79480)
https://data.monarchinitiative.org/ttl/zfin.ttl 28888 (-17)
https://data.monarchinitiative.org/ttl/coriell.ttl 10395 (+95)
https://data.monarchinitiative.org/ttl/go.ttl 9167 (+157)
Other 0 (0)
https://data.monarchinitiative.org/ttl/flybase.ttl 0 (-280808)

Disease Phenotype Associations By Source

Production Query

Dev Query

species count
Total 156644 (+10624)
https://data.monarchinitiative.org/ttl/hpoa.ttl 154601 (+10659)
https://data.monarchinitiative.org/ttl/monarch.ttl 1768 (-36)
https://data.monarchinitiative.org/ttl/omia.ttl 221 (0)
https://data.monarchinitiative.org/ttl/omim.ttl 2 (+2)
Other 0 (0)

Gene Phenotype Associations By Source

Production Query

Dev Query

source count
Total 674911 (-47802)
https://data.monarchinitiative.org/ttl/mgi_slim.ttl 209430 (+3660)
https://data.monarchinitiative.org/ttl/hpoa.ttl 148479 (+17525)
https://data.monarchinitiative.org/ttl/orphanet.ttl 111894 (+14108)
https://data.monarchinitiative.org/ttl/clinvar.nt 100156 (+100156)
https://data.monarchinitiative.org/ttl/omim.ttl 86440 (+7846)
https://data.monarchinitiative.org/ttl/wormbase.ttl 76781 (+23064)
https://data.monarchinitiative.org/ttl/sgd.ttl 68224 (0)
https://data.monarchinitiative.org/ttl/zfinslim.ttl 61892 (+8458)
https://data.monarchinitiative.org/ttl/flybase.ttl 57210 (-138865)
https://data.monarchinitiative.org/ttl/gwascatalog.ttl 48682 (+48677)
https://data.monarchinitiative.org/ttl/impc.ttl 17417 (0)
https://data.monarchinitiative.org/ttl/mgi.ttl 16087 (0)
https://data.monarchinitiative.org/ttl/coriell.ttl 7151 (+286)
https://data.monarchinitiative.org/ttl/mmrrc.ttl 5164 (+50)
https://data.monarchinitiative.org/ttl/omia.ttl 981 (-28)
https://data.monarchinitiative.org/ttl/monarch.ttl 960 (-28)
https://data.monarchinitiative.org/ttl/rgd.ttl 489 (+33)
Other 0 (0)
https://data.monarchinitiative.org/ttl/clinvar.ttl 0 (-89034)
https://data.monarchinitiative.org/ttl/zfin.ttl 0 (-8943)
https://data.monarchinitiative.org/ttl/go.ttl 0 (-9775)

Gene Pathway By Source

Production Query

Dev Query

source count
Total 204026 (-112647)
https://data.monarchinitiative.org/ttl/reactome.ttl 204026 (-9995)
https://data.monarchinitiative.org/ttl/ctd.ttl 0 (-135667)
Other 0 (0)
https://data.monarchinitiative.org/ttl/ensembl.ttl 0 (-695)

Pathway Phenotype By Source

Production Query

Dev Query

source count
https://data.monarchinitiative.org/ttl/reactome.ttl 33007 (-878)
Total 33007 (-62695)
https://data.monarchinitiative.org/ttl/coriell.ttl 26449 (-59761)
https://data.monarchinitiative.org/ttl/hpoa.ttl 26449 (-59761)
https://data.monarchinitiative.org/ttl/omim.ttl 26409 (-59801)
https://data.monarchinitiative.org/ttl/animalqtldb.ttl 6558 (-2934)
https://data.monarchinitiative.org/ttl/gwascatalog.ttl 2236 (+2236)
https://data.monarchinitiative.org/ttl/orphanet.ttl 204 (-212)
Other 0 (0)
https://data.monarchinitiative.org/ttl/ctd.ttl 0 (-84168)

Gene Disease Non-Causal Associations By Source

Production Query

Dev Query

species count
Total 18556 (+1061)
https://data.monarchinitiative.org/ttl/gwascatalog.ttl 16669 (+16428)
https://data.monarchinitiative.org/ttl/orphanet.ttl 1214 (+31)
https://data.monarchinitiative.org/ttl/omim.ttl 781 (-1)
https://data.monarchinitiative.org/ttl/clinvar.nt 411 (+411)
https://data.monarchinitiative.org/ttl/coriell.ttl 42 (+7)
https://data.monarchinitiative.org/ttl/udp.ttl 2 (-2)
https://data.monarchinitiative.org/ttl/kegg.ttl 0 (-610)
Other 0 (0)
https://data.monarchinitiative.org/ttl/ctd.ttl 0 (-15960)
https://data.monarchinitiative.org/ttl/clinvar.ttl 0 (-388)

Model Disease Associations By Taxa

Production Query

Dev Query

species count
Total 26950 (+482)
Homo sapiens 12537 (+557)
Mus musculus 7856 (+658)
Caenorhabditis elegans 3328 (+291)
Drosophila melanogaster 1207 (-594)
Danio rerio 965 (+57)
Carnivora 684 (0)
Ruminantia 144 (0)
organism 98 (+1)
Felidae 55 (0)
Equidae 34 (0)
sequence_alteration 18 (+18)
Sus 5 (0)
Suidae 5 (0)
Bos taurus 3 (0)
Gallus gallus 3 (0)
NCBITaxon:477815 2 (0)
Bovidae 2 (0)
Other 2 (0)
Mus musculus castaneus 1 (0)
Viridiplantae 1 (0)
Mus musculus domesticus 0 (-504)
Mus musculus musculus 0 (-2)

Variant Phenotype Associations By Source

Production Query

Dev Query

source count
Total 3728615 (+217374)
https://data.monarchinitiative.org/ttl/hpoa.ttl 2193849 (+305375)
https://data.monarchinitiative.org/ttl/clinvar.nt 2109394 (+2109394)
https://data.monarchinitiative.org/ttl/mgi.ttl 735504 (-3051)
https://data.monarchinitiative.org/ttl/animalqtldb.ttl 213937 (+225)
https://data.monarchinitiative.org/ttl/wormbase.ttl 192960 (+72933)
https://data.monarchinitiative.org/ttl/gwascatalog.ttl 168685 (+103412)
https://data.monarchinitiative.org/ttl/zfin.ttl 164385 (+24172)
https://data.monarchinitiative.org/ttl/flybase.ttl 116655 (-252958)
https://data.monarchinitiative.org/ttl/impc.ttl 58252 (+242)
https://data.monarchinitiative.org/ttl/mgi_slim.ttl 33585 (+487)
https://data.monarchinitiative.org/ttl/omim.ttl 8264 (+218)
https://data.monarchinitiative.org/ttl/sgd.ttl 23 (0)
https://data.monarchinitiative.org/ttl/orphanet.ttl 23 (0)
https://data.monarchinitiative.org/ttl/coriell.ttl 3 (0)
Other 0 (0)
https://data.monarchinitiative.org/ttl/clinvar.ttl 0 (-1816735)
https://data.monarchinitiative.org/ttl/go.ttl 0 (-50354)
https://data.monarchinitiative.org/ttl/ctd.ttl 0 (-560)

Genotype Phenotype Associations By Taxa

Production Query

Dev Query

species count
Total 560616 (-400496)
Mus musculus 358862 (+6016)
Danio rerio 107115 (+5186)
Homo sapiens 75564 (+1160)
organism 17500 (+449)
sequence_alteration 1520 (+1520)
Mus musculus molossinus 13 (0)
Mus musculus castaneus 12 (0)
NCBITaxon:477815 12 (0)
NCBITaxon:10102 8 (0)
Mus 4 (0)
Mus musculus musculus 3 (-11)
Mus spretus 2 (0)
Mus musculus bactrianus 1 (0)
Drosophila melanogaster 0 (-412276)
Mus musculus domesticus 0 (-2540)
Other 0 (0)

Case Variant By Source

Production Query

Dev Query

source count
Total 4408 (+6)
https://data.monarchinitiative.org/ttl/coriell.ttl 4296 (+6)
https://data.monarchinitiative.org/ttl/udp.ttl 112 (0)
Other 0 (0)

Variant Disease Associations By Taxa

Production Query

Dev Query

species count
Total 125270 (+20637)
Homo sapiens 124500 (+20678)
organism 752 (-21)
Mus musculus 18 (-3)
Mus musculus domesticus 0 (-16)
Other 0 (0)
Bos taurus 0 (-1)

Publication Phenotype By Source

Production Query

Dev Query

source count
Total 5074688 (-1208160)
https://data.monarchinitiative.org/ttl/ncbigene.ttl 4172928 (+127892)
https://data.monarchinitiative.org/ttl/go.ttl 1038500 (+229170)
https://data.monarchinitiative.org/ttl/biogrid.ttl 338505 (+20734)
https://data.monarchinitiative.org/ttl/flybase.ttl 96829 (-1892315)
https://data.monarchinitiative.org/ttl/sgd.ttl 86732 (0)
https://data.monarchinitiative.org/ttl/zfin.ttl 70503 (+168)
https://data.monarchinitiative.org/ttl/gwascatalog.ttl 60984 (+60075)
https://data.monarchinitiative.org/ttl/mgi.ttl 57869 (+46699)
https://data.monarchinitiative.org/ttl/clinvar.nt 52183 (+52183)
https://data.monarchinitiative.org/ttl/wormbase.ttl 37087 (+8560)
https://data.monarchinitiative.org/ttl/mgi_slim.ttl 31983 (+273)
https://data.monarchinitiative.org/ttl/omim.ttl 28487 (+874)
https://data.monarchinitiative.org/ttl/hgnc.ttl 27638 (+16)
https://data.monarchinitiative.org/ttl/zfinslim.ttl 13191 (+600)
https://data.monarchinitiative.org/ttl/mmrrc.ttl 7505 (+5268)
https://data.monarchinitiative.org/ttl/impc.ttl 4630 (+4491)
https://data.monarchinitiative.org/ttl/animalqtldb.ttl 4613 (0)
https://data.monarchinitiative.org/ttl/rgd.ttl 184 (+11)
https://data.monarchinitiative.org/ttl/hpoa.ttl 4 (0)
Other 0 (0)
https://data.monarchinitiative.org/ttl/clinvar.ttl 0 (-51789)
https://data.monarchinitiative.org/ttl/ctd.ttl 0 (-23683)

Case Genotype By Source

Production Query

Dev Query

source count
Total 3840 (+17)
https://data.monarchinitiative.org/ttl/coriell.ttl 3807 (+17)
https://data.monarchinitiative.org/ttl/udp.ttl 33 (0)
Other 0 (0)

Gene Interactions By Source

Production Query

Dev Query

source count
Total 3763633 (+113519)
https://data.monarchinitiative.org/ttl/string.ttl 2982366 (+2362)
https://data.monarchinitiative.org/ttl/biogrid.ttl 930333 (+153529)
Other 0 (0)

Variant Phenotype Associations By Taxa

Production Query

Dev Query

species count
Total 3728615 (+217374)
Homo sapiens 2288598 (+402682)
organism 446649 (-184844)
Mus musculus 413161 (+57889)
Caenorhabditis elegans 192960 (+101899)
Bos taurus 125205 (+7)
Drosophila melanogaster 111499 (-99292)
Danio rerio 93498 (+1443)
Sus scrofa 34559 (0)
Gallus gallus 13529 (+190)
Ovis aries 1519 (+26)
sequence_alteration 1305 (+1305)
Equus caballus 1009 (+2)
Drosophila hydei 644 (+644)
Drosophila subobscura 596 (+596)
Drosophila virilis 592 (+592)
Drosophila ananassae 398 (+398)
Drosophila pseudoobscura pseudoobscura 321 (+321)
Drosophila simulans 279 (+279)
Drosophila willistoni 251 (+251)
Drosophila funebris 228 (+228)
NCBITaxon:40372 206 (+206)
NCBITaxon:7257 156 (+156)
NCBITaxon:30019 142 (+142)
Drosophila immigrans 108 (+108)
NCBITaxon:95109 100 (+100)
NCBITaxon:30033 95 (+95)
Drosophila mauritiana 76 (+76)
NCBITaxon:7246 76 (+76)
NCBITaxon:7300 71 (+71)
NCBITaxon:30042 68 (+68)
Drosophila buzzatii 67 (+67)
Drosophila miranda 65 (+65)
Drosophila paulistorum 60 (+60)
NCBITaxon:76712 52 (+52)
Drosophila littoralis 45 (+45)
Drosophila persimilis 39 (+39)
NCBITaxon:7218 35 (+35)
Drosophila mojavensis 34 (+34)
Drosophila ambigua 28 (+28)
Saccharomyces cerevisiae S288C 23 (0)
NCBITaxon:193351 22 (+22)
Drosophila auraria 18 (+18)
NCBITaxon:125945 18 (+18)
NCBITaxon:7282 14 (+14)
NCBITaxon:7283 13 (+13)
NCBITaxon:64960 11 (+11)
NCBITaxon:46794 10 (+10)
NCBITaxon:42026 10 (+10)
NCBITaxon:161732 9 (+9)
NCBITaxon:30036 9 (+9)
Drosophila sechellia 9 (+9)
Drosophila takahashii 8 (+8)
NCBITaxon:169138 7 (+7)
NCBITaxon:30043 7 (+7)
NCBITaxon:47314 7 (+7)
NCBITaxon:94111 6 (+6)
NCBITaxon:7291 5 (+5)
Drosophila eugracilis 4 (+4)
NCBITaxon:46822 4 (+4)
NCBITaxon:40844 4 (+4)
NCBITaxon:69217 4 (+4)
NCBITaxon:30028 4 (+4)
NCBITaxon:30023 4 (+4)
NCBITaxon:7252 3 (+3)
Drosophila equinoxialis 3 (+3)
NCBITaxon:103846 3 (+3)
Drosophila pseudoobscura bogotana 3 (+3)
NCBITaxon:218680 3 (+3)
NCBITaxon:198721 3 (+3)
NCBITaxon:7271 2 (+2)
NCBITaxon:76946 2 (+2)
NCBITaxon:133981 2 (+2)
NCBITaxon:7297 2 (+2)
NCBITaxon:30056 2 (+2)
NCBITaxon:141217 2 (+2)
Drosophila erecta 2 (+2)
NCBITaxon:30029 2 (+2)
NCBITaxon:42062 2 (+2)
NCBITaxon:57910 2 (+2)
NCBITaxon:7279 2 (+2)
NCBITaxon:134002 2 (+2)
NCBITaxon:133978 2 (+2)
Drosophila madeirensis 2 (+2)
Drosophila arizonae 2 (+2)
NCBITaxon:7270 2 (+2)
Drosophila yakuba 2 (+2)
Scaptodrosophila lebanonensis 2 (+2)
NCBITaxon:195057 2 (+2)
NCBITaxon:310057 1 (+1)
NCBITaxon:66368 1 (+1)
Drosophila lutescens 1 (+1)
Other 1 (-182)
NCBITaxon:7231 1 (+1)
NCBITaxon:7284 1 (+1)
Mus musculus domesticus 0 (-68851)

Disease Phenotype Associations By Taxa

Production Query

Dev Query

species count
Total 156644 (+10624)
Other 146198 (+194)
Homo sapiens 10446 (+10430)

Gene Pathway By Taxa

Production Query

Dev Query

source count
Total 204026 (-112647)
Homo sapiens 39611 (-102217)
Mus musculus 26978 (+947)
Rattus norvegicus 23563 (+19)
Canis lupus familiaris 19579 (-583)
Sus scrofa 19468 (-2047)
Danio rerio 19119 (-7123)
Bos taurus 18816 (-2304)
Gallus gallus 13867 (-2303)
Drosophila melanogaster 11514 (+795)
Caenorhabditis elegans 11345 (+3206)
HIV-1 M:C_ETH2220 29 (+29)
Mycobacterium tuberculosis H37Rv 23 (+23)
Lactobacillus johnsonii NCC 533 17 (+17)
Human immunodeficiency virus 1 15 (+15)
HIV-1 M:B_HXB2R 15 (+15)
Pseudomonas aeruginosa 9 (+9)
Neisseria meningitidis MC58 6 (+6)
Human rhinovirus B3 5 (+5)
Influenzavirus A 4 (+4)
Sindbis virus 4 (+4)
NCBITaxon:521007 4 (+4)
Hepatitis B virus 3 (+3)
Micrococcus luteus 3 (+3)
Helicobacter pylori 3 (+3)
Yellow fever virus 3 (+3)
Jaagsiekte sheep retrovirus 3 (+3)
Staphylococcus aureus 2 (+2)
Human herpesvirus 5 strain AD169 2 (+2)
Human alphaherpesvirus 1 2 (+2)
Hepacivirus C 2 (+2)
Escherichia coli 2 (+2)
Escherichia coli ATCC 8739 2 (+2)
NCBITaxon:526980 2 (+2)
Dengue virus group 1 (+1)
NCBITaxon:1392869 1 (+1)
Hepatitis C virus subtype 2a 1 (+1)
Salmonella enterica subsp. enterica serovar Typhi 1 (+1)
Human respiratory syncytial virus B 1 (+1)
Lactobacillus acidophilus 1 (+1)
Other 0 (0)
Mus musculus domesticus 0 (-325)
organism 0 (-878)

Gene Variant Associations By Taxa

Production Query

Dev Query

species count
Total 1461763 (-272709)
Mus musculus 861738 (+35917)
Homo sapiens 225245 (+54724)
Drosophila melanogaster 181505 (-288902)
Caenorhabditis elegans 116437 (+284)
Danio rerio 39099 (+1461)
Bos taurus 16962 (-62)
organism 9746 (+5889)
Sus scrofa 3353 (-27)
Gallus gallus 1687 (-25)
Drosophila ananassae 601 (-10)
Drosophila virilis 571 (-6)
Drosophila subobscura 536 (0)
Drosophila hydei 523 (-15)
Drosophila simulans 433 (-6)
Drosophila pseudoobscura pseudoobscura 330 (0)
Equus caballus 235 (-4)
Drosophila willistoni 206 (0)
Rattus norvegicus 180 (-76)
Drosophila funebris 177 (-2)
NCBITaxon:40372 149 (0)
NCBITaxon:30033 123 (0)
NCBITaxon:7257 122 (0)
Drosophila mauritiana 122 (0)
Drosophila buzzatii 121 (-2)
NCBITaxon:95109 95 (0)
Drosophila immigrans 91 (0)
Drosophila miranda 88 (0)
NCBITaxon:30019 88 (0)
NCBITaxon:7246 58 (0)
NCBITaxon:7300 53 (0)
NCBITaxon:76712 52 (0)
NCBITaxon:7231 50 (0)
Drosophila mojavensis 44 (0)
Drosophila affinidisjuncta 42 (0)
Drosophila teissieri 41 (0)
Drosophila persimilis 39 (0)
NCBITaxon:30042 39 (0)
Drosophila littoralis 35 (0)
Drosophila paulistorum 32 (0)
Neisseria meningitidis MC58 30 (+30)
Drosophila takahashii 30 (0)
Mycobacterium tuberculosis H37Rv 27 (+27)
Drosophila lutescens 27 (0)
NCBITaxon:7218 26 (0)
Micrococcus luteus 26 (+26)
Drosophila arizonae 26 (0)
Human immunodeficiency virus 1 24 (+18)
NCBITaxon:111875 24 (0)
NCBITaxon:60717 24 (0)
Human alphaherpesvirus 1 20 (-23)
Hepatitis B virus 19 (+19)
Drosophila ambigua 19 (0)
NCBITaxon:42026 18 (0)
NCBITaxon:7283 18 (0)
NCBITaxon:193351 17 (0)
Hepacivirus C 14 (+14)
NCBITaxon:125945 14 (0)
Drosophila auraria 14 (0)
NCBITaxon:7282 14 (0)
Drosophila sechellia 13 (0)
NCBITaxon:64960 12 (0)
Drosophila hawaiiensis 12 (0)
Jaagsiekte sheep retrovirus 11 (+11)
Yellow fever virus 9 (+9)
Drosophila yakuba 9 (0)
HIV-1 M:B_HXB2R 9 (+9)
Human rhinovirus B3 9 (+9)
NCBITaxon:30036 9 (0)
NCBITaxon:161732 8 (0)
NCBITaxon:47314 8 (0)
NCBITaxon:195057 8 (0)
Sindbis virus 7 (+5)
Ovis aries 7 (-4)
Scaptodrosophila lebanonensis 7 (+1)
NCBITaxon:46794 6 (0)
Drosophila grimshawi 6 (0)
NCBITaxon:30043 6 (0)
Hepatitis C virus subtype 2a 6 (+6)
Human herpesvirus 5 strain AD169 6 (+6)
NCBITaxon:7291 6 (0)
NCBITaxon:94111 6 (0)
NCBITaxon:76946 5 (0)
NCBITaxon:103846 5 (0)
NCBITaxon:77771 5 (+5)
Drosophila eugracilis 4 (0)
Influenza A virus (A/WSN/1933(H1N1)) 4 (+4)
NCBITaxon:30023 4 (0)
NCBITaxon:169138 4 (0)
Canis lupus familiaris 4 (-4)
Hepatitis C virus subtype 1b 3 (+3)
NCBITaxon:7249 3 (0)
Human adenovirus 5 3 (-2)
NCBITaxon:69217 3 (0)
NCBITaxon:218680 3 (0)
NCBITaxon:7297 2 (0)
Drosophila equinoxialis 2 (0)
NCBITaxon:30028 2 (0)
NCBITaxon:30056 2 (0)
NCBITaxon:42062 2 (0)
Xenopus (Silurana) tropicalis 2 (0)
NCBITaxon:46822 2 (0)
NCBITaxon:40844 2 (0)
Drosophila erecta 2 (0)
NCBITaxon:57910 2 (0)
NCBITaxon:7279 2 (0)
Salmonella enterica subsp. enterica serovar Typhi 2 (+2)
Drosophila pseudoobscura bogotana 2 (0)
Dengue virus group 2 (+2)
Pan troglodytes 2 (0)
Drosophila madeirensis 2 (0)
NCBITaxon:310057 1 (0)
NCBITaxon:133981 1 (0)
Drosophila borealis 1 (0)
Drosophila orena 1 (0)
NCBITaxon:141217 1 (0)
Saccharomyces cerevisiae S288C 1 (0)
Arabidopsis thaliana 1 (-7)
NCBITaxon:521007 1 (+1)
Influenzavirus A 1 (+1)
Listeria innocua 1 (+1)
NCBITaxon:1392869 1 (+1)
NCBITaxon:7252 1 (0)
NCBITaxon:7271 1 (0)
NCBITaxon:30029 1 (0)
NCBITaxon:7270 1 (0)
NCBITaxon:134002 1 (0)
NCBITaxon:66368 1 (0)
NCBITaxon:133978 1 (0)
Pseudomonas aeruginosa 1 (0)
NCBITaxon:7284 1 (0)
NCBITaxon:7248 1 (0)
NCBITaxon:198721 1 (0)
Toxoplasma gondii 0 (-3)
NCBITaxon:1162220 0 (-1)
Escherichia virus P1 0 (-17)
Listeria monocytogenes 0 (-5)
Artemia franciscana 0 (-6)
NCBITaxon:139456 0 (-1)
Ciona intestinalis 0 (-4)
NCBITaxon:7010 0 (-4)
Heliothis virescens 0 (-3)
Manduca sexta 0 (-1)
Streptococcus pyogenes 0 (-27)
Kluyveromyces lactis 0 (-7)
NCBITaxon:32630 0 (-197)
Vibrio cholerae 0 (-3)
Oryza sativa 0 (-2)
BNODE:bb2cf0ff025d4622cf5 0 (-16)
NCBITaxon:191210 0 (-2)
Peanut clump virus 0 (-1)
NCBITaxon:55100 0 (-3)
Escherichia virus Lambda 0 (-2)
Spodoptera frugiperda ascovirus 1a 0 (-3)
Entacmaea quadricolor 0 (-21)
BNODE:1f58a0779e93c2ed4d2 0 (-1)
NCBITaxon:7120 0 (-1)
NCBITaxon:191766 0 (-1)
Ixodes scapularis 0 (-1)
Vaccinia virus 0 (-1)
Bacillus subtilis 0 (-3)
Conus marmoreus 0 (-1)
NCBITaxon:55084 0 (-1)
NCBITaxon:10456 0 (-1)
Guillardia theta 0 (-4)
Mus musculus domesticus 0 (-35507)
Human mastadenovirus C 0 (-5)
Drosophila C virus 0 (-4)
BNODE:13446b3196cf19c664c 0 (-5)
Armoracia rusticana 0 (-1)
NCBITaxon:11913 0 (-1)
BNODE:e3f956b320a9fec1cf3 0 (-1)
Neurospora crassa 0 (-94)
Tomato bushy stunt virus 0 (-4)
Pediculus humanus 0 (-1)
NCBITaxon:12287 0 (-8)
Aedes aegypti 0 (-8)
NCBITaxon:39722 0 (-1)
Amphimedon queenslandica 0 (-2)
BNODE:fc3f087ca372cb4d3a9 0 (-14)
Campoletis sonorensis ichnovirus 0 (-2)
Natronomonas pharaonis 0 (-7)
NCBITaxon:5530 0 (-2)
NCBITaxon:35572 0 (-1)
BNODE:e66d689dd86a07aea60 0 (-3)
NCBITaxon:32392 0 (-1)
Potato virus X 0 (-1)
Schistosoma japonicum 0 (-2)
BNODE:eaba42a506034628afd 0 (-3)
Chlamydomonas reinhardtii 0 (-47)
NCBITaxon:7007 0 (-1)
Acyrthosiphon pisum 0 (-2)
Rhodobacter sphaeroides 0 (-1)
NCBITaxon:2138 0 (-3)
BNODE:a35efa09e0fb254e16a 0 (-14)
NCBITaxon:658227 0 (-24)
Penaeus merguiensis 0 (-1)
NCBITaxon:2387 0 (-13)
Anopheles funestus 0 (-4)
Deinococcus radiodurans 0 (-2)
Euglena gracilis 0 (-3)
NCBITaxon:32644 0 (-57)
Enterococcus faecalis 0 (-1)
Saccharomyces cerevisiae 0 (-26882)
Cricket paralysis virus 0 (-2)
Triticum aestivum 0 (-2)
Clostridium tetani 0 (-19)
NCBITaxon:491304 0 (-1)
Culex pipiens 0 (-3)
Vibrio parahaemolyticus 0 (-3)
NCBITaxon:45455 0 (-4)
NCBITaxon:4957 0 (-3)
Escherichia coli 0 (-14337)
Autographa californica nucleopolyhedrovirus 0 (-14)
Musca domestica 0 (-13)
NCBITaxon:6136 0 (-6)
Aequorea victoria 0 (-3561)
NCBITaxon:7111 0 (-8)
Human T-lymphotropic virus 2 0 (-1)
NCBITaxon:12232 0 (-1)
Rhodococcus sp. 0 (-4)
Heteractis crispa 0 (-2)
Megaselia scalaris 0 (-1)
Xenopus laevis 0 (-33)
Human T-cell leukemia virus type I 0 (-1)
Beet yellows virus 0 (-1)
NCBITaxon:2014434 0 (-1)
Human papillomavirus type 18 0 (-2)
NCBITaxon:62873 0 (-2)
NCBITaxon:2389 0 (-15)
Providencia stuartii 0 (-2)
Blattella germanica 0 (-2)
NCBITaxon:3821 0 (-1)
Bradyrhizobium sp. 0 (-7)
BNODE:f8141fdf82ae439afe6 0 (-3)
Apis mellifera 0 (-13)
NCBITaxon:80765 0 (-3)
Danaus plexippus 0 (-6)
NCBITaxon:12227 0 (-11)
Bombyx mori 0 (-18)
NCBITaxon:148603 0 (-6)
Nodamura virus 0 (-1)
NCBITaxon:12022 0 (-4)
Clavularia sp. 0 (-2)
Glycine max 0 (-2)
Turnip crinkle virus 0 (-1)
NCBITaxon:4808 0 (-1)
NCBITaxon:118641 0 (-1)
Bacillus halodurans 0 (-2)
Aeromonas salmonicida 0 (-2)
NCBITaxon:1962953 0 (-1)
Glossina morsitans 0 (-3)
NCBITaxon:703 0 (-1)
BNODE:b1a448feb24de46088b 0 (-1)
Bungarus multicinctus 0 (-2)
Zygosaccharomyces bailii 0 (-3)
Brevundimonas diminuta 0 (-1)
NCBITaxon:7740 0 (-4)
Lucilia cuprina 0 (-3)
NCBITaxon:88209 0 (-2)
Staphylococcus aureus 0 (-3)
Pseudopleuronectes americanus 0 (-3)
NCBITaxon:1649241 0 (-1)
NCBITaxon:46745 0 (-1)
NCBITaxon:161601 0 (-1)
Cricetulus griseus 0 (-1)
Trichoplax adhaerens 0 (-2)
Salmonella enterica subsp. enterica serovar Typhimurium 0 (-6)
Enterobacteria phage T7 0 (-9)
Arachis hypogaea 0 (-1)
NCBITaxon:301887 0 (-1)
Helicobacter pylori 0 (-2)
Hydra vulgaris 0 (-3)
Bordetella pertussis 0 (-5)
NCBITaxon:7119 0 (-2)
Corynephage beta 0 (-13)
Mesocricetus auratus 0 (-5)
NCBITaxon:56459 0 (-1)
NCBITaxon:955 0 (-5)
NCBITaxon:46758 0 (-8)
NCBITaxon:28456 0 (-4)
NCBITaxon:8204 0 (-5)
NCBITaxon:12470 0 (-12)
Anopheles gambiae 0 (-80)
Macaca mulatta polyomavirus 1 0 (-5)
Limulus polyphemus 0 (-2)
Photinus pyralis 0 (-143)
NCBITaxon:499226 0 (-1)
NCBITaxon:45264 0 (-2)
Schistocerca americana 0 (-2)
Rhodopseudomonas palustris 0 (-2)
NCBITaxon:108931 0 (-2)
Zygosaccharomyces rouxii 0 (-4)
NCBITaxon:82678 0 (-2)
Other 0 (0)
NCBITaxon:109461 0 (-2)
Monosiga brevicollis 0 (-3)
NCBITaxon:35743 0 (-1)
Human betaherpesvirus 5 0 (-2)
Oryctolagus cuniculus 0 (-11)
Streptomyces hygroscopicus 0 (-1)
NCBITaxon:7038 0 (-2)
Tribolium castaneum 0 (-24)
Bacillus anthracis 0 (-3)
NCBITaxon:86600 0 (-349)
NCBITaxon:11309 0 (-3)
NCBITaxon:1051066 0 (-1)
Cucurbit aphid-borne yellows virus 0 (-1)
NCBITaxon:51655 0 (-1)
Halocynthia roretzi 0 (-1)
NCBITaxon:1208342 0 (-2)
NCBITaxon:35525 0 (-2)
NCBITaxon:38358 0 (-6)
Hemitripterus americanus 0 (-1)
Ceratitis capitata 0 (-5)
NCBITaxon:496660 0 (-4)
NCBITaxon:196280 0 (-3)
NCBITaxon:418985 0 (-3)
Cupiennius salei 0 (-8)
Ricinus communis 0 (-7)
Hadronyche versuta 0 (-2)
NCBITaxon:95512 0 (-4)

Case Disease By Source

Production Query

Dev Query

source count
Total 11753 (+446)
https://data.monarchinitiative.org/ttl/coriell.ttl 11715 (+446)
https://data.monarchinitiative.org/ttl/udp.ttl 38 (0)
Other 0 (0)

Publication Model By Source

Production Query

Dev Query

source count
Total 48768 (+30290)
https://data.monarchinitiative.org/ttl/wormbase.ttl 15528 (+15277)
https://data.monarchinitiative.org/ttl/mgi.ttl 14965 (+12959)
https://data.monarchinitiative.org/ttl/go.ttl 12752 (+11679)
https://data.monarchinitiative.org/ttl/coriell.ttl 8639 (+51)
https://data.monarchinitiative.org/ttl/ncbigene.ttl 8024 (+7898)
https://data.monarchinitiative.org/ttl/flybase.ttl 4098 (+1667)
https://data.monarchinitiative.org/ttl/zfin.ttl 2903 (+336)
https://data.monarchinitiative.org/ttl/omia.ttl 2635 (0)
https://data.monarchinitiative.org/ttl/biogrid.ttl 957 (+957)
https://data.monarchinitiative.org/ttl/mgi_slim.ttl 781 (+24)
https://data.monarchinitiative.org/ttl/mmrrc.ttl 102 (+4)
Other 0 (0)

Gene Disease Causal Associations By Source

Production Query

Dev Query

species count
Total 10532 (+400)
https://data.monarchinitiative.org/ttl/orphanet.ttl 6098 (+63)
https://data.monarchinitiative.org/ttl/clinvar.nt 5917 (+5917)
https://data.monarchinitiative.org/ttl/omim.ttl 5331 (+97)
https://data.monarchinitiative.org/ttl/omia.ttl 725 (0)
https://data.monarchinitiative.org/ttl/mgi.ttl 11 (0)
https://data.monarchinitiative.org/ttl/gwascatalog.ttl 8 (+7)
https://data.monarchinitiative.org/ttl/mgi_slim.ttl 7 (+1)
https://data.monarchinitiative.org/ttl/mmrrc.ttl 3 (0)
https://data.monarchinitiative.org/ttl/impc.ttl 1 (0)
https://data.monarchinitiative.org/ttl/clinvar.ttl 0 (-5512)
Other 0 (0)
https://data.monarchinitiative.org/ttl/kegg.ttl 0 (-5308)
https://data.monarchinitiative.org/ttl/ctd.ttl 0 (-4926)

Case Model By Source

Production Query

Dev Query

source count
Total 29866 (+59)
https://data.monarchinitiative.org/ttl/coriell.ttl 29866 (+59)
Other 0 (0)

Case Gene By Source

Production Query

Dev Query

source count
Total 1292 (+26)
https://data.monarchinitiative.org/ttl/coriell.ttl 1290 (+28)
https://data.monarchinitiative.org/ttl/omim.ttl 1267 (+3)
https://data.monarchinitiative.org/ttl/gwascatalog.ttl 127 (+127)
https://data.monarchinitiative.org/ttl/udp.ttl 2 (-2)
Other 0 (0)

Gene Function By Taxa

Production Query

Dev Query

source count
Total 1893759 (+431192)
Mus musculus 341851 (+5702)
Homo sapiens 314708 (+1187)
Rattus norvegicus 294395 (+3348)
Danio rerio 171877 (-3436)
Sus scrofa 137574 (+116059)
Gallus gallus 123144 (+106974)
Bos taurus 121784 (+100664)
Canis lupus familiaris 116201 (+96039)
Caenorhabditis elegans 101391 (+5353)
Drosophila melanogaster 100344 (+602)
Saccharomyces cerevisiae S288C 68899 (+168)
Human immunodeficiency virus 1 176 (+176)
Hepacivirus C 115 (+115)
HIV-1 M:C_ETH2220 109 (+109)
Hepatitis B virus 96 (+96)
Mycobacterium tuberculosis H37Rv 79 (+79)
Human rhinovirus B3 78 (+78)
HIV-1 M:B_HXB2R 72 (+72)
Lactobacillus johnsonii NCC 533 71 (+71)
Sindbis virus 68 (+68)
Human alphaherpesvirus 1 57 (+57)
Dengue virus group 55 (+55)
Yellow fever virus 51 (+51)
NCBITaxon:521007 51 (+51)
Pseudomonas aeruginosa 44 (+44)
Salmonella enterica subsp. enterica serovar Typhi 42 (+42)
Neisseria meningitidis MC58 42 (+42)
Jaagsiekte sheep retrovirus 40 (+40)
Escherichia coli 29 (+29)
Staphylococcus aureus 26 (+26)
Influenzavirus A 25 (+25)
Hepatitis C virus subtype 2a 23 (+23)
Influenza A virus (A/WSN/1933(H1N1)) 23 (+23)
Lactobacillus acidophilus 22 (+22)
Human herpesvirus 5 strain AD169 21 (+21)
Escherichia coli ATCC 8739 21 (+21)
Micrococcus luteus 21 (+21)
NCBITaxon:526980 20 (+20)
Hepatitis C virus subtype 1b 18 (+18)
Helicobacter pylori 18 (+18)
Murine leukemia virus 16 (+16)
Neisseria meningitidis 16 (+16)
Human respiratory syncytial virus B 13 (+13)
Human adenovirus 5 11 (+11)
Fusarium oxysporum species complex 8 (+8)
NCBITaxon:1392869 8 (+8)
Listeria innocua 6 (+6)
Other 0 (0)
Mus musculus domesticus 0 (-2181)
organism 0 (-878)

Case Phenotype By Source

Production Query

Dev Query

source count
Total 1085 (0)
https://data.monarchinitiative.org/ttl/udp.ttl 1076 (0)
https://data.monarchinitiative.org/ttl/coriell.ttl 9 (0)
Other 0 (0)

Genotype Phenotype Associations By Source

Production Query

Dev Query

source count
Total 560616 (-400496)
https://data.monarchinitiative.org/ttl/mgi.ttl 338531 (+4863)
https://data.monarchinitiative.org/ttl/zfin.ttl 107115 (+17185)
https://data.monarchinitiative.org/ttl/coriell.ttl 75564 (+1160)
https://data.monarchinitiative.org/ttl/hpoa.ttl 75561 (+1160)
https://data.monarchinitiative.org/ttl/impc.ttl 28433 (0)
https://data.monarchinitiative.org/ttl/mpd.ttl 10963 (+578)
https://data.monarchinitiative.org/ttl/mgi_slim.ttl 10 (0)
https://data.monarchinitiative.org/ttl/go.ttl 0 (-12006)
Other 0 (0)
https://data.monarchinitiative.org/ttl/flybase.ttl 0 (-412276)

Publication Variant By Source

Production Query

Dev Query

source count
Total 5414290 (-2737197)
https://data.monarchinitiative.org/ttl/ncbigene.ttl 4299396 (+130528)
https://data.monarchinitiative.org/ttl/animalqtldb.ttl 250257 (+785)
https://data.monarchinitiative.org/ttl/clinvar.nt 159479 (+159479)
https://data.monarchinitiative.org/ttl/mgi.ttl 155924 (+155920)
https://data.monarchinitiative.org/ttl/flybase.ttl 151798 (-3531815)
https://data.monarchinitiative.org/ttl/gwascatalog.ttl 115064 (+33102)
https://data.monarchinitiative.org/ttl/wormbase.ttl 107268 (+43753)
https://data.monarchinitiative.org/ttl/zfin.ttl 69249 (+1299)
https://data.monarchinitiative.org/ttl/omim.ttl 43518 (+694)
https://data.monarchinitiative.org/ttl/coriell.ttl 38373 (+260)
https://data.monarchinitiative.org/ttl/hgnc.ttl 32415 (+570)
https://data.monarchinitiative.org/ttl/go.ttl 29181 (+864)
https://data.monarchinitiative.org/ttl/mgi_slim.ttl 7609 (+59)
https://data.monarchinitiative.org/ttl/kegg.ttl 6194 (+147)
https://data.monarchinitiative.org/ttl/omia.ttl 5191 (0)
https://data.monarchinitiative.org/ttl/impc.ttl 4580 (+4580)
https://data.monarchinitiative.org/ttl/mmrrc.ttl 1606 (-19)
https://data.monarchinitiative.org/ttl/ctd.ttl 1147 (+1107)
https://data.monarchinitiative.org/ttl/biogrid.ttl 884 (+364)
https://data.monarchinitiative.org/ttl/hpoa.ttl 120 (+120)
https://data.monarchinitiative.org/ttl/sgd.ttl 29 (0)
https://data.monarchinitiative.org/ttl/clinvar.ttl 0 (-149825)
Other 0 (0)

Gene Disease Non-causal Associations By Taxa

Production Query

Dev Query

species count
Total 18556 (+1061)
Homo sapiens 18523 (+1345)
Hepacivirus C 6 (+6)
Human immunodeficiency virus 1 5 (+5)
Human alphaherpesvirus 1 5 (+5)
Mycobacterium tuberculosis H37Rv 3 (+3)
Yellow fever virus 3 (+3)
HIV-1 M:B_HXB2R 2 (+2)
Human herpesvirus 5 strain AD169 2 (+2)
Pseudomonas aeruginosa 2 (+2)
Neisseria meningitidis MC58 2 (+2)
NCBITaxon:1392869 1 (+1)
Salmonella enterica subsp. enterica serovar Typhi 1 (+1)
Influenza A virus (A/WSN/1933(H1N1)) 1 (+1)
Drosophila melanogaster 0 (-34)
Rattus norvegicus 0 (-32)
Danio rerio 0 (-24)
Canis lupus familiaris 0 (-1)
Sus scrofa 0 (-5)
Mus musculus domesticus 0 (-5)
Mus musculus 0 (-205)
Caenorhabditis elegans 0 (-4)
Xenopus (Silurana) tropicalis 0 (-1)
Other 0 (0)
Bos taurus 0 (-4)
Gallus gallus 0 (-2)

Variant Disease Associations By Source

Production Query

Dev Query

source count
Total 125270 (+20637)
https://data.monarchinitiative.org/ttl/clinvar.nt 89998 (+89998)
https://data.monarchinitiative.org/ttl/gwascatalog.ttl 33026 (+4302)
https://data.monarchinitiative.org/ttl/coriell.ttl 1050 (+25)
https://data.monarchinitiative.org/ttl/omim.ttl 1016 (-20)
https://data.monarchinitiative.org/ttl/udp.ttl 110 (0)
https://data.monarchinitiative.org/ttl/hpoa.ttl 35 (+35)
https://data.monarchinitiative.org/ttl/mgi.ttl 30 (0)
https://data.monarchinitiative.org/ttl/mgi_slim.ttl 3 (0)
https://data.monarchinitiative.org/ttl/orphanet.ttl 3 (0)
https://data.monarchinitiative.org/ttl/impc.ttl 1 (0)
https://data.monarchinitiative.org/ttl/clinvar.ttl 0 (-73667)
Other 0 (0)
https://data.monarchinitiative.org/ttl/ctd.ttl 0 (-43)

Gene Interactions By Subject Taxa

Production Query

Dev Query

source count
Total 3763633 (+113519)
Homo sapiens 1413518 (+79255)
Mus musculus 729803 (+4385)
Rattus norvegicus 484928 (-1)
Drosophila melanogaster 470895 (+889)
Caenorhabditis elegans 365031 (+23552)
Danio rerio 292821 (-122)
HIV-1 M:C_ETH2220 764 (+764)
Yellow fever virus 763 (+763)
Mycobacterium tuberculosis H37Rv 744 (+744)
Human immunodeficiency virus 1 464 (+464)
Sindbis virus 429 (+429)
Hepacivirus C 324 (+324)
Human rhinovirus B3 321 (+321)
Human alphaherpesvirus 1 304 (+304)
HIV-1 M:B_HXB2R 257 (+257)
Escherichia coli 230 (+230)
Micrococcus luteus 206 (+206)
Helicobacter pylori 201 (+201)
Influenza A virus (A/WSN/1933(H1N1)) 189 (+189)
Pseudomonas aeruginosa 148 (+148)
Neisseria meningitidis MC58 147 (+147)
Hepatitis C virus subtype 2a 121 (+121)
NCBITaxon:521007 119 (+119)
Lactobacillus johnsonii NCC 533 100 (+100)
Human respiratory syncytial virus B 92 (+92)
NCBITaxon:526980 91 (+91)
Staphylococcus aureus 88 (+88)
Salmonella enterica subsp. enterica serovar Typhi 83 (+83)
Dengue virus group 82 (+82)
Human adenovirus 5 59 (+59)
Hepatitis B virus 57 (+57)
Hepatitis C virus subtype 1b 48 (+48)
Neisseria meningitidis 35 (+35)
Escherichia coli ATCC 8739 29 (+29)
Listeria innocua 28 (+28)
Influenzavirus A 27 (+27)
Other 27 (+1)
Murine leukemia virus 14 (+14)
Jaagsiekte sheep retrovirus 14 (+14)
Fusarium oxysporum species complex 11 (+11)
Human herpesvirus 5 strain AD169 10 (+10)
Lactobacillus acidophilus 7 (+7)
NCBITaxon:1392869 4 (+4)
Mus musculus domesticus 0 (-1026)
organism 0 (-24)

Gene Disease Causal Associations By Taxa

Production Query

Dev Query

species count
Total 10532 (+400)
Homo sapiens 9777 (+380)
Canis lupus familiaris 230 (0)
Bos taurus 120 (0)
Felis catus 62 (0)
Ovis aries 47 (0)
Gallus gallus 41 (0)
Equus caballus 39 (0)
Sus scrofa 38 (0)
Capra hircus 15 (0)
Oryctolagus cuniculus 12 (0)
Mus musculus 12 (+1)
Coturnix japonica 9 (0)
Neovison vison 5 (0)
Equus asinus 5 (0)
Bubalus bubalis 4 (0)
Mycobacterium tuberculosis H37Rv 4 (+4)
Mesocricetus auratus 4 (0)
Hepacivirus C 4 (+4)
Bos grunniens 3 (0)
Macaca mulatta 3 (0)
NCBITaxon:198806 3 (0)
Vulpes lagopus 3 (0)
Oryzias latipes 3 (0)
NCBITaxon:32536 2 (0)
NCBITaxon:48883 2 (0)
Mustela putorius furo 2 (0)
Meleagris gallopavo 2 (0)
Human alphaherpesvirus 1 2 (+2)
Vulpes vulpes 2 (0)
Sindbis virus 2 (+2)
Macaca fascicularis 2 (0)
Neisseria meningitidis MC58 2 (+2)
Hepatitis B virus 2 (+2)
Mammuthus primigenius 2 (0)
Micrococcus luteus 2 (+2)
Rattus norvegicus 1 (0)
NCBITaxon:9691 1 (0)
Canis latrans 1 (0)
Human immunodeficiency virus 1 1 (+1)
NCBITaxon:9690 1 (0)
Panthera tigris 1 (0)
NCBITaxon:43597 1 (0)
NCBITaxon:118797 1 (0)
NCBITaxon:57662 1 (0)
NCBITaxon:57661 1 (0)
NCBITaxon:38666 1 (0)
Panthera tigris tigris 1 (0)
NCBITaxon:9579 1 (0)
Sciurus carolinensis 1 (0)
Peromyscus maniculatus 1 (0)
NCBITaxon:61406 1 (0)
NCBITaxon:103584 1 (0)
NCBITaxon:8523 1 (0)
Takifugu rubripes 1 (0)
Phoenicopterus ruber 1 (0)
Cebus apella 1 (0)
Jaagsiekte sheep retrovirus 1 (+1)
Tursiops truncatus 1 (0)
NCBITaxon:54059 1 (0)
NCBITaxon:61386 1 (0)
Ctenopharyngodon idella 1 (0)
NCBITaxon:61402 1 (0)
Ursus americanus 1 (0)
Aepyceros melampus 1 (0)
NCBITaxon:37029 1 (0)
NCBITaxon:61455 1 (0)
Gorilla gorilla 1 (0)
NCBITaxon:87177 1 (0)
NCBITaxon:255217 1 (0)
Anas platyrhynchos 1 (0)
NCBITaxon:46844 1 (0)
Numida meleagris 1 (0)
Balaenoptera acutorostrata 1 (0)
NCBITaxon:70340 1 (0)
Hylobates lar 1 (0)
Symphalangus syndactylus 1 (0)
NCBITaxon:34892 1 (0)
Columba livia 1 (0)
Elephas maximus 1 (0)
Astyanax 1 (0)
Delphinapterus leucas 1 (0)
Cavia porcellus 1 (0)
Dromaius novaehollandiae 1 (0)
Camelus dromedarius 1 (0)
NCBITaxon:345164 1 (0)
NCBITaxon:9773 1 (0)
Rangifer tarandus 1 (0)
Pan troglodytes 1 (0)
Coturnix coturnix 1 (0)
NCBITaxon:120794 1 (0)
Macaca fuscata 1 (0)
Canis lupus 1 (0)
Bos mutus 1 (0)
Peromyscus polionotus 1 (0)
NCBITaxon:273489 1 (0)
NCBITaxon:338458 1 (0)
Sus scrofa domesticus 1 (0)
NCBITaxon:68352 1 (0)
NCBITaxon:328808 1 (0)
Oreochromis niloticus 1 (0)
Other 0 (0)
Mus musculus domesticus 0 (-1)

Gene Variant Associations By Source

Production Query

Dev Query

source count
Total 1461763 (-272709)
https://data.monarchinitiative.org/ttl/mgi.ttl 839376 (+976)
https://data.monarchinitiative.org/ttl/flybase.ttl 192674 (-336480)
https://data.monarchinitiative.org/ttl/clinvar.nt 133777 (+133777)
https://data.monarchinitiative.org/ttl/wormbase.ttl 116276 (+305)
https://data.monarchinitiative.org/ttl/gwascatalog.ttl 61220 (+61220)
https://data.monarchinitiative.org/ttl/mmrrc.ttl 48904 (+1456)
https://data.monarchinitiative.org/ttl/zfin.ttl 41213 (+1452)
https://data.monarchinitiative.org/ttl/omim.ttl 28013 (+538)
https://data.monarchinitiative.org/ttl/animalqtldb.ttl 23510 (0)
https://data.monarchinitiative.org/ttl/impc.ttl 12948 (0)
https://data.monarchinitiative.org/ttl/go.ttl 5111 (+38)
Other 0 (0)
https://data.monarchinitiative.org/ttl/clinvar.ttl 0 (-134239)
https://data.monarchinitiative.org/ttl/udp.ttl 0 (-3)

Gene Homology By Subject Taxa

Production Query

Dev Query

source count
Total 7872929 (+1091728)
Mus musculus 1041385 (+70711)
Danio rerio 921390 (+93543)
Rattus norvegicus 826979 (+49858)
Caenorhabditis elegans 677928 (+65708)
Sus scrofa 614887 (+27609)
Homo sapiens 607266 (+46596)
Drosophila melanogaster 421174 (+60775)
Canis lupus familiaris 360811 (+360811)
Bos taurus 350190 (+26066)
Equus caballus 323750 (+25319)
Xenopus (Silurana) tropicalis 283671 (+24202)
Gallus gallus 277314 (+30642)
Pan troglodytes 211182 (+14538)
Monodelphis domestica 199095 (+13509)
Macaca mulatta 186072 (+13048)
Felis catus 179215 (+179215)
Anolis carolinensis 175056 (+12428)
Arabidopsis thaliana 113800 (-24596)
Saccharomyces cerevisiae S288C 82562 (+12167)
Ornithorhynchus anatinus 17380 (+1067)
organism 334 (0)
Salmonella enterica subsp. enterica serovar Typhi 131 (+131)
Hepacivirus C 115 (+115)
Hepatitis B virus 75 (+75)
Human immunodeficiency virus 1 73 (+73)
Pseudomonas aeruginosa 67 (+67)
Dengue virus group 61 (+61)
NCBITaxon:526980 58 (+58)
Escherichia coli ATCC 8739 57 (+57)
Escherichia coli 56 (+56)
Murine leukemia virus 51 (+51)
Human alphaherpesvirus 1 51 (+51)
Human adenovirus 5 48 (+48)
Sindbis virus 45 (+45)
Influenzavirus A 43 (+43)
Micrococcus luteus 43 (+43)
HIV-1 M:B_HXB2R 42 (+42)
Hepatitis C virus subtype 1b 41 (+41)
Human respiratory syncytial virus B 39 (+39)
NCBITaxon:521007 39 (+39)
Mycobacterium tuberculosis H37Rv 37 (+37)
NCBITaxon:1392869 35 (+35)
Lactobacillus acidophilus 29 (+29)
Staphylococcus aureus 27 (+27)
Yellow fever virus 26 (+26)
HIV-1 M:C_ETH2220 23 (+23)
Human rhinovirus B3 21 (+21)
Influenza A virus (A/WSN/1933(H1N1)) 19 (+19)
Human herpesvirus 5 strain AD169 17 (+17)
Helicobacter pylori 17 (+17)
Hepatitis C virus subtype 2a 16 (+16)
Neisseria meningitidis MC58 16 (+16)
Neisseria meningitidis 16 (+16)
Fusarium oxysporum species complex 15 (+15)
Jaagsiekte sheep retrovirus 15 (+15)
Listeria innocua 15 (+15)
Lactobacillus johnsonii NCC 533 9 (+9)
Other 0 (0)
Mus musculus domesticus 0 (-12976)

Relations

Production Query

Dev Query

relation count
Total 37063885 (-5376489)
is_about 8843470 (+681842)
has phenotype 4855136 (-288714)
interacts with 3672504 (+48620)
in paralogy relationship with 2927459 (+140529)
Source 2777777 (+183515)
in 1 to 1 orthology relationship with 2552345 (+562735)
Other 2534997 (-2356517)
in orthology relationship with 2103908 (+392480)
expressed in 1848540 (-9931)
involved_in 1217348 (+113593)
is_allele_of 852813 (-168879)
is part of 470272 (+113457)
enables 416744 (+98074)
has_affected_feature 411181 (+253429)
has_genotype 404688 (-343123)
in xenology relationship with 289217 (-4016)
contributes to condition 196430 (+165360)
is marker for 124409 (-15630)
mentions 105117 (-4585576)
pathogenic_for_condition 66901 (+11604)
targets_gene 66681 (-108812)
is_expression_variant_of 64214 (-107054)
colocalizes with 60453 (-22803)
is_reference_allele_of 58315 (+178)
is model of 38665 (+928)
genetically interacts with 30676 (+4446)
derives_from 29866 (+59)
likely_pathogenic_for_condition 23502 (+4828)
causes condition 10693 (-141)
sequence_derives_from 8557 (-141571)
contributes to 460 (+109)
is causal susceptibility factor for 459 (+459)
disease has basis in feature 54 (+1)
is causal germline mutation partially giving rise to 32 (+32)
is_variant_allele_of 2 (0)

Variant Genotype Associations By Source

Production Query

Dev Query

source count
Total 826592 (-858977)
https://data.monarchinitiative.org/ttl/mmrrc.ttl 369418 (+1244)
https://data.monarchinitiative.org/ttl/mgi.ttl 277370 (+6191)
https://data.monarchinitiative.org/ttl/zfin.ttl 161213 (+7851)
https://data.monarchinitiative.org/ttl/impc.ttl 72181 (+237)
https://data.monarchinitiative.org/ttl/coriell.ttl 7276 (+10)
https://data.monarchinitiative.org/ttl/udp.ttl 112 (0)
Other 0 (0)
https://data.monarchinitiative.org/ttl/flybase.ttl 0 (-873495)

Publication Gene By Source

Production Query

Dev Query

source count
Total 5074688 (-1208160)
https://data.monarchinitiative.org/ttl/ncbigene.ttl 4172928 (+127892)
https://data.monarchinitiative.org/ttl/go.ttl 1038500 (+229170)
https://data.monarchinitiative.org/ttl/biogrid.ttl 338505 (+20734)
https://data.monarchinitiative.org/ttl/flybase.ttl 96829 (-1892315)
https://data.monarchinitiative.org/ttl/sgd.ttl 86732 (0)
https://data.monarchinitiative.org/ttl/zfin.ttl 70503 (+168)
https://data.monarchinitiative.org/ttl/gwascatalog.ttl 60984 (+60075)
https://data.monarchinitiative.org/ttl/mgi.ttl 57869 (+46699)
https://data.monarchinitiative.org/ttl/clinvar.nt 52183 (+52183)
https://data.monarchinitiative.org/ttl/wormbase.ttl 37087 (+8560)
https://data.monarchinitiative.org/ttl/mgi_slim.ttl 31983 (+273)
https://data.monarchinitiative.org/ttl/omim.ttl 28487 (+874)
https://data.monarchinitiative.org/ttl/hgnc.ttl 27638 (+16)
https://data.monarchinitiative.org/ttl/zfinslim.ttl 13191 (+600)
https://data.monarchinitiative.org/ttl/mmrrc.ttl 7505 (+5268)
https://data.monarchinitiative.org/ttl/impc.ttl 4630 (+4491)
https://data.monarchinitiative.org/ttl/animalqtldb.ttl 4613 (0)
https://data.monarchinitiative.org/ttl/rgd.ttl 184 (+11)
https://data.monarchinitiative.org/ttl/hpoa.ttl 4 (0)
Other 0 (0)
https://data.monarchinitiative.org/ttl/clinvar.ttl 0 (-51789)
https://data.monarchinitiative.org/ttl/ctd.ttl 0 (-23683)

SciGraph Queries

Variant Loci

Production Query

Dev Query

field count
variants 851721 (-15369)

Reagent Targeted Gene

Production Query

Dev Query

field count
rtg 106222 (-138446)

Gene Variant Mix-ups

Production Query

Dev Query

field count
variant 5179 (-5)

Genes

Production Query

Dev Query

field count
genes 1832840 (-667018)

Genes in more than one taxa

Production Query

Dev Query

field count
request timeout 0

Disease Phenotype Mix-ups

Production Query

Dev Query

field count
disease 131 (+3)

Gene Disease Mix-ups

Production Query

Dev Query

field count
gene 21474 (+21474)

Genotypes

Production Query

Dev Query

field count
genotypes 335901 (-441910)

Sequence Features

Production Query

Dev Query

field count
features 7187371 (-2070138)

nodes with subClassOf cycles (depth 2)

Production Query

Dev Query

field count
node_count 2 (+1)

nodes with subClassOf cycles (depth 1)

Production Query

Dev Query

field count
node_count 127 (+126)

Number of edges connected to owl:Nothing

Production Query

Dev Query

field count
nothing 0 (0)