Solr Queries

Model Disease Associations By Source

Production Query

Dev Query

source count
Total 26950 (+482)
https://data.monarchinitiative.org/ttl/coriell.ttl 12540 (+557)
https://data.monarchinitiative.org/ttl/mgi.ttl 7975 (+171)
https://data.monarchinitiative.org/ttl/wormbase.ttl 3328 (+291)
https://data.monarchinitiative.org/ttl/flybase.ttl 1207 (-594)
https://data.monarchinitiative.org/ttl/zfin.ttl 967 (+57)
https://data.monarchinitiative.org/ttl/omia.ttl 933 (0)
Other 0 (0)

Gene Pathway By Taxa

Production Query

Dev Query

source count
Total 204026 (-112647)
Homo sapiens 39620 (-102208)
Mus musculus 26978 (+947)
Rattus norvegicus 23563 (+19)
Canis lupus familiaris 19579 (-583)
Sus scrofa 19468 (-2047)
Danio rerio 19119 (-7123)
Bos taurus 18816 (-2304)
Gallus gallus 13867 (-2303)
Drosophila melanogaster 11514 (+795)
Caenorhabditis elegans 11345 (+3206)
Escherichia coli 42 (+42)
Human immunodeficiency virus 1 30 (+30)
Dengue virus group 13 (+13)
Candida albicans 11 (+11)
Hepacivirus C 7 (+7)
Vaccinia virus WR 7 (+7)
HIV-1 M:C_ETH2220 7 (+7)
NCBITaxon:1073377 6 (+6)
Jaagsiekte sheep retrovirus 5 (+5)
Hepatitis C virus subtype 2a 3 (+3)
Salmonella 3 (+3)
NCBITaxon:70865 3 (+3)
Staphylococcus aureus subsp. aureus 3 (+3)
Ebola virus 2 (+2)
Hepatitis B virus 2 (+2)
Escherichia coli ATCC 8739 2 (+2)
Acinetobacter baumannii 2 (+2)
Bacillus megaterium 2 (+2)
NCBITaxon:536056 2 (+2)
Human alphaherpesvirus 1 2 (+2)
Human alphaherpesvirus 3 1 (+1)
NCBITaxon:387139 1 (+1)
Enterococcus faecalis 1 (+1)
Mus musculus domesticus 0 (-325)
Other 0 (0)
organism 0 (-878)

Gene Phenotype Associations By Taxa

Production Query

Dev Query

species count
Total 675079 (-47634)
Mus musculus 212684 (+10846)
Homo sapiens 196343 (+65369)
Caenorhabditis elegans 76781 (+22918)
Saccharomyces cerevisiae S288C 68224 (-6)
Danio rerio 55998 (-671)
Drosophila melanogaster 49114 (-146961)
organism 10484 (+4425)
Rattus norvegicus 494 (+33)
Canis lupus familiaris 460 (-16)
Drosophila hydei 452 (+452)
Drosophila subobscura 373 (+373)
Drosophila virilis 337 (+337)
Drosophila ananassae 246 (+246)
Drosophila simulans 204 (+204)
Drosophila pseudoobscura pseudoobscura 203 (+203)
Drosophila willistoni 186 (+186)
Bos taurus 160 (-3)
NCBITaxon:7257 153 (+153)
Drosophila funebris 132 (+132)
Vaccinia virus WR 131 (+131)
Felis catus 128 (-4)
NCBITaxon:30019 124 (+124)
Human immunodeficiency virus 1 120 (+120)
NCBITaxon:40372 118 (+118)
NCBITaxon:30033 82 (+82)
NCBITaxon:95109 82 (+82)
Drosophila immigrans 72 (+72)
NCBITaxon:7300 69 (+69)
Hepacivirus C 68 (+68)
NCBITaxon:7246 63 (+63)
Human alphaherpesvirus 1 61 (+61)
NCBITaxon:30042 56 (+56)
Ovis aries 55 (-2)
Drosophila buzzatii 55 (+55)
Drosophila mauritiana 52 (+52)
NCBITaxon:1073377 50 (+50)
Drosophila paulistorum 49 (+49)
Drosophila miranda 43 (+43)
Drosophila littoralis 34 (+34)
NCBITaxon:7218 33 (+33)
Equus caballus 31 (0)
Sus scrofa 30 (-1)
Drosophila ambigua 27 (+27)
NCBITaxon:193351 22 (+22)
Gallus gallus 19 (0)
Phoenicopterus ruber 17 (0)
Capra hircus 17 (-1)
NCBITaxon:125945 15 (+15)
NCBITaxon:76712 14 (+14)
Drosophila persimilis 14 (+14)
NCBITaxon:7283 13 (+13)
Hepatitis C virus subtype 2a 13 (+13)
NCBITaxon:7282 13 (+13)
Drosophila mojavensis 12 (+12)
NCBITaxon:64960 11 (+11)
Drosophila auraria 11 (+11)
Jaagsiekte sheep retrovirus 10 (+10)
Mustela putorius furo 10 (0)
Oryctolagus cuniculus 10 (0)
NCBITaxon:46794 10 (+10)
Drosophila sechellia 9 (+9)
NCBITaxon:30043 7 (+7)
NCBITaxon:169138 7 (+7)
NCBITaxon:47314 6 (+6)
NCBITaxon:161732 6 (+6)
NCBITaxon:42026 6 (+6)
Hepatitis B virus 5 (+5)
Candida albicans 5 (+5)
NCBITaxon:69217 4 (+4)
Macaca mulatta 4 (0)
NCBITaxon:46822 4 (+4)
NCBITaxon:40844 4 (+4)
HIV-1 M:C_ETH2220 4 (+4)
NCBITaxon:30028 4 (+4)
Neovison vison 4 (0)
NCBITaxon:30036 3 (+3)
Human alphaherpesvirus 3 3 (+3)
Drosophila takahashii 3 (+3)
Mesocricetus auratus 3 (0)
Meleagris gallopavo 3 (0)
NCBITaxon:198721 3 (+3)
NCBITaxon:218680 3 (+3)
NCBITaxon:7252 3 (+3)
NCBITaxon:94111 3 (+3)
Drosophila equinoxialis 3 (+3)
Oryzias latipes 3 (-1)
Drosophila pseudoobscura bogotana 3 (+3)
NCBITaxon:195057 2 (+2)
Scaptodrosophila lebanonensis 2 (+2)
NCBITaxon:134002 2 (+2)
NCBITaxon:7291 2 (+2)
Drosophila madeirensis 2 (+2)
NCBITaxon:141217 2 (+2)
NCBITaxon:133981 2 (+2)
NCBITaxon:7270 2 (+2)
NCBITaxon:76946 2 (+2)
Drosophila arizonae 2 (+2)
Bubalus bubalis 2 (0)
NCBITaxon:30029 2 (+2)
NCBITaxon:7271 2 (+2)
Drosophila erecta 2 (+2)
Drosophila eugracilis 2 (+2)
NCBITaxon:30023 2 (+2)
NCBITaxon:42062 2 (+2)
Vulpes vulpes 2 (0)
NCBITaxon:133978 2 (+2)
NCBITaxon:103846 1 (+1)
NCBITaxon:310057 1 (+1)
NCBITaxon:9690 1 (0)
Bos grunniens 1 (0)
NCBITaxon:61402 1 (0)
NCBITaxon:57910 1 (+1)
NCBITaxon:7231 1 (+1)
NCBITaxon:7297 1 (+1)
Peromyscus polionotus 1 (0)
Coturnix japonica 1 (0)
Human adenovirus 5 1 (+1)
NCBITaxon:32536 1 (0)
NCBITaxon:70340 1 (0)
NCBITaxon:43597 1 (0)
Salmonella 1 (+1)
NCBITaxon:68352 1 (0)
NCBITaxon:66368 1 (+1)
NCBITaxon:38666 1 (0)
NCBITaxon:30056 1 (+1)
NCBITaxon:87177 1 (0)
Bacillus megaterium 1 (+1)
Ursus americanus 1 (0)
Mammuthus primigenius 1 (0)
Drosophila lutescens 1 (+1)
Drosophila yakuba 1 (+1)
Ebola virus 1 (+1)
Numida meleagris 1 (0)
NCBITaxon:7279 1 (+1)
NCBITaxon:7284 1 (+1)
Panthera tigris tigris 1 (0)
Sciurus carolinensis 1 (0)
Vulpes lagopus 1 (0)
Staphylococcus aureus subsp. aureus 1 (+1)
NCBITaxon:27706 1 (0)
Mus musculus domesticus 0 (-7540)
Other 0 (0)

Gene Variant Associations By Taxa

Production Query

Dev Query

species count
Total 1457304 (-277168)
Mus musculus 861738 (+35917)
Homo sapiens 220784 (+50263)
Drosophila melanogaster 181505 (-288902)
Caenorhabditis elegans 116437 (+284)
Danio rerio 39099 (+1461)
Bos taurus 16962 (-62)
organism 9746 (+5889)
Sus scrofa 3353 (-27)
Gallus gallus 1687 (-25)
Drosophila ananassae 601 (-10)
Drosophila virilis 571 (-6)
Drosophila subobscura 536 (0)
Drosophila hydei 523 (-15)
Drosophila simulans 433 (-6)
Drosophila pseudoobscura pseudoobscura 330 (0)
Equus caballus 235 (-4)
Drosophila willistoni 206 (0)
Rattus norvegicus 180 (-76)
Drosophila funebris 177 (-2)
NCBITaxon:40372 149 (0)
NCBITaxon:30033 123 (0)
Drosophila mauritiana 122 (0)
NCBITaxon:7257 122 (0)
Drosophila buzzatii 121 (-2)
NCBITaxon:95109 95 (0)
Drosophila immigrans 91 (0)
Drosophila miranda 88 (0)
NCBITaxon:30019 88 (0)
NCBITaxon:7246 58 (0)
Hepacivirus C 56 (+56)
NCBITaxon:7300 53 (0)
NCBITaxon:76712 52 (0)
NCBITaxon:7231 50 (0)
Drosophila mojavensis 44 (0)
Human immunodeficiency virus 1 43 (+37)
Drosophila affinidisjuncta 42 (0)
Drosophila teissieri 41 (0)
Drosophila persimilis 39 (0)
NCBITaxon:30042 39 (0)
Drosophila littoralis 35 (0)
Vaccinia virus WR 32 (+32)
Drosophila paulistorum 32 (0)
Drosophila takahashii 30 (0)
NCBITaxon:1073377 30 (+30)
Drosophila lutescens 27 (0)
Drosophila arizonae 26 (0)
NCBITaxon:7218 26 (0)
NCBITaxon:60717 24 (0)
NCBITaxon:111875 24 (0)
Drosophila ambigua 19 (0)
NCBITaxon:42026 18 (0)
NCBITaxon:7283 18 (0)
NCBITaxon:193351 17 (0)
Drosophila auraria 14 (0)
NCBITaxon:125945 14 (0)
NCBITaxon:7282 14 (0)
HIV-1 M:C_ETH2220 13 (+13)
Drosophila sechellia 13 (0)
NCBITaxon:64960 12 (0)
Candida albicans 12 (+12)
Drosophila hawaiiensis 12 (0)
Jaagsiekte sheep retrovirus 11 (+11)
Hepatitis C virus subtype 2a 11 (+11)
Human alphaherpesvirus 1 10 (-33)
NCBITaxon:30036 9 (0)
Drosophila yakuba 9 (0)
NCBITaxon:195057 8 (0)
NCBITaxon:47314 8 (0)
NCBITaxon:161732 8 (0)
Ovis aries 7 (-4)
Scaptodrosophila lebanonensis 7 (+1)
NCBITaxon:30043 6 (0)
Drosophila grimshawi 6 (0)
NCBITaxon:7291 6 (0)
NCBITaxon:94111 6 (0)
NCBITaxon:46794 6 (0)
NCBITaxon:77771 5 (+5)
NCBITaxon:76946 5 (0)
NCBITaxon:103846 5 (0)
NCBITaxon:169138 4 (0)
Hepatitis B virus 4 (+4)
NCBITaxon:30023 4 (0)
Canis lupus familiaris 4 (-4)
Drosophila eugracilis 4 (0)
Human adenovirus 5 3 (-2)
NCBITaxon:218680 3 (0)
NCBITaxon:69217 3 (0)
Escherichia coli 3 (-14334)
Human alphaherpesvirus 3 3 (+3)
NCBITaxon:7249 3 (0)
Salmonella 2 (+2)
Drosophila pseudoobscura bogotana 2 (0)
Drosophila madeirensis 2 (0)
NCBITaxon:57910 2 (0)
Pan troglodytes 2 (0)
NCBITaxon:30056 2 (0)
NCBITaxon:46822 2 (0)
NCBITaxon:7279 2 (0)
NCBITaxon:30028 2 (0)
Drosophila equinoxialis 2 (0)
NCBITaxon:70865 2 (+2)
NCBITaxon:40844 2 (0)
Xenopus (Silurana) tropicalis 2 (0)
NCBITaxon:7297 2 (0)
Drosophila erecta 2 (0)
NCBITaxon:42062 2 (0)
NCBITaxon:30029 1 (0)
NCBITaxon:66368 1 (0)
NCBITaxon:141217 1 (0)
NCBITaxon:133981 1 (0)
NCBITaxon:7252 1 (0)
Ebola virus 1 (+1)
NCBITaxon:7271 1 (0)
Drosophila orena 1 (0)
NCBITaxon:198721 1 (0)
NCBITaxon:7248 1 (0)
NCBITaxon:133978 1 (0)
Staphylococcus aureus subsp. aureus 1 (+1)
NCBITaxon:310057 1 (0)
NCBITaxon:134002 1 (0)
NCBITaxon:7284 1 (0)
Arabidopsis thaliana 1 (-7)
Saccharomyces cerevisiae S288C 1 (0)
Bacillus megaterium 1 (+1)
NCBITaxon:7270 1 (0)
Drosophila borealis 1 (0)
NCBITaxon:148603 0 (-6)
Natronomonas pharaonis 0 (-7)
Toxoplasma gondii 0 (-3)
Ixodes scapularis 0 (-1)
Vaccinia virus 0 (-1)
Hydra vulgaris 0 (-3)
NCBITaxon:499226 0 (-1)
Apis mellifera 0 (-13)
Listeria monocytogenes 0 (-5)
Tomato bushy stunt virus 0 (-4)
Armoracia rusticana 0 (-1)
Megaselia scalaris 0 (-1)
NCBITaxon:2387 0 (-13)
NCBITaxon:12287 0 (-8)
NCBITaxon:2138 0 (-3)
NCBITaxon:35525 0 (-2)
NCBITaxon:4957 0 (-3)
Chlamydomonas reinhardtii 0 (-47)
Euglena gracilis 0 (-3)
Cucurbit aphid-borne yellows virus 0 (-1)
Kluyveromyces lactis 0 (-7)
Mus musculus domesticus 0 (-35507)
Danaus plexippus 0 (-6)
NCBITaxon:1962953 0 (-1)
NCBITaxon:28456 0 (-4)
Streptomyces hygroscopicus 0 (-1)
NCBITaxon:62873 0 (-2)
BNODE:f8141fdf82ae439afe6 0 (-3)
Aedes aegypti 0 (-8)
NCBITaxon:191210 0 (-2)
Glossina morsitans 0 (-3)
Hadronyche versuta 0 (-2)
Bradyrhizobium sp. 0 (-7)
Brevundimonas diminuta 0 (-1)
Pediculus humanus 0 (-1)
NCBITaxon:301887 0 (-1)
Aequorea victoria 0 (-3561)
NCBITaxon:39722 0 (-1)
NCBITaxon:161601 0 (-1)
Bordetella pertussis 0 (-5)
Spodoptera frugiperda ascovirus 1a 0 (-3)
NCBITaxon:32644 0 (-57)
Human T-cell leukemia virus type I 0 (-1)
Vibrio parahaemolyticus 0 (-3)
Photinus pyralis 0 (-143)
NCBITaxon:496660 0 (-4)
Trichoplax adhaerens 0 (-2)
Turnip crinkle virus 0 (-1)
NCBITaxon:12227 0 (-11)
Bungarus multicinctus 0 (-2)
Heteractis crispa 0 (-2)
Pseudopleuronectes americanus 0 (-3)
Arachis hypogaea 0 (-1)
NCBITaxon:191766 0 (-1)
Bombyx mori 0 (-18)
NCBITaxon:82678 0 (-2)
NCBITaxon:38358 0 (-6)
Anopheles gambiae 0 (-80)
Enterococcus faecalis 0 (-1)
Anopheles funestus 0 (-4)
Aeromonas salmonicida 0 (-2)
NCBITaxon:4808 0 (-1)
Bacillus halodurans 0 (-2)
Ciona intestinalis 0 (-4)
NCBITaxon:11309 0 (-3)
Cricket paralysis virus 0 (-2)
Schistosoma japonicum 0 (-2)
NCBITaxon:2014434 0 (-1)
Deinococcus radiodurans 0 (-2)
Ceratitis capitata 0 (-5)
Campoletis sonorensis ichnovirus 0 (-2)
Bacillus anthracis 0 (-3)
Rhodococcus sp. 0 (-4)
NCBITaxon:95512 0 (-4)
NCBITaxon:32630 0 (-197)
NCBITaxon:7119 0 (-2)
NCBITaxon:7010 0 (-4)
Blattella germanica 0 (-2)
BNODE:e3f956b320a9fec1cf3 0 (-1)
NCBITaxon:1208342 0 (-2)
Cupiennius salei 0 (-8)
Guillardia theta 0 (-4)
Peanut clump virus 0 (-1)
NCBITaxon:491304 0 (-1)
Autographa californica nucleopolyhedrovirus 0 (-14)
NCBITaxon:108931 0 (-2)
Amphimedon queenslandica 0 (-2)
Rhodobacter sphaeroides 0 (-1)
Cricetulus griseus 0 (-1)
Clavularia sp. 0 (-2)
Xenopus laevis 0 (-33)
Oryza sativa 0 (-2)
NCBITaxon:1162220 0 (-1)
Acyrthosiphon pisum 0 (-2)
Neurospora crassa 0 (-94)
Zygosaccharomyces bailii 0 (-3)
Hemitripterus americanus 0 (-1)
Human papillomavirus type 18 0 (-2)
Escherichia virus P1 0 (-17)
NCBITaxon:12232 0 (-1)
NCBITaxon:118641 0 (-1)
NCBITaxon:86600 0 (-349)
Conus marmoreus 0 (-1)
NCBITaxon:7120 0 (-1)
NCBITaxon:7007 0 (-1)
Providencia stuartii 0 (-2)
BNODE:fc3f087ca372cb4d3a9 0 (-14)
Human mastadenovirus C 0 (-5)
Oryctolagus cuniculus 0 (-11)
NCBITaxon:32392 0 (-1)
Monosiga brevicollis 0 (-3)
Beet yellows virus 0 (-1)
Staphylococcus aureus 0 (-3)
Pseudomonas aeruginosa 0 (-1)
NCBITaxon:7038 0 (-2)
Schistocerca americana 0 (-2)
Sindbis virus 0 (-2)
Penaeus merguiensis 0 (-1)
NCBITaxon:45455 0 (-4)
NCBITaxon:703 0 (-1)
NCBITaxon:45264 0 (-2)
NCBITaxon:56459 0 (-1)
NCBITaxon:7740 0 (-4)
Halocynthia roretzi 0 (-1)
Ricinus communis 0 (-7)
Limulus polyphemus 0 (-2)
BNODE:e66d689dd86a07aea60 0 (-3)
NCBITaxon:35743 0 (-1)
NCBITaxon:55084 0 (-1)
Drosophila C virus 0 (-4)
NCBITaxon:3821 0 (-1)
Heliothis virescens 0 (-3)
NCBITaxon:7111 0 (-8)
Lucilia cuprina 0 (-3)
Streptococcus pyogenes 0 (-27)
Rhodopseudomonas palustris 0 (-2)
BNODE:eaba42a506034628afd 0 (-3)
Salmonella enterica subsp. enterica serovar Typhimurium 0 (-6)
Clostridium tetani 0 (-19)
Artemia franciscana 0 (-6)
NCBITaxon:46758 0 (-8)
NCBITaxon:10456 0 (-1)
NCBITaxon:2389 0 (-15)
NCBITaxon:80765 0 (-3)
Triticum aestivum 0 (-2)
NCBITaxon:12022 0 (-4)
NCBITaxon:658227 0 (-24)
NCBITaxon:1051066 0 (-1)
Culex pipiens 0 (-3)
NCBITaxon:196280 0 (-3)
Tribolium castaneum 0 (-24)
Mesocricetus auratus 0 (-5)
Musca domestica 0 (-13)
Helicobacter pylori 0 (-2)
Potato virus X 0 (-1)
BNODE:13446b3196cf19c664c 0 (-5)
NCBITaxon:12470 0 (-12)
Other 0 (0)
NCBITaxon:55100 0 (-3)
NCBITaxon:6136 0 (-6)
BNODE:a35efa09e0fb254e16a 0 (-14)
NCBITaxon:35572 0 (-1)
Corynephage beta 0 (-13)
NCBITaxon:8204 0 (-5)
Manduca sexta 0 (-1)
Human T-lymphotropic virus 2 0 (-1)
NCBITaxon:51655 0 (-1)
Bacillus subtilis 0 (-3)
NCBITaxon:139456 0 (-1)
NCBITaxon:88209 0 (-2)
Human betaherpesvirus 5 0 (-2)
Glycine max 0 (-2)
Entacmaea quadricolor 0 (-21)
BNODE:bb2cf0ff025d4622cf5 0 (-16)
NCBITaxon:418985 0 (-3)
NCBITaxon:955 0 (-5)
Nodamura virus 0 (-1)
Enterobacteria phage T7 0 (-9)
Macaca mulatta polyomavirus 1 0 (-5)
NCBITaxon:5530 0 (-2)
BNODE:b1a448feb24de46088b 0 (-1)
NCBITaxon:1649241 0 (-1)
NCBITaxon:109461 0 (-2)
NCBITaxon:11913 0 (-1)
NCBITaxon:46745 0 (-1)
Vibrio cholerae 0 (-3)
Saccharomyces cerevisiae 0 (-26882)
Escherichia virus Lambda 0 (-2)
BNODE:1f58a0779e93c2ed4d2 0 (-1)
Zygosaccharomyces rouxii 0 (-4)

Variant Genotype Associations By Source

Production Query

Dev Query

source count
Total 826592 (-858977)
https://data.monarchinitiative.org/ttl/mmrrc.ttl 369418 (+1244)
https://data.monarchinitiative.org/ttl/mgi.ttl 277370 (+6191)
https://data.monarchinitiative.org/ttl/zfin.ttl 161213 (+7851)
https://data.monarchinitiative.org/ttl/impc.ttl 72181 (+237)
https://data.monarchinitiative.org/ttl/coriell.ttl 7276 (+10)
https://data.monarchinitiative.org/ttl/udp.ttl 112 (0)
Other 0 (0)
https://data.monarchinitiative.org/ttl/flybase.ttl 0 (-873495)

Gene Disease Causal Associations By Source

Production Query

Dev Query

species count
Total 10447 (+315)
https://data.monarchinitiative.org/ttl/orphanet.ttl 6124 (+89)
https://data.monarchinitiative.org/ttl/clinvar.nt 5631 (+5631)
https://data.monarchinitiative.org/ttl/omim.ttl 5337 (+103)
https://data.monarchinitiative.org/ttl/omia.ttl 725 (0)
https://data.monarchinitiative.org/ttl/mgi.ttl 11 (0)
https://data.monarchinitiative.org/ttl/gwascatalog.ttl 8 (+7)
https://data.monarchinitiative.org/ttl/mgi_slim.ttl 7 (+1)
https://data.monarchinitiative.org/ttl/mmrrc.ttl 3 (0)
https://data.monarchinitiative.org/ttl/impc.ttl 1 (0)
https://data.monarchinitiative.org/ttl/kegg.ttl 0 (-5308)
https://data.monarchinitiative.org/ttl/ctd.ttl 0 (-4926)
https://data.monarchinitiative.org/ttl/clinvar.ttl 0 (-5512)
Other 0 (0)

Gene Variant Associations By Source

Production Query

Dev Query

source count
Total 1457304 (-277168)
https://data.monarchinitiative.org/ttl/mgi.ttl 839376 (+976)
https://data.monarchinitiative.org/ttl/flybase.ttl 192674 (-336480)
https://data.monarchinitiative.org/ttl/clinvar.nt 129318 (+129318)
https://data.monarchinitiative.org/ttl/wormbase.ttl 116276 (+305)
https://data.monarchinitiative.org/ttl/gwascatalog.ttl 61220 (+61220)
https://data.monarchinitiative.org/ttl/mmrrc.ttl 48904 (+1456)
https://data.monarchinitiative.org/ttl/zfin.ttl 41213 (+1452)
https://data.monarchinitiative.org/ttl/omim.ttl 28013 (+538)
https://data.monarchinitiative.org/ttl/animalqtldb.ttl 23510 (0)
https://data.monarchinitiative.org/ttl/impc.ttl 12948 (0)
https://data.monarchinitiative.org/ttl/go.ttl 5111 (+38)
Other 0 (0)
https://data.monarchinitiative.org/ttl/udp.ttl 0 (-3)
https://data.monarchinitiative.org/ttl/clinvar.ttl 0 (-134239)

Case Gene By Source

Production Query

Dev Query

source count
Total 1292 (+26)
https://data.monarchinitiative.org/ttl/coriell.ttl 1290 (+28)
https://data.monarchinitiative.org/ttl/omim.ttl 1267 (+3)
https://data.monarchinitiative.org/ttl/gwascatalog.ttl 127 (+127)
https://data.monarchinitiative.org/ttl/udp.ttl 2 (-2)
Other 0 (0)

Case Variant By Source

Production Query

Dev Query

source count
Total 4408 (+6)
https://data.monarchinitiative.org/ttl/coriell.ttl 4296 (+6)
https://data.monarchinitiative.org/ttl/udp.ttl 112 (0)
Other 0 (0)

Gene Anatomy By Taxa

Production Query

Dev Query

source count
Total 1848540 (-9931)
Mus musculus 550723 (+120737)
Homo sapiens 517933 (-10077)
Danio rerio 367207 (-20)
Drosophila melanogaster 197522 (-219)
Rattus norvegicus 142624 (0)
Caenorhabditis elegans 71618 (-90)
Human immunodeficiency virus 1 200 (+200)
Hepacivirus C 80 (+80)
Escherichia coli 60 (+60)
Hepatitis C virus subtype 2a 40 (+40)
Jaagsiekte sheep retrovirus 40 (+40)
Candida albicans 40 (+40)
HIV-1 M:C_ETH2220 40 (+40)
Staphylococcus aureus subsp. aureus 40 (+40)
NCBITaxon:70865 33 (+33)
Enterococcus faecalis 20 (+20)
Pseudomonas aeruginosa 20 (+20)
Human alphaherpesvirus 3 20 (+20)
Murine leukemia virus 20 (+20)
Hepatitis B virus 20 (+20)
Dengue virus group 20 (+20)
NCBITaxon:387139 20 (+20)
Escherichia coli ATCC 8739 20 (+20)
Acinetobacter baumannii 20 (+20)
Human adenovirus 5 20 (+20)
Bacillus megaterium 20 (+20)
Vaccinia virus WR 20 (+20)
NCBITaxon:1073377 20 (+20)
Salmonella 20 (+20)
NCBITaxon:536056 20 (+20)
Human alphaherpesvirus 1 20 (+20)
Ebola virus 20 (+20)
Mus musculus domesticus 0 (-121175)
Other 0 (0)

Disease Phenotype Associations By Taxa

Production Query

Dev Query

species count
Total 156644 (+10624)
Other 146198 (+194)
Homo sapiens 10446 (+10430)

Variant Disease Associations By Taxa

Production Query

Dev Query

species count
Total 113510 (+8877)
Homo sapiens 112740 (+8918)
organism 752 (-21)
Mus musculus 18 (-3)
Other 0 (0)
Bos taurus 0 (-1)
Mus musculus domesticus 0 (-16)

Model Disease Associations By Taxa

Production Query

Dev Query

species count
Total 26950 (+482)
Homo sapiens 12537 (+557)
Mus musculus 7856 (+658)
Caenorhabditis elegans 3328 (+291)
Drosophila melanogaster 1207 (-594)
Danio rerio 965 (+57)
Carnivora 684 (0)
Ruminantia 144 (0)
organism 98 (+1)
Felidae 55 (0)
Equidae 34 (0)
sequence_alteration 18 (+18)
Sus 5 (0)
Suidae 5 (0)
Bos taurus 3 (0)
Gallus gallus 3 (0)
NCBITaxon:477815 2 (0)
Bovidae 2 (0)
Other 2 (0)
Mus musculus castaneus 1 (0)
Viridiplantae 1 (0)
Mus musculus domesticus 0 (-504)
Mus musculus musculus 0 (-2)

Gene Homology By Subject Taxa

Production Query

Dev Query

source count
Total 7872929 (+1091728)
Mus musculus 1041385 (+70711)
Danio rerio 921390 (+93543)
Rattus norvegicus 826979 (+49858)
Caenorhabditis elegans 677928 (+65708)
Sus scrofa 614887 (+27609)
Homo sapiens 607550 (+46880)
Drosophila melanogaster 421174 (+60775)
Canis lupus familiaris 360811 (+360811)
Bos taurus 350190 (+26066)
Equus caballus 323750 (+25319)
Xenopus (Silurana) tropicalis 283671 (+24202)
Gallus gallus 277314 (+30642)
Pan troglodytes 211182 (+14538)
Monodelphis domestica 199095 (+13509)
Macaca mulatta 186072 (+13048)
Felis catus 179215 (+179215)
Anolis carolinensis 175056 (+12428)
Arabidopsis thaliana 113800 (-24596)
Saccharomyces cerevisiae S288C 82562 (+12167)
Ornithorhynchus anatinus 17380 (+1067)
organism 334 (0)
Human immunodeficiency virus 1 258 (+258)
Hepacivirus C 101 (+101)
Staphylococcus aureus subsp. aureus 86 (+86)
Escherichia coli 57 (+57)
Escherichia coli ATCC 8739 57 (+57)
Murine leukemia virus 51 (+51)
Hepatitis B virus 50 (+50)
Human adenovirus 5 48 (+48)
Hepatitis C virus subtype 2a 44 (+44)
NCBITaxon:70865 44 (+44)
Salmonella 43 (+43)
Acinetobacter baumannii 39 (+39)
Dengue virus group 38 (+38)
Human alphaherpesvirus 3 37 (+37)
HIV-1 M:C_ETH2220 37 (+37)
Jaagsiekte sheep retrovirus 30 (+30)
Ebola virus 28 (+28)
Enterococcus faecalis 26 (+26)
Bacillus megaterium 22 (+22)
NCBITaxon:387139 21 (+21)
Candida albicans 20 (+20)
Pseudomonas aeruginosa 18 (+18)
Vaccinia virus WR 17 (+17)
Human alphaherpesvirus 1 16 (+16)
NCBITaxon:1073377 16 (+16)
Mus musculus domesticus 0 (-12976)
Other 0 (0)

Variant Phenotype Associations By Taxa

Production Query

Dev Query

species count
Total 3573953 (+62712)
Homo sapiens 2133936 (+248020)
organism 446649 (-184844)
Mus musculus 413161 (+57889)
Caenorhabditis elegans 192960 (+101899)
Bos taurus 125205 (+7)
Drosophila melanogaster 111499 (-99292)
Danio rerio 93498 (+1443)
Sus scrofa 34559 (0)
Gallus gallus 13529 (+190)
Ovis aries 1519 (+26)
sequence_alteration 1305 (+1305)
Equus caballus 1009 (+2)
Drosophila hydei 644 (+644)
Drosophila subobscura 596 (+596)
Drosophila virilis 592 (+592)
Drosophila ananassae 398 (+398)
Drosophila pseudoobscura pseudoobscura 321 (+321)
Drosophila simulans 279 (+279)
Drosophila willistoni 251 (+251)
Drosophila funebris 228 (+228)
NCBITaxon:40372 206 (+206)
NCBITaxon:7257 156 (+156)
NCBITaxon:30019 142 (+142)
Drosophila immigrans 108 (+108)
NCBITaxon:95109 100 (+100)
NCBITaxon:30033 95 (+95)
Drosophila mauritiana 76 (+76)
NCBITaxon:7246 76 (+76)
NCBITaxon:7300 71 (+71)
NCBITaxon:30042 68 (+68)
Drosophila buzzatii 67 (+67)
Drosophila miranda 65 (+65)
Drosophila paulistorum 60 (+60)
NCBITaxon:76712 52 (+52)
Drosophila littoralis 45 (+45)
Drosophila persimilis 39 (+39)
NCBITaxon:7218 35 (+35)
Drosophila mojavensis 34 (+34)
Drosophila ambigua 28 (+28)
Saccharomyces cerevisiae S288C 23 (0)
NCBITaxon:193351 22 (+22)
Drosophila auraria 18 (+18)
NCBITaxon:125945 18 (+18)
NCBITaxon:7282 14 (+14)
NCBITaxon:7283 13 (+13)
NCBITaxon:64960 11 (+11)
NCBITaxon:42026 10 (+10)
NCBITaxon:46794 10 (+10)
NCBITaxon:30036 9 (+9)
Drosophila sechellia 9 (+9)
NCBITaxon:161732 9 (+9)
Drosophila takahashii 8 (+8)
NCBITaxon:30043 7 (+7)
NCBITaxon:169138 7 (+7)
NCBITaxon:47314 7 (+7)
NCBITaxon:94111 6 (+6)
NCBITaxon:7291 5 (+5)
NCBITaxon:30028 4 (+4)
NCBITaxon:46822 4 (+4)
NCBITaxon:40844 4 (+4)
Drosophila eugracilis 4 (+4)
NCBITaxon:69217 4 (+4)
NCBITaxon:30023 4 (+4)
NCBITaxon:218680 3 (+3)
NCBITaxon:198721 3 (+3)
NCBITaxon:7252 3 (+3)
Drosophila equinoxialis 3 (+3)
NCBITaxon:103846 3 (+3)
Drosophila pseudoobscura bogotana 3 (+3)
NCBITaxon:195057 2 (+2)
Scaptodrosophila lebanonensis 2 (+2)
Drosophila madeirensis 2 (+2)
NCBITaxon:7297 2 (+2)
NCBITaxon:141217 2 (+2)
NCBITaxon:76946 2 (+2)
NCBITaxon:133981 2 (+2)
NCBITaxon:57910 2 (+2)
Drosophila arizonae 2 (+2)
NCBITaxon:133978 2 (+2)
NCBITaxon:7270 2 (+2)
Drosophila erecta 2 (+2)
NCBITaxon:30056 2 (+2)
Drosophila yakuba 2 (+2)
NCBITaxon:30029 2 (+2)
NCBITaxon:7271 2 (+2)
NCBITaxon:7279 2 (+2)
NCBITaxon:134002 2 (+2)
NCBITaxon:42062 2 (+2)
NCBITaxon:310057 1 (+1)
NCBITaxon:66368 1 (+1)
Drosophila lutescens 1 (+1)
NCBITaxon:7231 1 (+1)
NCBITaxon:7284 1 (+1)
Other 1 (-182)
Mus musculus domesticus 0 (-68851)

Genotype Phenotype Associations By Source

Production Query

Dev Query

source count
Total 560616 (-400496)
https://data.monarchinitiative.org/ttl/mgi.ttl 338531 (+4863)
https://data.monarchinitiative.org/ttl/zfin.ttl 107115 (+17185)
https://data.monarchinitiative.org/ttl/coriell.ttl 75564 (+1160)
https://data.monarchinitiative.org/ttl/hpoa.ttl 75561 (+1160)
https://data.monarchinitiative.org/ttl/impc.ttl 28433 (0)
https://data.monarchinitiative.org/ttl/mpd.ttl 10963 (+578)
https://data.monarchinitiative.org/ttl/mgi_slim.ttl 10 (0)
https://data.monarchinitiative.org/ttl/go.ttl 0 (-12006)
Other 0 (0)
https://data.monarchinitiative.org/ttl/flybase.ttl 0 (-412276)

Case Disease By Source

Production Query

Dev Query

source count
Total 11753 (+446)
https://data.monarchinitiative.org/ttl/coriell.ttl 11715 (+446)
https://data.monarchinitiative.org/ttl/udp.ttl 38 (0)
Other 0 (0)

Publication Model By Source

Production Query

Dev Query

source count
Total 48768 (+30290)
https://data.monarchinitiative.org/ttl/wormbase.ttl 15528 (+15277)
https://data.monarchinitiative.org/ttl/mgi.ttl 14965 (+12959)
https://data.monarchinitiative.org/ttl/go.ttl 12752 (+11679)
https://data.monarchinitiative.org/ttl/coriell.ttl 8639 (+51)
https://data.monarchinitiative.org/ttl/ncbigene.ttl 8024 (+7898)
https://data.monarchinitiative.org/ttl/flybase.ttl 4098 (+1667)
https://data.monarchinitiative.org/ttl/zfin.ttl 2903 (+336)
https://data.monarchinitiative.org/ttl/omia.ttl 2635 (0)
https://data.monarchinitiative.org/ttl/biogrid.ttl 957 (+957)
https://data.monarchinitiative.org/ttl/mgi_slim.ttl 781 (+24)
https://data.monarchinitiative.org/ttl/mmrrc.ttl 102 (+4)
Other 0 (0)

Publication Disease By Source

Production Query

Dev Query

source count
Total 664583 (+428035)
https://data.monarchinitiative.org/ttl/ncbigene.ttl 363963 (+363841)
https://data.monarchinitiative.org/ttl/ctd.ttl 90755 (-7747)
https://data.monarchinitiative.org/ttl/zfin.ttl 86558 (+17252)
https://data.monarchinitiative.org/ttl/go.ttl 68709 (+67477)
https://data.monarchinitiative.org/ttl/biogrid.ttl 55843 (+55843)
https://data.monarchinitiative.org/ttl/clinvar.nt 49230 (+49230)
https://data.monarchinitiative.org/ttl/wormbase.ttl 24884 (+24506)
https://data.monarchinitiative.org/ttl/mgi.ttl 14171 (+12047)
https://data.monarchinitiative.org/ttl/omia.ttl 13765 (0)
https://data.monarchinitiative.org/ttl/hgnc.ttl 4367 (+4366)
https://data.monarchinitiative.org/ttl/coriell.ttl 4235 (+418)
https://data.monarchinitiative.org/ttl/flybase.ttl 3857 (+1571)
https://data.monarchinitiative.org/ttl/gwascatalog.ttl 2316 (+184)
https://data.monarchinitiative.org/ttl/hpoa.ttl 1481 (+291)
https://data.monarchinitiative.org/ttl/mgi_slim.ttl 751 (+24)
https://data.monarchinitiative.org/ttl/monarch.ttl 184 (0)
https://data.monarchinitiative.org/ttl/mmrrc.ttl 102 (+2)
Other 0 (0)
https://data.monarchinitiative.org/ttl/clinvar.ttl 0 (-44539)

Gene Disease Causal Associations By Taxa

Production Query

Dev Query

species count
Total 10447 (+315)
Homo sapiens 9691 (+294)
Canis lupus familiaris 230 (0)
Bos taurus 120 (0)
Felis catus 62 (0)
Ovis aries 47 (0)
Gallus gallus 41 (0)
Equus caballus 39 (0)
Sus scrofa 38 (0)
Capra hircus 15 (0)
Mus musculus 12 (+1)
Oryctolagus cuniculus 12 (0)
Coturnix japonica 9 (0)
Human immunodeficiency virus 1 7 (+7)
Hepacivirus C 5 (+5)
Neovison vison 5 (0)
Equus asinus 5 (0)
Mesocricetus auratus 4 (0)
Bubalus bubalis 4 (0)
Bos grunniens 3 (0)
Macaca mulatta 3 (0)
NCBITaxon:198806 3 (0)
Oryzias latipes 3 (0)
Vulpes lagopus 3 (0)
Vaccinia virus WR 2 (+2)
NCBITaxon:32536 2 (0)
Macaca fascicularis 2 (0)
Meleagris gallopavo 2 (0)
Hepatitis C virus subtype 2a 2 (+2)
Mustela putorius furo 2 (0)
Vulpes vulpes 2 (0)
Mammuthus primigenius 2 (0)
Human alphaherpesvirus 1 2 (+2)
NCBITaxon:48883 2 (0)
NCBITaxon:1073377 2 (+2)
Peromyscus polionotus 1 (0)
Rattus norvegicus 1 (0)
NCBITaxon:68352 1 (0)
Dromaius novaehollandiae 1 (0)
Cavia porcellus 1 (0)
NCBITaxon:9690 1 (0)
Canis lupus 1 (0)
Panthera tigris tigris 1 (0)
Phoenicopterus ruber 1 (0)
NCBITaxon:61402 1 (0)
Oreochromis niloticus 1 (0)
Astyanax 1 (0)
Aepyceros melampus 1 (0)
NCBITaxon:8523 1 (0)
NCBITaxon:9691 1 (0)
Tursiops truncatus 1 (0)
NCBITaxon:120794 1 (0)
Symphalangus syndactylus 1 (0)
Peromyscus maniculatus 1 (0)
NCBITaxon:87177 1 (0)
Bos mutus 1 (0)
Anas platyrhynchos 1 (0)
NCBITaxon:61406 1 (0)
NCBITaxon:345164 1 (0)
Macaca fuscata 1 (0)
NCBITaxon:103584 1 (0)
NCBITaxon:70340 1 (0)
Jaagsiekte sheep retrovirus 1 (+1)
NCBITaxon:118797 1 (0)
NCBITaxon:43597 1 (0)
Cebus apella 1 (0)
NCBITaxon:328808 1 (0)
NCBITaxon:9579 1 (0)
Hylobates lar 1 (0)
Columba livia 1 (0)
Gorilla gorilla 1 (0)
Pan troglodytes 1 (0)
NCBITaxon:255217 1 (0)
NCBITaxon:34892 1 (0)
NCBITaxon:338458 1 (0)
Camelus dromedarius 1 (0)
Rangifer tarandus 1 (0)
NCBITaxon:57661 1 (0)
Coturnix coturnix 1 (0)
Ursus americanus 1 (0)
Canis latrans 1 (0)
Sus scrofa domesticus 1 (0)
NCBITaxon:37029 1 (0)
Elephas maximus 1 (0)
Numida meleagris 1 (0)
NCBITaxon:57662 1 (0)
NCBITaxon:61386 1 (0)
Balaenoptera acutorostrata 1 (0)
NCBITaxon:61455 1 (0)
Ctenopharyngodon idella 1 (0)
NCBITaxon:9773 1 (0)
NCBITaxon:46844 1 (0)
Takifugu rubripes 1 (0)
Delphinapterus leucas 1 (0)
Sciurus carolinensis 1 (0)
NCBITaxon:273489 1 (0)
NCBITaxon:54059 1 (0)
Panthera tigris 1 (0)
NCBITaxon:38666 1 (0)
Mus musculus domesticus 0 (-1)
Other 0 (0)

Gene Interactions By Subject Taxa

Production Query

Dev Query

source count
Total 3763633 (+113519)
Homo sapiens 1416080 (+81817)
Mus musculus 729803 (+4385)
Rattus norvegicus 484928 (-1)
Drosophila melanogaster 470895 (+889)
Caenorhabditis elegans 365031 (+23552)
Danio rerio 292821 (-122)
Human immunodeficiency virus 1 938 (+938)
Escherichia coli 530 (+530)
Vaccinia virus WR 370 (+370)
Hepacivirus C 361 (+361)
Hepatitis C virus subtype 2a 267 (+267)
HIV-1 M:C_ETH2220 235 (+235)
Dengue virus group 228 (+228)
Candida albicans 210 (+210)
NCBITaxon:1073377 147 (+147)
Acinetobacter baumannii 103 (+103)
Bacillus megaterium 101 (+101)
Staphylococcus aureus subsp. aureus 95 (+95)
Ebola virus 76 (+76)
Human adenovirus 5 59 (+59)
NCBITaxon:387139 57 (+57)
Human alphaherpesvirus 3 51 (+51)
NCBITaxon:70865 41 (+41)
Pseudomonas aeruginosa 30 (+30)
Escherichia coli ATCC 8739 29 (+29)
Other 27 (+1)
Enterococcus faecalis 26 (+26)
NCBITaxon:536056 25 (+25)
Jaagsiekte sheep retrovirus 22 (+22)
Murine leukemia virus 14 (+14)
Human alphaherpesvirus 1 14 (+14)
Salmonella 12 (+12)
Hepatitis B virus 7 (+7)
Mus musculus domesticus 0 (-1026)
organism 0 (-24)

Gene Disease Non-Causal Associations By Source

Production Query

Dev Query

species count
Total 18469 (+974)
https://data.monarchinitiative.org/ttl/gwascatalog.ttl 16668 (+16427)
https://data.monarchinitiative.org/ttl/orphanet.ttl 1188 (+5)
https://data.monarchinitiative.org/ttl/omim.ttl 774 (-8)
https://data.monarchinitiative.org/ttl/clinvar.nt 345 (+345)
https://data.monarchinitiative.org/ttl/coriell.ttl 41 (+6)
https://data.monarchinitiative.org/ttl/udp.ttl 2 (-2)
https://data.monarchinitiative.org/ttl/kegg.ttl 0 (-610)
https://data.monarchinitiative.org/ttl/clinvar.ttl 0 (-388)
https://data.monarchinitiative.org/ttl/ctd.ttl 0 (-15960)
Other 0 (0)

Publication Gene By Source

Production Query

Dev Query

source count
Total 5075193 (-1207655)
https://data.monarchinitiative.org/ttl/ncbigene.ttl 4172928 (+127892)
https://data.monarchinitiative.org/ttl/go.ttl 1038500 (+229170)
https://data.monarchinitiative.org/ttl/biogrid.ttl 338505 (+20734)
https://data.monarchinitiative.org/ttl/flybase.ttl 96829 (-1892315)
https://data.monarchinitiative.org/ttl/sgd.ttl 86732 (0)
https://data.monarchinitiative.org/ttl/zfin.ttl 70503 (+168)
https://data.monarchinitiative.org/ttl/gwascatalog.ttl 60984 (+60075)
https://data.monarchinitiative.org/ttl/mgi.ttl 57869 (+46699)
https://data.monarchinitiative.org/ttl/clinvar.nt 52824 (+52824)
https://data.monarchinitiative.org/ttl/wormbase.ttl 37087 (+8560)
https://data.monarchinitiative.org/ttl/mgi_slim.ttl 31983 (+273)
https://data.monarchinitiative.org/ttl/omim.ttl 28487 (+874)
https://data.monarchinitiative.org/ttl/hgnc.ttl 27638 (+16)
https://data.monarchinitiative.org/ttl/zfinslim.ttl 13191 (+600)
https://data.monarchinitiative.org/ttl/mmrrc.ttl 7505 (+5268)
https://data.monarchinitiative.org/ttl/impc.ttl 4630 (+4491)
https://data.monarchinitiative.org/ttl/animalqtldb.ttl 4613 (0)
https://data.monarchinitiative.org/ttl/rgd.ttl 184 (+11)
https://data.monarchinitiative.org/ttl/hpoa.ttl 4 (0)
https://data.monarchinitiative.org/ttl/ctd.ttl 0 (-23683)
https://data.monarchinitiative.org/ttl/clinvar.ttl 0 (-51789)
Other 0 (0)

Case Model By Source

Production Query

Dev Query

source count
https://data.monarchinitiative.org/ttl/coriell.ttl 29866 (+59)
Total 29866 (+59)
Other 0 (0)

Gene Interactions By Source

Production Query

Dev Query

source count
Total 3763633 (+113519)
https://data.monarchinitiative.org/ttl/string.ttl 2982366 (+2362)
https://data.monarchinitiative.org/ttl/biogrid.ttl 930333 (+153529)
Other 0 (0)

Genotype Phenotype Associations By Taxa

Production Query

Dev Query

species count
Total 560616 (-400496)
Mus musculus 358862 (+6016)
Danio rerio 107115 (+5186)
Homo sapiens 75564 (+1160)
organism 17500 (+449)
sequence_alteration 1520 (+1520)
Mus musculus molossinus 13 (0)
Mus musculus castaneus 12 (0)
NCBITaxon:477815 12 (0)
NCBITaxon:10102 8 (0)
Mus 4 (0)
Mus musculus musculus 3 (-11)
Mus spretus 2 (0)
Mus musculus bactrianus 1 (0)
Mus musculus domesticus 0 (-2540)
Drosophila melanogaster 0 (-412276)
Other 0 (0)

Variant Genotype Associations By Taxa

Production Query

Dev Query

species count
Total 826592 (-858977)
Mus musculus 652446 (+6495)
Danio rerio 161213 (+7851)
organism 7094 (-34)
Homo sapiens 4533 (+8)
sequence_alteration 1235 (+1235)
NCBITaxon:10102 20 (0)
Mus musculus molossinus 15 (0)
Mus musculus bactrianus 7 (0)
Mus spretus 6 (0)
Mus musculus musculus 5 (-6)
Rattus norvegicus 4 (0)
Mus musculus castaneus 4 (0)
Mus 4 (0)
Macaca mulatta 2 (0)
Cricetulus griseus 1 (0)
Bos taurus 1 (0)
Saguinus labiatus 1 (0)
Plecturocebus moloch 1 (0)
Mus musculus domesticus 0 (-1031)
Drosophila melanogaster 0 (-873495)
Other 0 (0)

Variant Disease Associations By Source

Production Query

Dev Query

source count
Total 113510 (+8877)
https://data.monarchinitiative.org/ttl/clinvar.nt 78238 (+78238)
https://data.monarchinitiative.org/ttl/gwascatalog.ttl 33026 (+4302)
https://data.monarchinitiative.org/ttl/coriell.ttl 1050 (+25)
https://data.monarchinitiative.org/ttl/omim.ttl 1016 (-20)
https://data.monarchinitiative.org/ttl/udp.ttl 110 (0)
https://data.monarchinitiative.org/ttl/hpoa.ttl 35 (+35)
https://data.monarchinitiative.org/ttl/mgi.ttl 30 (0)
https://data.monarchinitiative.org/ttl/mgi_slim.ttl 3 (0)
https://data.monarchinitiative.org/ttl/orphanet.ttl 3 (0)
https://data.monarchinitiative.org/ttl/impc.ttl 1 (0)
https://data.monarchinitiative.org/ttl/ctd.ttl 0 (-43)
https://data.monarchinitiative.org/ttl/clinvar.ttl 0 (-73667)
Other 0 (0)

Publication Variant By Source

Production Query

Dev Query

source count
Total 5410087 (-2741400)
https://data.monarchinitiative.org/ttl/ncbigene.ttl 4299396 (+130528)
https://data.monarchinitiative.org/ttl/animalqtldb.ttl 250257 (+785)
https://data.monarchinitiative.org/ttl/mgi.ttl 155924 (+155920)
https://data.monarchinitiative.org/ttl/clinvar.nt 155276 (+155276)
https://data.monarchinitiative.org/ttl/flybase.ttl 151798 (-3531815)
https://data.monarchinitiative.org/ttl/gwascatalog.ttl 115064 (+33102)
https://data.monarchinitiative.org/ttl/wormbase.ttl 107268 (+43753)
https://data.monarchinitiative.org/ttl/zfin.ttl 69249 (+1299)
https://data.monarchinitiative.org/ttl/omim.ttl 43518 (+694)
https://data.monarchinitiative.org/ttl/coriell.ttl 38373 (+260)
https://data.monarchinitiative.org/ttl/hgnc.ttl 32415 (+570)
https://data.monarchinitiative.org/ttl/go.ttl 29181 (+864)
https://data.monarchinitiative.org/ttl/mgi_slim.ttl 7609 (+59)
https://data.monarchinitiative.org/ttl/kegg.ttl 6194 (+147)
https://data.monarchinitiative.org/ttl/omia.ttl 5191 (0)
https://data.monarchinitiative.org/ttl/impc.ttl 4580 (+4580)
https://data.monarchinitiative.org/ttl/mmrrc.ttl 1606 (-19)
https://data.monarchinitiative.org/ttl/ctd.ttl 1147 (+1107)
https://data.monarchinitiative.org/ttl/biogrid.ttl 884 (+364)
https://data.monarchinitiative.org/ttl/hpoa.ttl 120 (+120)
https://data.monarchinitiative.org/ttl/sgd.ttl 29 (0)
https://data.monarchinitiative.org/ttl/clinvar.ttl 0 (-149825)
Other 0 (0)

Disease Phenotype Associations By Source

Production Query

Dev Query

species count
Total 156644 (+10624)
https://data.monarchinitiative.org/ttl/hpoa.ttl 154601 (+10659)
https://data.monarchinitiative.org/ttl/monarch.ttl 1768 (-36)
https://data.monarchinitiative.org/ttl/omia.ttl 221 (0)
https://data.monarchinitiative.org/ttl/omim.ttl 2 (+2)
Other 0 (0)

Relations

Production Query

Dev Query

relation count
Total 36884140 (-5556234)
is_about 8843448 (+681820)
has phenotype 4700645 (-443205)
interacts with 3672504 (+48620)
in paralogy relationship with 2927459 (+140529)
Source 2768939 (+174677)
in 1 to 1 orthology relationship with 2552324 (+562714)
Other 2534997 (-2356517)
in orthology relationship with 2103929 (+392501)
expressed in 1848540 (-9931)
involved_in 1217348 (+113593)
is_allele_of 853064 (-168628)
is part of 470272 (+113457)
enables 416744 (+98074)
has_affected_feature 406471 (+248719)
has_genotype 404688 (-343123)
in xenology relationship with 289217 (-4016)
contributes to condition 196430 (+165360)
is marker for 124414 (-15625)
mentions 105117 (-4585576)
targets_gene 66681 (-108812)
is_expression_variant_of 64214 (-107054)
colocalizes with 60453 (-22803)
pathogenic_for_condition 58885 (+3588)
is_reference_allele_of 58315 (+178)
is model of 38665 (+928)
genetically interacts with 30676 (+4446)
derives_from 29866 (+59)
likely_pathogenic_for_condition 19693 (+1019)
causes condition 10608 (-226)
sequence_derives_from 8557 (-141571)
contributes to 462 (+111)
is causal susceptibility factor for 459 (+459)
disease has basis in feature 54 (+1)
is_variant_allele_of 2 (0)

Publication Genotype By Source

Production Query

Dev Query

source count
Total 127930 (-201093)
https://data.monarchinitiative.org/ttl/mgi.ttl 79480 (+79480)
https://data.monarchinitiative.org/ttl/zfin.ttl 28888 (-17)
https://data.monarchinitiative.org/ttl/coriell.ttl 10395 (+95)
https://data.monarchinitiative.org/ttl/go.ttl 9167 (+157)
Other 0 (0)
https://data.monarchinitiative.org/ttl/flybase.ttl 0 (-280808)

Gene Phenotype Associations By Source

Production Query

Dev Query

source count
Total 675079 (-47634)
https://data.monarchinitiative.org/ttl/mgi_slim.ttl 209430 (+3660)
https://data.monarchinitiative.org/ttl/hpoa.ttl 148647 (+17693)
https://data.monarchinitiative.org/ttl/orphanet.ttl 111894 (+14108)
https://data.monarchinitiative.org/ttl/clinvar.nt 96592 (+96592)
https://data.monarchinitiative.org/ttl/omim.ttl 86440 (+7846)
https://data.monarchinitiative.org/ttl/wormbase.ttl 76781 (+23064)
https://data.monarchinitiative.org/ttl/sgd.ttl 68224 (0)
https://data.monarchinitiative.org/ttl/zfinslim.ttl 61892 (+8458)
https://data.monarchinitiative.org/ttl/flybase.ttl 57210 (-138865)
https://data.monarchinitiative.org/ttl/gwascatalog.ttl 48682 (+48677)
https://data.monarchinitiative.org/ttl/impc.ttl 17417 (0)
https://data.monarchinitiative.org/ttl/mgi.ttl 16087 (0)
https://data.monarchinitiative.org/ttl/coriell.ttl 7151 (+286)
https://data.monarchinitiative.org/ttl/mmrrc.ttl 5164 (+50)
https://data.monarchinitiative.org/ttl/omia.ttl 981 (-28)
https://data.monarchinitiative.org/ttl/monarch.ttl 960 (-28)
https://data.monarchinitiative.org/ttl/rgd.ttl 489 (+33)
https://data.monarchinitiative.org/ttl/go.ttl 0 (-9775)
https://data.monarchinitiative.org/ttl/clinvar.ttl 0 (-89034)
https://data.monarchinitiative.org/ttl/zfin.ttl 0 (-8943)
Other 0 (0)

Gene Disease Non-causal Associations By Taxa

Production Query

Dev Query

species count
Total 18469 (+974)
Homo sapiens 18425 (+1247)
Hepacivirus C 27 (+27)
Human immunodeficiency virus 1 8 (+8)
Candida albicans 2 (+2)
HIV-1 M:C_ETH2220 2 (+2)
NCBITaxon:1073377 2 (+2)
Hepatitis C virus subtype 2a 1 (+1)
Human alphaherpesvirus 3 1 (+1)
Bacillus megaterium 1 (+1)
Danio rerio 0 (-24)
Sus scrofa 0 (-5)
Bos taurus 0 (-4)
Mus musculus domesticus 0 (-5)
Rattus norvegicus 0 (-32)
Mus musculus 0 (-205)
Canis lupus familiaris 0 (-1)
Caenorhabditis elegans 0 (-4)
Gallus gallus 0 (-2)
Drosophila melanogaster 0 (-34)
Xenopus (Silurana) tropicalis 0 (-1)
Other 0 (0)

Variant Phenotype Associations By Source

Production Query

Dev Query

source count
Total 3573953 (+62712)
https://data.monarchinitiative.org/ttl/hpoa.ttl 2039191 (+150717)
https://data.monarchinitiative.org/ttl/clinvar.nt 1954732 (+1954732)
https://data.monarchinitiative.org/ttl/mgi.ttl 735504 (-3051)
https://data.monarchinitiative.org/ttl/animalqtldb.ttl 213937 (+225)
https://data.monarchinitiative.org/ttl/wormbase.ttl 192960 (+72933)
https://data.monarchinitiative.org/ttl/gwascatalog.ttl 168685 (+103412)
https://data.monarchinitiative.org/ttl/zfin.ttl 164385 (+24172)
https://data.monarchinitiative.org/ttl/flybase.ttl 116655 (-252958)
https://data.monarchinitiative.org/ttl/impc.ttl 58252 (+242)
https://data.monarchinitiative.org/ttl/mgi_slim.ttl 33585 (+487)
https://data.monarchinitiative.org/ttl/omim.ttl 8264 (+218)
https://data.monarchinitiative.org/ttl/sgd.ttl 23 (0)
https://data.monarchinitiative.org/ttl/orphanet.ttl 23 (0)
https://data.monarchinitiative.org/ttl/coriell.ttl 3 (0)
https://data.monarchinitiative.org/ttl/ctd.ttl 0 (-560)
Other 0 (0)
https://data.monarchinitiative.org/ttl/go.ttl 0 (-50354)
https://data.monarchinitiative.org/ttl/clinvar.ttl 0 (-1816735)

Pathway Phenotype By Source

Production Query

Dev Query

source count
https://data.monarchinitiative.org/ttl/reactome.ttl 33007 (-878)
Total 33007 (-62695)
https://data.monarchinitiative.org/ttl/coriell.ttl 26449 (-59761)
https://data.monarchinitiative.org/ttl/hpoa.ttl 26449 (-59761)
https://data.monarchinitiative.org/ttl/omim.ttl 26409 (-59801)
https://data.monarchinitiative.org/ttl/animalqtldb.ttl 6558 (-2934)
https://data.monarchinitiative.org/ttl/gwascatalog.ttl 2236 (+2236)
https://data.monarchinitiative.org/ttl/orphanet.ttl 204 (-212)
https://data.monarchinitiative.org/ttl/ctd.ttl 0 (-84168)
Other 0 (0)

Case Phenotype By Source

Production Query

Dev Query

source count
Total 1085 (0)
https://data.monarchinitiative.org/ttl/udp.ttl 1076 (0)
https://data.monarchinitiative.org/ttl/coriell.ttl 9 (0)
Other 0 (0)

Gene Pathway By Source

Production Query

Dev Query

source count
https://data.monarchinitiative.org/ttl/reactome.ttl 204026 (-9995)
Total 204026 (-112647)
https://data.monarchinitiative.org/ttl/ctd.ttl 0 (-135667)
Other 0 (0)
https://data.monarchinitiative.org/ttl/ensembl.ttl 0 (-695)

Publication Phenotype By Source

Production Query

Dev Query

source count
Total 5075193 (-1207655)
https://data.monarchinitiative.org/ttl/ncbigene.ttl 4172928 (+127892)
https://data.monarchinitiative.org/ttl/go.ttl 1038500 (+229170)
https://data.monarchinitiative.org/ttl/biogrid.ttl 338505 (+20734)
https://data.monarchinitiative.org/ttl/flybase.ttl 96829 (-1892315)
https://data.monarchinitiative.org/ttl/sgd.ttl 86732 (0)
https://data.monarchinitiative.org/ttl/zfin.ttl 70503 (+168)
https://data.monarchinitiative.org/ttl/gwascatalog.ttl 60984 (+60075)
https://data.monarchinitiative.org/ttl/mgi.ttl 57869 (+46699)
https://data.monarchinitiative.org/ttl/clinvar.nt 52824 (+52824)
https://data.monarchinitiative.org/ttl/wormbase.ttl 37087 (+8560)
https://data.monarchinitiative.org/ttl/mgi_slim.ttl 31983 (+273)
https://data.monarchinitiative.org/ttl/omim.ttl 28487 (+874)
https://data.monarchinitiative.org/ttl/hgnc.ttl 27638 (+16)
https://data.monarchinitiative.org/ttl/zfinslim.ttl 13191 (+600)
https://data.monarchinitiative.org/ttl/mmrrc.ttl 7505 (+5268)
https://data.monarchinitiative.org/ttl/impc.ttl 4630 (+4491)
https://data.monarchinitiative.org/ttl/animalqtldb.ttl 4613 (0)
https://data.monarchinitiative.org/ttl/rgd.ttl 184 (+11)
https://data.monarchinitiative.org/ttl/hpoa.ttl 4 (0)
https://data.monarchinitiative.org/ttl/ctd.ttl 0 (-23683)
https://data.monarchinitiative.org/ttl/clinvar.ttl 0 (-51789)
Other 0 (0)

Gene Function By Taxa

Production Query

Dev Query

source count
Total 1893759 (+431192)
Mus musculus 341851 (+5702)
Homo sapiens 314791 (+1270)
Rattus norvegicus 294395 (+3348)
Danio rerio 171877 (-3436)
Sus scrofa 137574 (+116059)
Gallus gallus 123144 (+106974)
Bos taurus 121784 (+100664)
Canis lupus familiaris 116201 (+96039)
Caenorhabditis elegans 101391 (+5353)
Drosophila melanogaster 100344 (+602)
Saccharomyces cerevisiae S288C 68899 (+168)
Human immunodeficiency virus 1 446 (+446)
Hepacivirus C 170 (+170)
HIV-1 M:C_ETH2220 128 (+128)
Escherichia coli 85 (+85)
Candida albicans 78 (+78)
Jaagsiekte sheep retrovirus 68 (+68)
Ebola virus 61 (+61)
Hepatitis C virus subtype 2a 46 (+46)
NCBITaxon:1073377 42 (+42)
Staphylococcus aureus subsp. aureus 40 (+40)
Vaccinia virus WR 39 (+39)
Hepatitis B virus 36 (+36)
Dengue virus group 36 (+36)
NCBITaxon:387139 29 (+29)
NCBITaxon:70865 24 (+24)
Human alphaherpesvirus 1 23 (+23)
Escherichia coli ATCC 8739 21 (+21)
Acinetobacter baumannii 20 (+20)
Bacillus megaterium 19 (+19)
Salmonella 19 (+19)
Enterococcus faecalis 18 (+18)
Human alphaherpesvirus 3 17 (+17)
Murine leukemia virus 16 (+16)
Human adenovirus 5 11 (+11)
Pseudomonas aeruginosa 9 (+9)
NCBITaxon:536056 7 (+7)
Mus musculus domesticus 0 (-2181)
Other 0 (0)
organism 0 (-878)

Case Genotype By Source

Production Query

Dev Query

source count
Total 3840 (+17)
https://data.monarchinitiative.org/ttl/coriell.ttl 3807 (+17)
https://data.monarchinitiative.org/ttl/udp.ttl 33 (0)
Other 0 (0)

SciGraph Queries

Gene Disease Mix-ups

Production Query

Dev Query

field count
gene 21474 (+21474)

Variant Loci

Production Query

Dev Query

field count
variants 851721 (-15369)

Disease Phenotype Mix-ups

Production Query

Dev Query

field count
disease 131 (+3)

Genes in more than one taxa

Production Query

Dev Query

field count
request timeout 0

Reagent Targeted Gene

Production Query

Dev Query

field count
rtg 106222 (-138446)

Sequence Features

Production Query

Dev Query

field count
features 7402507 (-1855002)

Genes

Production Query

Dev Query

field count
genes 1832840 (-667018)

Gene Variant Mix-ups

Production Query

Dev Query

field count
variant 5179 (-5)

Genotypes

Production Query

Dev Query

field count
genotypes 335901 (-441910)

nodes with subClassOf cycles (depth 2)

Production Query

Dev Query

field count
node_count 2 (+1)

nodes with subClassOf cycles (depth 1)

Production Query

Dev Query

field count
node_count 127 (+126)

Number of edges connected to owl:Nothing

Production Query

Dev Query

field count
nothing 0 (0)