Solr Queries

Gene Anatomy By Taxa

Production Query

Dev Query

source count
Total 1862905 (+4434)
Mus musculus 550723 (+120737)
Homo sapiens 532420 (+4410)
Danio rerio 367207 (-20)
Drosophila melanogaster 197522 (-219)
Rattus norvegicus 142624 (0)
Caenorhabditis elegans 71613 (-95)
Hepacivirus C 80 (+80)
Human immunodeficiency virus 1 80 (+80)
Hepatitis C virus subtype 2a 60 (+60)
Candida albicans 60 (+60)
Jaagsiekte sheep retrovirus 40 (+40)
Pseudomonas aeruginosa 35 (+35)
Staphylococcus aureus subsp. aureus 20 (+20)
NCBITaxon:1392869 20 (+20)
NCBITaxon:176281 20 (+20)
Bacillus megaterium 20 (+20)
NCBITaxon:528354 20 (+20)
HIV-1 M:C_ETH2220 20 (+20)
Human alphaherpesvirus 1 20 (+20)
Pseudomonas aeruginosa PAO1 20 (+20)
Vaccinia virus WR 20 (+20)
Leishmania major 20 (+20)
Escherichia coli 20 (+20)
Micrococcus luteus 20 (+20)
NCBITaxon:536056 20 (+20)
Salmonella enterica subsp. enterica serovar Typhi 20 (+20)
Dengue virus group 20 (+20)
Human betaherpesvirus 5 20 (+20)
HIV-1 M:B_HXB2R 20 (+20)
Enterococcus faecalis 20 (+20)
Simian virus 40 20 (+20)
NCBITaxon:387139 20 (+20)
Influenzavirus A 20 (+20)
NCBITaxon:70865 13 (+13)
Streptococcus pneumoniae 8 (+8)
Other 0 (0)
Mus musculus domesticus 0 (-121175)

Variant Phenotype Associations By Taxa

Production Query

Dev Query

species count
Total 3574238 (+62997)
Homo sapiens 2134074 (+248158)
organism 446655 (-184838)
Mus musculus 413239 (+57967)
Caenorhabditis elegans 193000 (+101939)
Bos taurus 125205 (+7)
Drosophila melanogaster 111499 (-99292)
Danio rerio 93521 (+1466)
Sus scrofa 34559 (0)
Gallus gallus 13529 (+190)
Ovis aries 1519 (+26)
sequence_alteration 1305 (+1305)
Equus caballus 1009 (+2)
Drosophila hydei 644 (+644)
Drosophila subobscura 596 (+596)
Drosophila virilis 592 (+592)
Drosophila ananassae 398 (+398)
Drosophila pseudoobscura pseudoobscura 321 (+321)
Drosophila simulans 279 (+279)
Drosophila willistoni 251 (+251)
Drosophila funebris 228 (+228)
NCBITaxon:40372 206 (+206)
NCBITaxon:7257 156 (+156)
NCBITaxon:30019 142 (+142)
Drosophila immigrans 108 (+108)
NCBITaxon:95109 100 (+100)
NCBITaxon:30033 95 (+95)
NCBITaxon:7246 76 (+76)
Drosophila mauritiana 76 (+76)
NCBITaxon:7300 71 (+71)
NCBITaxon:30042 68 (+68)
Drosophila buzzatii 67 (+67)
Drosophila miranda 65 (+65)
Drosophila paulistorum 60 (+60)
NCBITaxon:76712 52 (+52)
Drosophila littoralis 45 (+45)
Drosophila persimilis 39 (+39)
NCBITaxon:7218 35 (+35)
Drosophila mojavensis 34 (+34)
Drosophila ambigua 28 (+28)
Saccharomyces cerevisiae S288C 23 (0)
NCBITaxon:193351 22 (+22)
NCBITaxon:125945 18 (+18)
Drosophila auraria 18 (+18)
NCBITaxon:7282 14 (+14)
NCBITaxon:7283 13 (+13)
NCBITaxon:64960 11 (+11)
NCBITaxon:42026 10 (+10)
NCBITaxon:46794 10 (+10)
Drosophila sechellia 9 (+9)
NCBITaxon:30036 9 (+9)
NCBITaxon:161732 9 (+9)
Drosophila takahashii 8 (+8)
NCBITaxon:30043 7 (+7)
NCBITaxon:169138 7 (+7)
NCBITaxon:47314 7 (+7)
NCBITaxon:94111 6 (+6)
NCBITaxon:7291 5 (+5)
NCBITaxon:30023 4 (+4)
NCBITaxon:69217 4 (+4)
Drosophila eugracilis 4 (+4)
NCBITaxon:40844 4 (+4)
NCBITaxon:46822 4 (+4)
NCBITaxon:30028 4 (+4)
NCBITaxon:218680 3 (+3)
NCBITaxon:103846 3 (+3)
Drosophila equinoxialis 3 (+3)
NCBITaxon:7252 3 (+3)
Drosophila pseudoobscura bogotana 3 (+3)
NCBITaxon:198721 3 (+3)
Drosophila yakuba 2 (+2)
NCBITaxon:133978 2 (+2)
Drosophila madeirensis 2 (+2)
NCBITaxon:141217 2 (+2)
NCBITaxon:7297 2 (+2)
NCBITaxon:195057 2 (+2)
NCBITaxon:133981 2 (+2)
NCBITaxon:57910 2 (+2)
NCBITaxon:76946 2 (+2)
Scaptodrosophila lebanonensis 2 (+2)
NCBITaxon:7279 2 (+2)
NCBITaxon:30056 2 (+2)
NCBITaxon:7271 2 (+2)
Drosophila erecta 2 (+2)
NCBITaxon:7270 2 (+2)
Drosophila arizonae 2 (+2)
NCBITaxon:42062 2 (+2)
NCBITaxon:30029 2 (+2)
NCBITaxon:134002 2 (+2)
NCBITaxon:66368 1 (+1)
NCBITaxon:310057 1 (+1)
Drosophila lutescens 1 (+1)
NCBITaxon:7231 1 (+1)
NCBITaxon:7284 1 (+1)
Other 1 (-182)
Mus musculus domesticus 0 (-68851)

Publication Model By Source

Production Query

Dev Query

source count
Total 48769 (+30291)
https://data.monarchinitiative.org/ttl/wormbase.ttl 15529 (+15278)
https://data.monarchinitiative.org/ttl/mgi.ttl 14965 (+12959)
https://data.monarchinitiative.org/ttl/go.ttl 12752 (+11679)
https://data.monarchinitiative.org/ttl/coriell.ttl 8639 (+51)
https://data.monarchinitiative.org/ttl/ncbigene.ttl 8024 (+7898)
https://data.monarchinitiative.org/ttl/flybase.ttl 4098 (+1667)
https://data.monarchinitiative.org/ttl/zfin.ttl 2903 (+336)
https://data.monarchinitiative.org/ttl/omia.ttl 2635 (0)
https://data.monarchinitiative.org/ttl/biogrid.ttl 957 (+957)
https://data.monarchinitiative.org/ttl/mgi_slim.ttl 781 (+24)
https://data.monarchinitiative.org/ttl/mmrrc.ttl 102 (+4)
https://data.monarchinitiative.org/ttl/ctd.ttl 3 (+3)
Other 0 (0)

Variant Genotype Associations By Taxa

Production Query

Dev Query

species count
Total 826592 (-858977)
Mus musculus 652446 (+6495)
Danio rerio 161213 (+7851)
organism 7094 (-34)
Homo sapiens 4533 (+8)
sequence_alteration 1235 (+1235)
NCBITaxon:10102 20 (0)
Mus musculus molossinus 15 (0)
Mus musculus bactrianus 7 (0)
Mus spretus 6 (0)
Mus musculus musculus 5 (-6)
Mus 4 (0)
Mus musculus castaneus 4 (0)
Rattus norvegicus 4 (0)
Macaca mulatta 2 (0)
Bos taurus 1 (0)
Cricetulus griseus 1 (0)
Plecturocebus moloch 1 (0)
Saguinus labiatus 1 (0)
Drosophila melanogaster 0 (-873495)
Other 0 (0)
Mus musculus domesticus 0 (-1031)

Case Model By Source

Production Query

Dev Query

source count
https://data.monarchinitiative.org/ttl/coriell.ttl 29866 (+59)
Total 29866 (+59)
Other 0 (0)

Variant Phenotype Associations By Source

Production Query

Dev Query

source count
Total 3574238 (+62997)
https://data.monarchinitiative.org/ttl/hpoa.ttl 2039432 (+150958)
https://data.monarchinitiative.org/ttl/clinvar.nt 1954732 (+1954732)
https://data.monarchinitiative.org/ttl/mgi.ttl 735465 (-3090)
https://data.monarchinitiative.org/ttl/animalqtldb.ttl 213937 (+225)
https://data.monarchinitiative.org/ttl/wormbase.ttl 193000 (+72973)
https://data.monarchinitiative.org/ttl/gwascatalog.ttl 168685 (+103412)
https://data.monarchinitiative.org/ttl/zfin.ttl 164429 (+24216)
https://data.monarchinitiative.org/ttl/flybase.ttl 116655 (-252958)
https://data.monarchinitiative.org/ttl/impc.ttl 58252 (+242)
https://data.monarchinitiative.org/ttl/mgi_slim.ttl 33584 (+486)
https://data.monarchinitiative.org/ttl/omim.ttl 8264 (+218)
https://data.monarchinitiative.org/ttl/ctd.ttl 560 (0)
https://data.monarchinitiative.org/ttl/orphanet.ttl 23 (0)
https://data.monarchinitiative.org/ttl/sgd.ttl 23 (0)
https://data.monarchinitiative.org/ttl/coriell.ttl 3 (0)
Other 0 (0)
https://data.monarchinitiative.org/ttl/go.ttl 0 (-50354)
https://data.monarchinitiative.org/ttl/clinvar.ttl 0 (-1816735)

Publication Variant By Source

Production Query

Dev Query

source count
Total 5410296 (-2741191)
https://data.monarchinitiative.org/ttl/ncbigene.ttl 4299396 (+130528)
https://data.monarchinitiative.org/ttl/animalqtldb.ttl 250257 (+785)
https://data.monarchinitiative.org/ttl/mgi.ttl 155924 (+155920)
https://data.monarchinitiative.org/ttl/clinvar.nt 155276 (+155276)
https://data.monarchinitiative.org/ttl/flybase.ttl 151798 (-3531815)
https://data.monarchinitiative.org/ttl/gwascatalog.ttl 115064 (+33102)
https://data.monarchinitiative.org/ttl/wormbase.ttl 107268 (+43753)
https://data.monarchinitiative.org/ttl/zfin.ttl 69249 (+1299)
https://data.monarchinitiative.org/ttl/omim.ttl 43518 (+694)
https://data.monarchinitiative.org/ttl/coriell.ttl 38373 (+260)
https://data.monarchinitiative.org/ttl/hgnc.ttl 32415 (+570)
https://data.monarchinitiative.org/ttl/go.ttl 29181 (+864)
https://data.monarchinitiative.org/ttl/mgi_slim.ttl 7609 (+59)
https://data.monarchinitiative.org/ttl/kegg.ttl 6192 (+145)
https://data.monarchinitiative.org/ttl/omia.ttl 5191 (0)
https://data.monarchinitiative.org/ttl/impc.ttl 4580 (+4580)
https://data.monarchinitiative.org/ttl/mmrrc.ttl 1606 (-19)
https://data.monarchinitiative.org/ttl/ctd.ttl 1399 (+1359)
https://data.monarchinitiative.org/ttl/biogrid.ttl 555 (+35)
https://data.monarchinitiative.org/ttl/hpoa.ttl 120 (+120)
https://data.monarchinitiative.org/ttl/sgd.ttl 29 (0)
https://data.monarchinitiative.org/ttl/clinvar.ttl 0 (-149825)
Other 0 (0)

Publication Gene By Source

Production Query

Dev Query

source count
Total 5096399 (-1186449)
https://data.monarchinitiative.org/ttl/ncbigene.ttl 4175822 (+130786)
https://data.monarchinitiative.org/ttl/go.ttl 1038500 (+229170)
https://data.monarchinitiative.org/ttl/biogrid.ttl 338834 (+21063)
https://data.monarchinitiative.org/ttl/flybase.ttl 96829 (-1892315)
https://data.monarchinitiative.org/ttl/sgd.ttl 86732 (0)
https://data.monarchinitiative.org/ttl/zfin.ttl 70503 (+168)
https://data.monarchinitiative.org/ttl/gwascatalog.ttl 61356 (+60447)
https://data.monarchinitiative.org/ttl/mgi.ttl 57869 (+46699)
https://data.monarchinitiative.org/ttl/clinvar.nt 52824 (+52824)
https://data.monarchinitiative.org/ttl/wormbase.ttl 37087 (+8560)
https://data.monarchinitiative.org/ttl/mgi_slim.ttl 31983 (+273)
https://data.monarchinitiative.org/ttl/omim.ttl 28487 (+874)
https://data.monarchinitiative.org/ttl/hgnc.ttl 28025 (+403)
https://data.monarchinitiative.org/ttl/ctd.ttl 24111 (+428)
https://data.monarchinitiative.org/ttl/zfinslim.ttl 13191 (+600)
https://data.monarchinitiative.org/ttl/mmrrc.ttl 7505 (+5268)
https://data.monarchinitiative.org/ttl/impc.ttl 4630 (+4491)
https://data.monarchinitiative.org/ttl/animalqtldb.ttl 4613 (0)
https://data.monarchinitiative.org/ttl/rgd.ttl 184 (+11)
https://data.monarchinitiative.org/ttl/hpoa.ttl 4 (0)
https://data.monarchinitiative.org/ttl/clinvar.ttl 0 (-51789)
Other 0 (0)

Gene Phenotype Associations By Taxa

Production Query

Dev Query

species count
Total 675395 (-47318)
Mus musculus 212671 (+10833)
Homo sapiens 196707 (+65733)
Caenorhabditis elegans 76789 (+22926)
Saccharomyces cerevisiae S288C 68224 (-6)
Danio rerio 56008 (-661)
Drosophila melanogaster 49114 (-146961)
organism 10484 (+4425)
Rattus norvegicus 494 (+33)
Canis lupus familiaris 460 (-16)
Drosophila hydei 452 (+452)
Drosophila subobscura 373 (+373)
Drosophila virilis 337 (+337)
Drosophila ananassae 246 (+246)
Drosophila simulans 204 (+204)
Drosophila pseudoobscura pseudoobscura 203 (+203)
Drosophila willistoni 186 (+186)
Bos taurus 160 (-3)
NCBITaxon:7257 153 (+153)
Drosophila funebris 132 (+132)
Vaccinia virus WR 131 (+131)
Felis catus 128 (-4)
NCBITaxon:30019 124 (+124)
NCBITaxon:40372 118 (+118)
NCBITaxon:30033 82 (+82)
NCBITaxon:95109 82 (+82)
Hepatitis C virus subtype 2a 74 (+74)
Drosophila immigrans 72 (+72)
NCBITaxon:7300 69 (+69)
NCBITaxon:7246 63 (+63)
Human alphaherpesvirus 1 61 (+61)
NCBITaxon:30042 56 (+56)
Ovis aries 55 (-2)
Drosophila buzzatii 55 (+55)
Drosophila mauritiana 52 (+52)
Drosophila paulistorum 49 (+49)
Candida albicans 49 (+49)
Drosophila miranda 43 (+43)
Drosophila littoralis 34 (+34)
Hepacivirus C 34 (+34)
NCBITaxon:7218 33 (+33)
Equus caballus 31 (0)
Pseudomonas aeruginosa PAO1 30 (+30)
Sus scrofa 30 (-1)
Drosophila ambigua 27 (+27)
NCBITaxon:193351 22 (+22)
Gallus gallus 19 (0)
Micrococcus luteus 18 (+18)
Capra hircus 17 (-1)
Phoenicopterus ruber 17 (0)
NCBITaxon:125945 15 (+15)
Human betaherpesvirus 5 15 (+15)
NCBITaxon:76712 14 (+14)
Drosophila persimilis 14 (+14)
NCBITaxon:7283 13 (+13)
NCBITaxon:7282 13 (+13)
Drosophila mojavensis 12 (+12)
Drosophila auraria 11 (+11)
NCBITaxon:64960 11 (+11)
NCBITaxon:46794 10 (+10)
Mustela putorius furo 10 (0)
Oryctolagus cuniculus 10 (0)
Drosophila sechellia 9 (+9)
NCBITaxon:30043 7 (+7)
NCBITaxon:169138 7 (+7)
NCBITaxon:42026 6 (+6)
NCBITaxon:161732 6 (+6)
NCBITaxon:47314 6 (+6)
Neovison vison 4 (0)
NCBITaxon:69217 4 (+4)
NCBITaxon:40844 4 (+4)
NCBITaxon:46822 4 (+4)
NCBITaxon:30028 4 (+4)
Macaca mulatta 4 (0)
NCBITaxon:94111 3 (+3)
NCBITaxon:198721 3 (+3)
NCBITaxon:218680 3 (+3)
Mesocricetus auratus 3 (0)
NCBITaxon:30036 3 (+3)
Meleagris gallopavo 3 (0)
Drosophila equinoxialis 3 (+3)
Drosophila takahashii 3 (+3)
Oryzias latipes 3 (-1)
NCBITaxon:7252 3 (+3)
Drosophila pseudoobscura bogotana 3 (+3)
NCBITaxon:30029 2 (+2)
NCBITaxon:30023 2 (+2)
Vulpes vulpes 2 (0)
NCBITaxon:133978 2 (+2)
Drosophila madeirensis 2 (+2)
Drosophila arizonae 2 (+2)
NCBITaxon:141217 2 (+2)
NCBITaxon:195057 2 (+2)
Bubalus bubalis 2 (0)
NCBITaxon:42062 2 (+2)
NCBITaxon:76946 2 (+2)
Scaptodrosophila lebanonensis 2 (+2)
NCBITaxon:7271 2 (+2)
Drosophila eugracilis 2 (+2)
Escherichia coli 2 (+2)
Drosophila erecta 2 (+2)
NCBITaxon:7270 2 (+2)
NCBITaxon:133981 2 (+2)
NCBITaxon:7291 2 (+2)
NCBITaxon:134002 2 (+2)
Ursus americanus 1 (0)
NCBITaxon:528354 1 (+1)
NCBITaxon:32536 1 (0)
Drosophila yakuba 1 (+1)
NCBITaxon:66368 1 (+1)
Sciurus carolinensis 1 (0)
Human immunodeficiency virus 1 1 (+1)
HIV-1 M:B_HXB2R 1 (+1)
NCBITaxon:7297 1 (+1)
NCBITaxon:1392869 1 (+1)
NCBITaxon:176281 1 (+1)
NCBITaxon:57910 1 (+1)
Peromyscus polionotus 1 (0)
Influenzavirus A 1 (+1)
Panthera tigris tigris 1 (0)
NCBITaxon:30056 1 (+1)
NCBITaxon:310057 1 (+1)
Bos grunniens 1 (0)
Vulpes lagopus 1 (0)
NCBITaxon:68352 1 (0)
NCBITaxon:7279 1 (+1)
NCBITaxon:38666 1 (0)
NCBITaxon:9690 1 (0)
Drosophila lutescens 1 (+1)
NCBITaxon:7231 1 (+1)
NCBITaxon:70340 1 (0)
NCBITaxon:61402 1 (0)
NCBITaxon:43597 1 (0)
NCBITaxon:103846 1 (+1)
Numida meleagris 1 (0)
Leishmania major 1 (+1)
NCBITaxon:7284 1 (+1)
NCBITaxon:87177 1 (0)
Salmonella enterica subsp. enterica serovar Typhi 1 (+1)
Mammuthus primigenius 1 (0)
NCBITaxon:27706 1 (0)
Coturnix japonica 1 (0)
Other 0 (0)
Mus musculus domesticus 0 (-7540)

Publication Phenotype By Source

Production Query

Dev Query

source count
Total 5096399 (-1186449)
https://data.monarchinitiative.org/ttl/ncbigene.ttl 4175822 (+130786)
https://data.monarchinitiative.org/ttl/go.ttl 1038500 (+229170)
https://data.monarchinitiative.org/ttl/biogrid.ttl 338834 (+21063)
https://data.monarchinitiative.org/ttl/flybase.ttl 96829 (-1892315)
https://data.monarchinitiative.org/ttl/sgd.ttl 86732 (0)
https://data.monarchinitiative.org/ttl/zfin.ttl 70503 (+168)
https://data.monarchinitiative.org/ttl/gwascatalog.ttl 61356 (+60447)
https://data.monarchinitiative.org/ttl/mgi.ttl 57869 (+46699)
https://data.monarchinitiative.org/ttl/clinvar.nt 52824 (+52824)
https://data.monarchinitiative.org/ttl/wormbase.ttl 37087 (+8560)
https://data.monarchinitiative.org/ttl/mgi_slim.ttl 31983 (+273)
https://data.monarchinitiative.org/ttl/omim.ttl 28487 (+874)
https://data.monarchinitiative.org/ttl/hgnc.ttl 28025 (+403)
https://data.monarchinitiative.org/ttl/ctd.ttl 24111 (+428)
https://data.monarchinitiative.org/ttl/zfinslim.ttl 13191 (+600)
https://data.monarchinitiative.org/ttl/mmrrc.ttl 7505 (+5268)
https://data.monarchinitiative.org/ttl/impc.ttl 4630 (+4491)
https://data.monarchinitiative.org/ttl/animalqtldb.ttl 4613 (0)
https://data.monarchinitiative.org/ttl/rgd.ttl 184 (+11)
https://data.monarchinitiative.org/ttl/hpoa.ttl 4 (0)
https://data.monarchinitiative.org/ttl/clinvar.ttl 0 (-51789)
Other 0 (0)

Gene Variant Associations By Source

Production Query

Dev Query

source count
Total 1457685 (-276787)
https://data.monarchinitiative.org/ttl/mgi.ttl 839376 (+976)
https://data.monarchinitiative.org/ttl/flybase.ttl 192674 (-336480)
https://data.monarchinitiative.org/ttl/clinvar.nt 129318 (+129318)
https://data.monarchinitiative.org/ttl/wormbase.ttl 116276 (+305)
https://data.monarchinitiative.org/ttl/gwascatalog.ttl 61601 (+61601)
https://data.monarchinitiative.org/ttl/mmrrc.ttl 48904 (+1456)
https://data.monarchinitiative.org/ttl/zfin.ttl 41213 (+1452)
https://data.monarchinitiative.org/ttl/omim.ttl 28013 (+538)
https://data.monarchinitiative.org/ttl/animalqtldb.ttl 23510 (0)
https://data.monarchinitiative.org/ttl/impc.ttl 12948 (0)
https://data.monarchinitiative.org/ttl/go.ttl 5111 (+38)
Other 0 (0)
https://data.monarchinitiative.org/ttl/udp.ttl 0 (-3)
https://data.monarchinitiative.org/ttl/clinvar.ttl 0 (-134239)

Publication Disease By Source

Production Query

Dev Query

source count
Total 294158 (+57610)
https://data.monarchinitiative.org/ttl/ctd.ttl 98954 (+452)
https://data.monarchinitiative.org/ttl/zfin.ttl 82208 (+12902)
https://data.monarchinitiative.org/ttl/clinvar.nt 48917 (+48917)
https://data.monarchinitiative.org/ttl/wormbase.ttl 24885 (+24507)
https://data.monarchinitiative.org/ttl/go.ttl 20101 (+18869)
https://data.monarchinitiative.org/ttl/ncbigene.ttl 15283 (+15161)
https://data.monarchinitiative.org/ttl/mgi.ttl 14171 (+12047)
https://data.monarchinitiative.org/ttl/omia.ttl 13765 (0)
https://data.monarchinitiative.org/ttl/flybase.ttl 3857 (+1571)
https://data.monarchinitiative.org/ttl/coriell.ttl 3842 (+25)
https://data.monarchinitiative.org/ttl/gwascatalog.ttl 2316 (+184)
https://data.monarchinitiative.org/ttl/biogrid.ttl 1692 (+1692)
https://data.monarchinitiative.org/ttl/hpoa.ttl 1463 (+273)
https://data.monarchinitiative.org/ttl/mgi_slim.ttl 751 (+24)
https://data.monarchinitiative.org/ttl/hgnc.ttl 425 (+424)
https://data.monarchinitiative.org/ttl/monarch.ttl 184 (0)
https://data.monarchinitiative.org/ttl/mmrrc.ttl 102 (+2)
Other 0 (0)
https://data.monarchinitiative.org/ttl/clinvar.ttl 0 (-44539)

Genotype Phenotype Associations By Taxa

Production Query

Dev Query

species count
Total 560622 (-400490)
Mus musculus 358852 (+6006)
Danio rerio 107131 (+5202)
Homo sapiens 75564 (+1160)
organism 17500 (+449)
sequence_alteration 1520 (+1520)
Mus musculus molossinus 13 (0)
Mus musculus castaneus 12 (0)
NCBITaxon:477815 12 (0)
NCBITaxon:10102 8 (0)
Mus 4 (0)
Mus musculus musculus 3 (-11)
Mus spretus 2 (0)
Mus musculus bactrianus 1 (0)
Mus musculus domesticus 0 (-2540)
Other 0 (0)
Drosophila melanogaster 0 (-412276)

Case Phenotype By Source

Production Query

Dev Query

source count
Total 1085 (0)
https://data.monarchinitiative.org/ttl/udp.ttl 1076 (0)
https://data.monarchinitiative.org/ttl/coriell.ttl 9 (0)
Other 0 (0)

Variant Disease Associations By Taxa

Production Query

Dev Query

species count
Total 113017 (+8384)
Homo sapiens 112242 (+8420)
organism 737 (-36)
Mus musculus 37 (+16)
Bos taurus 1 (0)
Mus musculus domesticus 0 (-16)
Other 0 (0)

Gene Disease Non-causal Associations By Taxa

Production Query

Dev Query

species count
Total 33780 (+16285)
Homo sapiens 33391 (+16213)
Mus musculus 215 (+10)
Rattus norvegicus 34 (+2)
Drosophila melanogaster 33 (-1)
Danio rerio 24 (0)
Simian virus 40 18 (+18)
Human immunodeficiency virus 1 10 (+10)
Hepacivirus C 9 (+9)
Sus scrofa 5 (0)
Hepatitis C virus subtype 2a 5 (+5)
Human betaherpesvirus 5 5 (+5)
Bos taurus 4 (0)
Escherichia coli 4 (+4)
Caenorhabditis elegans 4 (0)
Candida albicans 4 (+4)
Gallus gallus 2 (0)
NCBITaxon:528354 2 (+2)
Pseudomonas aeruginosa 2 (+2)
Xenopus (Silurana) tropicalis 2 (+1)
Enterococcus faecalis 2 (+2)
NCBITaxon:387139 2 (+2)
NCBITaxon:1392869 1 (+1)
Salmonella enterica subsp. enterica serovar Typhi 1 (+1)
Vaccinia virus WR 1 (+1)
Other 0 (0)
Mus musculus domesticus 0 (-5)
Canis lupus familiaris 0 (-1)

Case Gene By Source

Production Query

Dev Query

source count
Total 1292 (+26)
https://data.monarchinitiative.org/ttl/coriell.ttl 1290 (+28)
https://data.monarchinitiative.org/ttl/omim.ttl 1267 (+3)
https://data.monarchinitiative.org/ttl/gwascatalog.ttl 127 (+127)
https://data.monarchinitiative.org/ttl/udp.ttl 2 (-2)
Other 0 (0)

Gene Disease Causal Associations By Taxa

Production Query

Dev Query

species count
Total 10337 (+205)
Homo sapiens 9588 (+191)
Canis lupus familiaris 230 (0)
Bos taurus 120 (0)
Felis catus 62 (0)
Ovis aries 47 (0)
Gallus gallus 41 (0)
Equus caballus 39 (0)
Sus scrofa 38 (0)
Capra hircus 15 (0)
Mus musculus 12 (+1)
Oryctolagus cuniculus 12 (0)
Coturnix japonica 9 (0)
Equus asinus 5 (0)
Neovison vison 5 (0)
Mesocricetus auratus 4 (0)
Bubalus bubalis 4 (0)
Oryzias latipes 3 (0)
Vulpes lagopus 3 (0)
NCBITaxon:198806 3 (0)
Candida albicans 3 (+3)
Bos grunniens 3 (0)
Macaca mulatta 3 (0)
NCBITaxon:48883 2 (0)
Human alphaherpesvirus 1 2 (+2)
Vulpes vulpes 2 (0)
NCBITaxon:32536 2 (0)
Macaca fascicularis 2 (0)
Pseudomonas aeruginosa PAO1 2 (+2)
Mustela putorius furo 2 (0)
Meleagris gallopavo 2 (0)
Micrococcus luteus 2 (+2)
Vaccinia virus WR 2 (+2)
Hepacivirus C 2 (+2)
Mammuthus primigenius 2 (0)
Macaca fuscata 1 (0)
Peromyscus maniculatus 1 (0)
NCBITaxon:118797 1 (0)
NCBITaxon:61455 1 (0)
NCBITaxon:345164 1 (0)
Cavia porcellus 1 (0)
Astyanax 1 (0)
Gorilla gorilla 1 (0)
Oreochromis niloticus 1 (0)
NCBITaxon:61406 1 (0)
Takifugu rubripes 1 (0)
Sciurus carolinensis 1 (0)
NCBITaxon:9579 1 (0)
Panthera tigris 1 (0)
Elephas maximus 1 (0)
Rattus norvegicus 1 (0)
Camelus dromedarius 1 (0)
NCBITaxon:9691 1 (0)
NCBITaxon:70340 1 (0)
Pan troglodytes 1 (0)
Peromyscus polionotus 1 (0)
Phoenicopterus ruber 1 (0)
NCBITaxon:8523 1 (0)
Rangifer tarandus 1 (0)
Canis latrans 1 (0)
NCBITaxon:38666 1 (0)
NCBITaxon:255217 1 (0)
NCBITaxon:46844 1 (0)
Dromaius novaehollandiae 1 (0)
NCBITaxon:338458 1 (0)
Panthera tigris tigris 1 (0)
Tursiops truncatus 1 (0)
Bos mutus 1 (0)
NCBITaxon:68352 1 (0)
Delphinapterus leucas 1 (0)
NCBITaxon:103584 1 (0)
Numida meleagris 1 (0)
NCBITaxon:61402 1 (0)
Cebus apella 1 (0)
Sus scrofa domesticus 1 (0)
Columba livia 1 (0)
Ursus americanus 1 (0)
Hepatitis C virus subtype 2a 1 (+1)
Canis lupus 1 (0)
NCBITaxon:9690 1 (0)
NCBITaxon:273489 1 (0)
Symphalangus syndactylus 1 (0)
NCBITaxon:37029 1 (0)
NCBITaxon:120794 1 (0)
Balaenoptera acutorostrata 1 (0)
NCBITaxon:43597 1 (0)
NCBITaxon:57662 1 (0)
Anas platyrhynchos 1 (0)
Aepyceros melampus 1 (0)
NCBITaxon:57661 1 (0)
NCBITaxon:61386 1 (0)
Coturnix coturnix 1 (0)
NCBITaxon:87177 1 (0)
NCBITaxon:54059 1 (0)
NCBITaxon:34892 1 (0)
Ctenopharyngodon idella 1 (0)
NCBITaxon:9773 1 (0)
Hylobates lar 1 (0)
NCBITaxon:328808 1 (0)
Mus musculus domesticus 0 (-1)
Other 0 (0)

Case Disease By Source

Production Query

Dev Query

source count
Total 11337 (+30)
https://data.monarchinitiative.org/ttl/coriell.ttl 11299 (+30)
https://data.monarchinitiative.org/ttl/udp.ttl 38 (0)
Other 0 (0)

Gene Pathway By Taxa

Production Query

Dev Query

source count
Total 306816 (-9857)
Homo sapiens 141837 (+9)
Mus musculus 26978 (+947)
Rattus norvegicus 23563 (+19)
Canis lupus familiaris 19579 (-583)
Sus scrofa 19468 (-2047)
Danio rerio 19119 (-7123)
Bos taurus 18816 (-2304)
Gallus gallus 13867 (-2303)
Drosophila melanogaster 11514 (+795)
Caenorhabditis elegans 11345 (+3206)
Hepatitis C virus subtype 2a 115 (+115)
Dengue virus group 97 (+97)
Simian virus 40 91 (+91)
Bacillus megaterium 81 (+81)
Human immunodeficiency virus 1 67 (+67)
Hepacivirus C 63 (+63)
HIV-1 M:B_HXB2R 31 (+31)
NCBITaxon:528354 24 (+24)
Candida albicans 23 (+23)
Vaccinia virus WR 22 (+22)
Pseudomonas aeruginosa 20 (+20)
Jaagsiekte sheep retrovirus 20 (+20)
Human alphaherpesvirus 1 9 (+9)
Influenzavirus A 8 (+8)
Micrococcus luteus 7 (+7)
Staphylococcus aureus subsp. aureus 6 (+6)
NCBITaxon:70865 6 (+6)
Streptococcus pneumoniae 5 (+5)
NCBITaxon:536056 5 (+5)
Escherichia coli 4 (+4)
Human betaherpesvirus 5 4 (+4)
NCBITaxon:1392869 3 (+3)
NCBITaxon:176281 3 (+3)
Pseudomonas aeruginosa PAO1 3 (+3)
Leishmania major 3 (+3)
Enterococcus faecalis 3 (+3)
Salmonella enterica subsp. enterica serovar Typhi 3 (+3)
NCBITaxon:387139 3 (+3)
HIV-1 M:C_ETH2220 1 (+1)
Other 0 (0)
organism 0 (-878)
Mus musculus domesticus 0 (-325)

Relations

Production Query

Dev Query

relation count
Total 36969880 (-5470494)
is_about 8570483 (+408855)
has phenotype 4700118 (-443732)
interacts with 3673680 (+49796)
in paralogy relationship with 2930997 (+144067)
Source 2693235 (+98973)
Other 2598956 (-2292558)
in 1 to 1 orthology relationship with 2552753 (+563143)
in orthology relationship with 2108274 (+396846)
expressed in 1862905 (+4434)
involved_in 1550254 (+446499)
is_allele_of 852813 (-168879)
is part of 470272 (+113457)
enables 416744 (+98074)
has_affected_feature 407103 (+249351)
has_genotype 404688 (-343123)
in xenology relationship with 289221 (-4012)
contributes to condition 196347 (+165277)
is marker for 140576 (+537)
mentions 104794 (-4585899)
targets_gene 66681 (-108812)
is_expression_variant_of 64214 (-107054)
colocalizes with 60486 (-22770)
pathogenic_for_condition 58454 (+3157)
is_reference_allele_of 58315 (+178)
is model of 37733 (-4)
genetically interacts with 30684 (+4454)
derives_from 29866 (+59)
likely_pathogenic_for_condition 19597 (+923)
causes condition 10493 (-341)
sequence_derives_from 8557 (-141571)
is causal susceptibility factor for 459 (+459)
contributes to 72 (-279)
disease has basis in feature 54 (+1)
is_variant_allele_of 2 (0)

Genotype Phenotype Associations By Source

Production Query

Dev Query

source count
Total 560622 (-400490)
https://data.monarchinitiative.org/ttl/mgi.ttl 338521 (+4853)
https://data.monarchinitiative.org/ttl/zfin.ttl 107131 (+17201)
https://data.monarchinitiative.org/ttl/coriell.ttl 75564 (+1160)
https://data.monarchinitiative.org/ttl/hpoa.ttl 75561 (+1160)
https://data.monarchinitiative.org/ttl/impc.ttl 28433 (0)
https://data.monarchinitiative.org/ttl/mpd.ttl 10963 (+578)
https://data.monarchinitiative.org/ttl/mgi_slim.ttl 10 (0)
Other 0 (0)
https://data.monarchinitiative.org/ttl/flybase.ttl 0 (-412276)
https://data.monarchinitiative.org/ttl/go.ttl 0 (-12006)

Variant Disease Associations By Source

Production Query

Dev Query

source count
Total 113017 (+8384)
https://data.monarchinitiative.org/ttl/clinvar.nt 77731 (+77731)
https://data.monarchinitiative.org/ttl/gwascatalog.ttl 33026 (+4302)
https://data.monarchinitiative.org/ttl/coriell.ttl 1028 (+3)
https://data.monarchinitiative.org/ttl/omim.ttl 1011 (-25)
https://data.monarchinitiative.org/ttl/udp.ttl 110 (0)
https://data.monarchinitiative.org/ttl/ctd.ttl 43 (0)
https://data.monarchinitiative.org/ttl/hpoa.ttl 35 (+35)
https://data.monarchinitiative.org/ttl/mgi.ttl 30 (0)
https://data.monarchinitiative.org/ttl/orphanet.ttl 3 (0)
https://data.monarchinitiative.org/ttl/mgi_slim.ttl 3 (0)
https://data.monarchinitiative.org/ttl/impc.ttl 1 (0)
Other 0 (0)
https://data.monarchinitiative.org/ttl/clinvar.ttl 0 (-73667)

Gene Variant Associations By Taxa

Production Query

Dev Query

species count
Total 1457685 (-276787)
Mus musculus 861738 (+35917)
Homo sapiens 221187 (+50666)
Drosophila melanogaster 181505 (-288902)
Caenorhabditis elegans 116437 (+284)
Danio rerio 39099 (+1461)
Bos taurus 16962 (-62)
organism 9746 (+5889)
Sus scrofa 3353 (-27)
Gallus gallus 1687 (-25)
Drosophila ananassae 601 (-10)
Drosophila virilis 571 (-6)
Drosophila subobscura 536 (0)
Drosophila hydei 523 (-15)
Drosophila simulans 433 (-6)
Drosophila pseudoobscura pseudoobscura 330 (0)
Equus caballus 235 (-4)
Drosophila willistoni 206 (0)
Rattus norvegicus 180 (-76)
Drosophila funebris 177 (-2)
NCBITaxon:40372 149 (0)
NCBITaxon:30033 123 (0)
NCBITaxon:7257 122 (0)
Drosophila mauritiana 122 (0)
Drosophila buzzatii 121 (-2)
NCBITaxon:95109 95 (0)
Drosophila immigrans 91 (0)
Drosophila miranda 88 (0)
NCBITaxon:30019 88 (0)
NCBITaxon:7246 58 (0)
NCBITaxon:7300 53 (0)
NCBITaxon:76712 52 (0)
NCBITaxon:7231 50 (0)
Drosophila mojavensis 44 (0)
Drosophila affinidisjuncta 42 (0)
Hepacivirus C 42 (+42)
Drosophila teissieri 41 (0)
NCBITaxon:30042 39 (0)
Drosophila persimilis 39 (0)
Candida albicans 35 (+35)
Drosophila littoralis 35 (0)
Drosophila paulistorum 32 (0)
Vaccinia virus WR 32 (+32)
Drosophila takahashii 30 (0)
Drosophila lutescens 27 (0)
NCBITaxon:7218 26 (0)
Hepatitis C virus subtype 2a 26 (+26)
Drosophila arizonae 26 (0)
Micrococcus luteus 25 (+25)
NCBITaxon:60717 24 (0)
NCBITaxon:111875 24 (0)
Drosophila ambigua 19 (0)
NCBITaxon:42026 18 (0)
NCBITaxon:7283 18 (0)
Pseudomonas aeruginosa PAO1 17 (+17)
NCBITaxon:193351 17 (0)
NCBITaxon:7282 14 (0)
Drosophila auraria 14 (0)
NCBITaxon:125945 14 (0)
Drosophila sechellia 13 (0)
NCBITaxon:64960 12 (0)
Drosophila hawaiiensis 12 (0)
Human alphaherpesvirus 1 10 (-33)
Human betaherpesvirus 5 10 (+8)
Drosophila yakuba 9 (0)
NCBITaxon:30036 9 (0)
NCBITaxon:161732 8 (0)
NCBITaxon:47314 8 (0)
NCBITaxon:195057 8 (0)
Ovis aries 7 (-4)
Scaptodrosophila lebanonensis 7 (+1)
NCBITaxon:94111 6 (0)
NCBITaxon:30043 6 (0)
NCBITaxon:46794 6 (0)
NCBITaxon:7291 6 (0)
Drosophila grimshawi 6 (0)
NCBITaxon:77771 5 (+5)
NCBITaxon:103846 5 (0)
NCBITaxon:76946 5 (0)
NCBITaxon:30023 4 (0)
Human immunodeficiency virus 1 4 (-2)
Drosophila eugracilis 4 (0)
NCBITaxon:169138 4 (0)
Canis lupus familiaris 4 (-4)
NCBITaxon:69217 3 (0)
NCBITaxon:218680 3 (0)
Escherichia coli 3 (-14334)
Bacillus megaterium 3 (+3)
NCBITaxon:7249 3 (0)
Pan troglodytes 2 (0)
NCBITaxon:57910 2 (0)
NCBITaxon:30056 2 (0)
NCBITaxon:7279 2 (0)
NCBITaxon:40844 2 (0)
Drosophila equinoxialis 2 (0)
Drosophila pseudoobscura bogotana 2 (0)
NCBITaxon:42062 2 (0)
Salmonella enterica subsp. enterica serovar Typhi 2 (+2)
Drosophila erecta 2 (0)
Drosophila madeirensis 2 (0)
NCBITaxon:7297 2 (0)
NCBITaxon:46822 2 (0)
NCBITaxon:30028 2 (0)
Xenopus (Silurana) tropicalis 2 (0)
NCBITaxon:176281 1 (+1)
NCBITaxon:528354 1 (+1)
Saccharomyces cerevisiae S288C 1 (0)
HIV-1 M:B_HXB2R 1 (+1)
NCBITaxon:7248 1 (0)
Influenzavirus A 1 (+1)
NCBITaxon:310057 1 (0)
NCBITaxon:7271 1 (0)
Drosophila orena 1 (0)
Pseudomonas aeruginosa 1 (0)
NCBITaxon:133978 1 (0)
NCBITaxon:7270 1 (0)
NCBITaxon:198721 1 (0)
Drosophila borealis 1 (0)
NCBITaxon:30029 1 (0)
Arabidopsis thaliana 1 (-7)
NCBITaxon:7252 1 (0)
NCBITaxon:66368 1 (0)
NCBITaxon:141217 1 (0)
NCBITaxon:1392869 1 (+1)
NCBITaxon:133981 1 (0)
Leishmania major 1 (+1)
NCBITaxon:7284 1 (0)
NCBITaxon:134002 1 (0)
Rhodobacter sphaeroides 0 (-1)
NCBITaxon:108931 0 (-2)
BNODE:a35efa09e0fb254e16a 0 (-14)
Heliothis virescens 0 (-3)
Human papillomavirus type 18 0 (-2)
NCBITaxon:191766 0 (-1)
NCBITaxon:139456 0 (-1)
Helicobacter pylori 0 (-2)
Zygosaccharomyces bailii 0 (-3)
Lucilia cuprina 0 (-3)
BNODE:bb2cf0ff025d4622cf5 0 (-16)
Amphimedon queenslandica 0 (-2)
Vaccinia virus 0 (-1)
Entacmaea quadricolor 0 (-21)
NCBITaxon:11913 0 (-1)
Peanut clump virus 0 (-1)
Kluyveromyces lactis 0 (-7)
NCBITaxon:35572 0 (-1)
NCBITaxon:4957 0 (-3)
NCBITaxon:35525 0 (-2)
NCBITaxon:46758 0 (-8)
NCBITaxon:196280 0 (-3)
NCBITaxon:7007 0 (-1)
Halocynthia roretzi 0 (-1)
NCBITaxon:12022 0 (-4)
Other 0 (0)
Rhodococcus sp. 0 (-4)
NCBITaxon:7740 0 (-4)
NCBITaxon:191210 0 (-2)
NCBITaxon:95512 0 (-4)
NCBITaxon:7038 0 (-2)
Aeromonas salmonicida 0 (-2)
NCBITaxon:118641 0 (-1)
Limulus polyphemus 0 (-2)
Escherichia virus P1 0 (-17)
NCBITaxon:2014434 0 (-1)
Apis mellifera 0 (-13)
Enterococcus faecalis 0 (-1)
NCBITaxon:418985 0 (-3)
Pseudopleuronectes americanus 0 (-3)
Glycine max 0 (-2)
NCBITaxon:45455 0 (-4)
Pediculus humanus 0 (-1)
Armoracia rusticana 0 (-1)
BNODE:b1a448feb24de46088b 0 (-1)
Artemia franciscana 0 (-6)
Rhodopseudomonas palustris 0 (-2)
Saccharomyces cerevisiae 0 (-26882)
Ricinus communis 0 (-7)
Macaca mulatta polyomavirus 1 0 (-5)
BNODE:e66d689dd86a07aea60 0 (-3)
NCBITaxon:1051066 0 (-1)
BNODE:f8141fdf82ae439afe6 0 (-3)
Human adenovirus 5 0 (-5)
BNODE:13446b3196cf19c664c 0 (-5)
Bombyx mori 0 (-18)
NCBITaxon:7010 0 (-4)
NCBITaxon:2389 0 (-15)
Megaselia scalaris 0 (-1)
Toxoplasma gondii 0 (-3)
NCBITaxon:1962953 0 (-1)
NCBITaxon:56459 0 (-1)
NCBITaxon:55084 0 (-1)
Neurospora crassa 0 (-94)
Trichoplax adhaerens 0 (-2)
NCBITaxon:10456 0 (-1)
NCBITaxon:658227 0 (-24)
Xenopus laevis 0 (-33)
Guillardia theta 0 (-4)
NCBITaxon:2138 0 (-3)
Campoletis sonorensis ichnovirus 0 (-2)
Hydra vulgaris 0 (-3)
NCBITaxon:3821 0 (-1)
Zygosaccharomyces rouxii 0 (-4)
Potato virus X 0 (-1)
NCBITaxon:109461 0 (-2)
Drosophila C virus 0 (-4)
NCBITaxon:148603 0 (-6)
Human T-lymphotropic virus 2 0 (-1)
Staphylococcus aureus 0 (-3)
Bacillus anthracis 0 (-3)
Glossina morsitans 0 (-3)
Anopheles gambiae 0 (-80)
Bacillus halodurans 0 (-2)
Oryza sativa 0 (-2)
Bordetella pertussis 0 (-5)
Spodoptera frugiperda ascovirus 1a 0 (-3)
NCBITaxon:32392 0 (-1)
Acyrthosiphon pisum 0 (-2)
Ceratitis capitata 0 (-5)
Aequorea victoria 0 (-3561)
Human T-cell leukemia virus type I 0 (-1)
Escherichia virus Lambda 0 (-2)
NCBITaxon:496660 0 (-4)
Ciona intestinalis 0 (-4)
NCBITaxon:1649241 0 (-1)
Autographa californica nucleopolyhedrovirus 0 (-14)
Cricetulus griseus 0 (-1)
Tribolium castaneum 0 (-24)
NCBITaxon:88209 0 (-2)
Streptomyces hygroscopicus 0 (-1)
Bungarus multicinctus 0 (-2)
NCBITaxon:38358 0 (-6)
Tomato bushy stunt virus 0 (-4)
Mesocricetus auratus 0 (-5)
Nodamura virus 0 (-1)
NCBITaxon:80765 0 (-3)
Bradyrhizobium sp. 0 (-7)
NCBITaxon:955 0 (-5)
NCBITaxon:301887 0 (-1)
Blattella germanica 0 (-2)
NCBITaxon:11309 0 (-3)
Cucurbit aphid-borne yellows virus 0 (-1)
Corynephage beta 0 (-13)
NCBITaxon:5530 0 (-2)
NCBITaxon:32630 0 (-197)
Hemitripterus americanus 0 (-1)
Turnip crinkle virus 0 (-1)
Triticum aestivum 0 (-2)
Vibrio cholerae 0 (-3)
NCBITaxon:12287 0 (-8)
Manduca sexta 0 (-1)
Schistosoma japonicum 0 (-2)
Heteractis crispa 0 (-2)
Arachis hypogaea 0 (-1)
Brevundimonas diminuta 0 (-1)
NCBITaxon:491304 0 (-1)
Human mastadenovirus C 0 (-5)
NCBITaxon:7120 0 (-1)
Conus marmoreus 0 (-1)
NCBITaxon:86600 0 (-349)
BNODE:e3f956b320a9fec1cf3 0 (-1)
NCBITaxon:2387 0 (-13)
NCBITaxon:45264 0 (-2)
NCBITaxon:51655 0 (-1)
NCBITaxon:12227 0 (-11)
Chlamydomonas reinhardtii 0 (-47)
Euglena gracilis 0 (-3)
NCBITaxon:4808 0 (-1)
Danaus plexippus 0 (-6)
NCBITaxon:32644 0 (-57)
Sindbis virus 0 (-2)
Photinus pyralis 0 (-143)
Hadronyche versuta 0 (-2)
Enterobacteria phage T7 0 (-9)
BNODE:fc3f087ca372cb4d3a9 0 (-14)
NCBITaxon:499226 0 (-1)
NCBITaxon:28456 0 (-4)
Ixodes scapularis 0 (-1)
NCBITaxon:7111 0 (-8)
NCBITaxon:8204 0 (-5)
Anopheles funestus 0 (-4)
Culex pipiens 0 (-3)
Listeria monocytogenes 0 (-5)
NCBITaxon:55100 0 (-3)
NCBITaxon:161601 0 (-1)
Clavularia sp. 0 (-2)
NCBITaxon:1162220 0 (-1)
Natronomonas pharaonis 0 (-7)
Cupiennius salei 0 (-8)
Streptococcus pyogenes 0 (-27)
Monosiga brevicollis 0 (-3)
Penaeus merguiensis 0 (-1)
NCBITaxon:12232 0 (-1)
BNODE:eaba42a506034628afd 0 (-3)
BNODE:1f58a0779e93c2ed4d2 0 (-1)
NCBITaxon:35743 0 (-1)
NCBITaxon:82678 0 (-2)
NCBITaxon:46745 0 (-1)
Deinococcus radiodurans 0 (-2)
Providencia stuartii 0 (-2)
NCBITaxon:39722 0 (-1)
NCBITaxon:1208342 0 (-2)
Salmonella enterica subsp. enterica serovar Typhimurium 0 (-6)
Oryctolagus cuniculus 0 (-11)
NCBITaxon:7119 0 (-2)
NCBITaxon:12470 0 (-12)
Vibrio parahaemolyticus 0 (-3)
Clostridium tetani 0 (-19)
Bacillus subtilis 0 (-3)
Beet yellows virus 0 (-1)
Musca domestica 0 (-13)
Aedes aegypti 0 (-8)
NCBITaxon:62873 0 (-2)
Mus musculus domesticus 0 (-35507)
NCBITaxon:6136 0 (-6)
Cricket paralysis virus 0 (-2)
Schistocerca americana 0 (-2)
NCBITaxon:703 0 (-1)

Model Disease Associations By Source

Production Query

Dev Query

source count
Total 26434 (-34)
https://data.monarchinitiative.org/ttl/coriell.ttl 12024 (+41)
https://data.monarchinitiative.org/ttl/mgi.ttl 7975 (+171)
https://data.monarchinitiative.org/ttl/wormbase.ttl 3328 (+291)
https://data.monarchinitiative.org/ttl/flybase.ttl 1207 (-594)
https://data.monarchinitiative.org/ttl/zfin.ttl 967 (+57)
https://data.monarchinitiative.org/ttl/omia.ttl 933 (0)
Other 0 (0)

Pathway Phenotype By Source

Production Query

Dev Query

source count
Total 96966 (+1264)
https://data.monarchinitiative.org/ttl/coriell.ttl 89014 (+2804)
https://data.monarchinitiative.org/ttl/hpoa.ttl 89014 (+2804)
https://data.monarchinitiative.org/ttl/omim.ttl 88945 (+2735)
https://data.monarchinitiative.org/ttl/ctd.ttl 86894 (+2726)
https://data.monarchinitiative.org/ttl/reactome.ttl 33356 (-529)
https://data.monarchinitiative.org/ttl/animalqtldb.ttl 7952 (-1540)
https://data.monarchinitiative.org/ttl/gwascatalog.ttl 7493 (+7493)
https://data.monarchinitiative.org/ttl/orphanet.ttl 884 (+468)
Other 0 (0)

Gene Homology By Subject Taxa

Production Query

Dev Query

source count
Total 7881245 (+1100044)
Mus musculus 1041581 (+70907)
Danio rerio 921927 (+94080)
Rattus norvegicus 827150 (+50029)
Caenorhabditis elegans 678047 (+65827)
Sus scrofa 614982 (+27704)
Homo sapiens 613461 (+52791)
Drosophila melanogaster 421371 (+60972)
Canis lupus familiaris 360894 (+360894)
Bos taurus 350282 (+26158)
Equus caballus 323831 (+25400)
Xenopus (Silurana) tropicalis 283761 (+24292)
Gallus gallus 277402 (+30730)
Pan troglodytes 211245 (+14601)
Monodelphis domestica 199203 (+13617)
Macaca mulatta 186173 (+13149)
Felis catus 179290 (+179290)
Anolis carolinensis 175165 (+12537)
Arabidopsis thaliana 113918 (-24478)
Saccharomyces cerevisiae S288C 82624 (+12229)
Ornithorhynchus anatinus 17384 (+1071)
organism 334 (0)
Salmonella enterica subsp. enterica serovar Typhi 131 (+131)
Human immunodeficiency virus 1 125 (+125)
Hepacivirus C 113 (+113)
Pseudomonas aeruginosa 93 (+93)
Hepatitis C virus subtype 2a 85 (+85)
Human betaherpesvirus 5 63 (+63)
Pseudomonas aeruginosa PAO1 61 (+61)
Staphylococcus aureus subsp. aureus 57 (+57)
Bacillus megaterium 51 (+51)
Candida albicans 45 (+45)
Micrococcus luteus 43 (+43)
Influenzavirus A 43 (+43)
Dengue virus group 38 (+38)
NCBITaxon:1392869 35 (+35)
Jaagsiekte sheep retrovirus 34 (+34)
NCBITaxon:176281 28 (+28)
Enterococcus faecalis 28 (+28)
HIV-1 M:B_HXB2R 26 (+26)
HIV-1 M:C_ETH2220 18 (+18)
Vaccinia virus WR 17 (+17)
Human alphaherpesvirus 1 16 (+16)
Simian virus 40 15 (+15)
NCBITaxon:70865 14 (+14)
NCBITaxon:387139 12 (+12)
Escherichia coli 11 (+11)
NCBITaxon:528354 10 (+10)
Leishmania major 8 (+8)
Mus musculus domesticus 0 (-12976)
Other 0 (0)

Case Variant By Source

Production Query

Dev Query

source count
Total 4408 (+6)
https://data.monarchinitiative.org/ttl/coriell.ttl 4296 (+6)
https://data.monarchinitiative.org/ttl/udp.ttl 112 (0)
Other 0 (0)

Publication Genotype By Source

Production Query

Dev Query

source count
Total 127930 (-201093)
https://data.monarchinitiative.org/ttl/mgi.ttl 79480 (+79480)
https://data.monarchinitiative.org/ttl/zfin.ttl 28888 (-17)
https://data.monarchinitiative.org/ttl/coriell.ttl 10395 (+95)
https://data.monarchinitiative.org/ttl/go.ttl 9167 (+157)
Other 0 (0)
https://data.monarchinitiative.org/ttl/flybase.ttl 0 (-280808)

Gene Interactions By Subject Taxa

Production Query

Dev Query

source count
Total 3764850 (+114736)
Homo sapiens 1415984 (+81721)
Mus musculus 729810 (+4392)
Rattus norvegicus 484929 (0)
Drosophila melanogaster 470895 (+889)
Caenorhabditis elegans 365031 (+23552)
Danio rerio 292821 (-122)
Hepatitis C virus subtype 2a 890 (+890)
Hepacivirus C 867 (+867)
Simian virus 40 516 (+516)
Human immunodeficiency virus 1 492 (+492)
Bacillus megaterium 463 (+463)
Vaccinia virus WR 370 (+370)
Candida albicans 256 (+256)
HIV-1 M:B_HXB2R 231 (+231)
Dengue virus group 228 (+228)
Micrococcus luteus 206 (+206)
Pseudomonas aeruginosa 124 (+124)
HIV-1 M:C_ETH2220 115 (+115)
Pseudomonas aeruginosa PAO1 114 (+114)
NCBITaxon:387139 108 (+108)
Salmonella enterica subsp. enterica serovar Typhi 83 (+83)
NCBITaxon:528354 64 (+64)
Jaagsiekte sheep retrovirus 38 (+38)
Staphylococcus aureus subsp. aureus 29 (+29)
Influenzavirus A 27 (+27)
Other 26 (0)
Streptococcus pneumoniae 25 (+25)
NCBITaxon:536056 25 (+25)
Escherichia coli 21 (+21)
Human alphaherpesvirus 1 14 (+14)
NCBITaxon:70865 14 (+14)
Human betaherpesvirus 5 11 (+11)
Leishmania major 10 (+10)
Enterococcus faecalis 5 (+5)
NCBITaxon:1392869 4 (+4)
NCBITaxon:176281 4 (+4)
organism 0 (-24)
Mus musculus domesticus 0 (-1026)

Gene Phenotype Associations By Source

Production Query

Dev Query

source count
Total 675395 (-47318)
https://data.monarchinitiative.org/ttl/mgi_slim.ttl 209417 (+3647)
https://data.monarchinitiative.org/ttl/hpoa.ttl 148647 (+17693)
https://data.monarchinitiative.org/ttl/orphanet.ttl 111894 (+14108)
https://data.monarchinitiative.org/ttl/clinvar.nt 96592 (+96592)
https://data.monarchinitiative.org/ttl/omim.ttl 86440 (+7846)
https://data.monarchinitiative.org/ttl/wormbase.ttl 76789 (+23072)
https://data.monarchinitiative.org/ttl/sgd.ttl 68224 (0)
https://data.monarchinitiative.org/ttl/zfinslim.ttl 61902 (+8468)
https://data.monarchinitiative.org/ttl/flybase.ttl 57210 (-138865)
https://data.monarchinitiative.org/ttl/gwascatalog.ttl 48993 (+48988)
https://data.monarchinitiative.org/ttl/impc.ttl 17417 (0)
https://data.monarchinitiative.org/ttl/mgi.ttl 16087 (0)
https://data.monarchinitiative.org/ttl/coriell.ttl 7151 (+286)
https://data.monarchinitiative.org/ttl/mmrrc.ttl 5164 (+50)
https://data.monarchinitiative.org/ttl/omia.ttl 981 (-28)
https://data.monarchinitiative.org/ttl/monarch.ttl 960 (-28)
https://data.monarchinitiative.org/ttl/rgd.ttl 489 (+33)
https://data.monarchinitiative.org/ttl/go.ttl 0 (-9775)
https://data.monarchinitiative.org/ttl/clinvar.ttl 0 (-89034)
Other 0 (0)
https://data.monarchinitiative.org/ttl/zfin.ttl 0 (-8943)

Disease Phenotype Associations By Source

Production Query

Dev Query

species count
Total 155914 (+9894)
https://data.monarchinitiative.org/ttl/hpoa.ttl 153871 (+9929)
https://data.monarchinitiative.org/ttl/monarch.ttl 1768 (-36)
https://data.monarchinitiative.org/ttl/omia.ttl 221 (0)
https://data.monarchinitiative.org/ttl/omim.ttl 2 (+2)
Other 0 (0)

Variant Genotype Associations By Source

Production Query

Dev Query

source count
Total 826592 (-858977)
https://data.monarchinitiative.org/ttl/mmrrc.ttl 369418 (+1244)
https://data.monarchinitiative.org/ttl/mgi.ttl 277370 (+6191)
https://data.monarchinitiative.org/ttl/zfin.ttl 161213 (+7851)
https://data.monarchinitiative.org/ttl/impc.ttl 72181 (+237)
https://data.monarchinitiative.org/ttl/coriell.ttl 7276 (+10)
https://data.monarchinitiative.org/ttl/udp.ttl 112 (0)
Other 0 (0)
https://data.monarchinitiative.org/ttl/flybase.ttl 0 (-873495)

Gene Pathway By Source

Production Query

Dev Query

source count
Total 306816 (-9857)
https://data.monarchinitiative.org/ttl/reactome.ttl 204028 (-9993)
https://data.monarchinitiative.org/ttl/ctd.ttl 135636 (-31)
https://data.monarchinitiative.org/ttl/ensembl.ttl 0 (-695)
Other 0 (0)

Model Disease Associations By Taxa

Production Query

Dev Query

species count
Total 26434 (-34)
Homo sapiens 12021 (+41)
Mus musculus 7856 (+658)
Caenorhabditis elegans 3328 (+291)
Drosophila melanogaster 1207 (-594)
Danio rerio 965 (+57)
Carnivora 684 (0)
Ruminantia 144 (0)
organism 98 (+1)
Felidae 55 (0)
Equidae 34 (0)
sequence_alteration 18 (+18)
Sus 5 (0)
Suidae 5 (0)
Gallus gallus 3 (0)
Bos taurus 3 (0)
NCBITaxon:477815 2 (0)
Bovidae 2 (0)
Other 2 (0)
Viridiplantae 1 (0)
Mus musculus castaneus 1 (0)
Mus musculus musculus 0 (-2)
Mus musculus domesticus 0 (-504)

Gene Function By Taxa

Production Query

Dev Query

source count
Total 1893761 (+431194)
Mus musculus 341851 (+5702)
Homo sapiens 314731 (+1210)
Rattus norvegicus 294395 (+3348)
Danio rerio 171877 (-3436)
Sus scrofa 137574 (+116059)
Gallus gallus 123144 (+106974)
Bos taurus 121784 (+100664)
Canis lupus familiaris 116201 (+96039)
Caenorhabditis elegans 101391 (+5353)
Drosophila melanogaster 100344 (+602)
Saccharomyces cerevisiae S288C 68899 (+168)
Human immunodeficiency virus 1 237 (+237)
Hepatitis C virus subtype 2a 202 (+202)
Candida albicans 159 (+159)
Hepacivirus C 148 (+148)
Simian virus 40 102 (+102)
Jaagsiekte sheep retrovirus 90 (+90)
NCBITaxon:528354 76 (+76)
Bacillus megaterium 57 (+57)
Pseudomonas aeruginosa 47 (+47)
HIV-1 M:B_HXB2R 43 (+43)
Salmonella enterica subsp. enterica serovar Typhi 42 (+42)
Vaccinia virus WR 39 (+39)
Dengue virus group 36 (+36)
HIV-1 M:C_ETH2220 29 (+29)
Influenzavirus A 25 (+25)
NCBITaxon:387139 25 (+25)
Escherichia coli 24 (+24)
Human alphaherpesvirus 1 23 (+23)
Micrococcus luteus 21 (+21)
Human betaherpesvirus 5 21 (+21)
Pseudomonas aeruginosa PAO1 21 (+21)
Staphylococcus aureus subsp. aureus 21 (+21)
NCBITaxon:176281 20 (+20)
Enterococcus faecalis 18 (+18)
NCBITaxon:70865 11 (+11)
Leishmania major 11 (+11)
NCBITaxon:1392869 8 (+8)
Streptococcus pneumoniae 7 (+7)
NCBITaxon:536056 7 (+7)
Mus musculus domesticus 0 (-2181)
Other 0 (0)
organism 0 (-878)

Gene Disease Causal Associations By Source

Production Query

Dev Query

species count
Total 10337 (+205)
https://data.monarchinitiative.org/ttl/orphanet.ttl 6124 (+89)
https://data.monarchinitiative.org/ttl/clinvar.nt 5588 (+5588)
https://data.monarchinitiative.org/ttl/kegg.ttl 5307 (-1)
https://data.monarchinitiative.org/ttl/omim.ttl 5228 (-6)
https://data.monarchinitiative.org/ttl/ctd.ttl 4921 (-5)
https://data.monarchinitiative.org/ttl/omia.ttl 725 (0)
https://data.monarchinitiative.org/ttl/mgi.ttl 11 (0)
https://data.monarchinitiative.org/ttl/gwascatalog.ttl 8 (+7)
https://data.monarchinitiative.org/ttl/mgi_slim.ttl 7 (+1)
https://data.monarchinitiative.org/ttl/mmrrc.ttl 3 (0)
https://data.monarchinitiative.org/ttl/impc.ttl 1 (0)
Other 0 (0)
https://data.monarchinitiative.org/ttl/clinvar.ttl 0 (-5512)

Disease Phenotype Associations By Taxa

Production Query

Dev Query

species count
Total 155914 (+9894)
Other 145516 (-488)
Homo sapiens 10398 (+10382)

Gene Disease Non-Causal Associations By Source

Production Query

Dev Query

species count
Total 33780 (+16285)
https://data.monarchinitiative.org/ttl/gwascatalog.ttl 16784 (+16543)
https://data.monarchinitiative.org/ttl/ctd.ttl 16184 (+224)
https://data.monarchinitiative.org/ttl/orphanet.ttl 1188 (+5)
https://data.monarchinitiative.org/ttl/omim.ttl 739 (-43)
https://data.monarchinitiative.org/ttl/kegg.ttl 534 (-76)
https://data.monarchinitiative.org/ttl/clinvar.nt 344 (+344)
https://data.monarchinitiative.org/ttl/coriell.ttl 36 (+1)
https://data.monarchinitiative.org/ttl/udp.ttl 2 (-2)
Other 0 (0)
https://data.monarchinitiative.org/ttl/clinvar.ttl 0 (-388)

Gene Interactions By Source

Production Query

Dev Query

source count
Total 3764850 (+114736)
https://data.monarchinitiative.org/ttl/string.ttl 2982400 (+2396)
https://data.monarchinitiative.org/ttl/biogrid.ttl 931518 (+154714)
Other 0 (0)

Case Genotype By Source

Production Query

Dev Query

source count
Total 3840 (+17)
https://data.monarchinitiative.org/ttl/coriell.ttl 3807 (+17)
https://data.monarchinitiative.org/ttl/udp.ttl 33 (0)
Other 0 (0)

SciGraph Queries

Sequence Features

Production Query

Dev Query

field count
features 7414604 (-1842905)

Genes in more than one taxa

Production Query

Dev Query

field count
request timeout 0

Genes

Production Query

Dev Query

field count
genes 1836464 (-663394)

Variant Loci

Production Query

Dev Query

field count
variants 863816 (-3274)

Gene Variant Mix-ups

Production Query

Dev Query

field count
variant 5179 (-5)

Gene Disease Mix-ups

Production Query

Dev Query

field count
gene 114 (+114)

Genotypes

Production Query

Dev Query

field count
genotypes 335901 (-441910)

Reagent Targeted Gene

Production Query

Dev Query

field count
rtg 106222 (-138446)

Disease Phenotype Mix-ups

Production Query

Dev Query

field count
disease 131 (+3)

Number of edges connected to owl:Nothing

Production Query

Dev Query

field count
nothing 0 (0)

nodes with subClassOf cycles (depth 2)

Production Query

Dev Query

field count
node_count 2 (+1)

nodes with subClassOf cycles (depth 1)

Production Query

Dev Query

field count
node_count 127 (+126)