Solr Queries

Disease Phenotype Associations By Source

Production Query

Dev Query

species count
Total 155914 (+9894)
https://data.monarchinitiative.org/ttl/hpoa.ttl 153871 (+9929)
https://data.monarchinitiative.org/ttl/monarch.ttl 1768 (-36)
https://data.monarchinitiative.org/ttl/omia.ttl 221 (0)
https://data.monarchinitiative.org/ttl/omim.ttl 2 (+2)
Other 0 (0)

Publication Disease By Source

Production Query

Dev Query

source count
Total 294170 (+57622)
https://data.monarchinitiative.org/ttl/ctd.ttl 98954 (+452)
https://data.monarchinitiative.org/ttl/zfin.ttl 82208 (+12902)
https://data.monarchinitiative.org/ttl/clinvar.nt 48917 (+48917)
https://data.monarchinitiative.org/ttl/wormbase.ttl 24885 (+24507)
https://data.monarchinitiative.org/ttl/go.ttl 20101 (+18869)
https://data.monarchinitiative.org/ttl/ncbigene.ttl 15283 (+15161)
https://data.monarchinitiative.org/ttl/mgi.ttl 14171 (+12047)
https://data.monarchinitiative.org/ttl/omia.ttl 13765 (0)
https://data.monarchinitiative.org/ttl/flybase.ttl 3857 (+1571)
https://data.monarchinitiative.org/ttl/coriell.ttl 3842 (+25)
https://data.monarchinitiative.org/ttl/gwascatalog.ttl 2328 (+196)
https://data.monarchinitiative.org/ttl/biogrid.ttl 1692 (+1692)
https://data.monarchinitiative.org/ttl/hpoa.ttl 1463 (+273)
https://data.monarchinitiative.org/ttl/mgi_slim.ttl 751 (+24)
https://data.monarchinitiative.org/ttl/hgnc.ttl 425 (+424)
https://data.monarchinitiative.org/ttl/monarch.ttl 184 (0)
https://data.monarchinitiative.org/ttl/mmrrc.ttl 102 (+2)
Other 0 (0)
https://data.monarchinitiative.org/ttl/clinvar.ttl 0 (-44539)

Case Variant By Source

Production Query

Dev Query

source count
Total 4408 (+6)
https://data.monarchinitiative.org/ttl/coriell.ttl 4296 (+6)
https://data.monarchinitiative.org/ttl/udp.ttl 112 (0)
Other 0 (0)

Variant Phenotype Associations By Source

Production Query

Dev Query

source count
Total 3574215 (+62974)
https://data.monarchinitiative.org/ttl/hpoa.ttl 2039512 (+151038)
https://data.monarchinitiative.org/ttl/clinvar.nt 1954732 (+1954732)
https://data.monarchinitiative.org/ttl/mgi.ttl 735465 (-3090)
https://data.monarchinitiative.org/ttl/animalqtldb.ttl 213937 (+225)
https://data.monarchinitiative.org/ttl/wormbase.ttl 193000 (+72973)
https://data.monarchinitiative.org/ttl/gwascatalog.ttl 168662 (+103389)
https://data.monarchinitiative.org/ttl/zfin.ttl 164429 (+24216)
https://data.monarchinitiative.org/ttl/flybase.ttl 116655 (-252958)
https://data.monarchinitiative.org/ttl/impc.ttl 58252 (+242)
https://data.monarchinitiative.org/ttl/mgi_slim.ttl 33584 (+486)
https://data.monarchinitiative.org/ttl/omim.ttl 8264 (+218)
https://data.monarchinitiative.org/ttl/ctd.ttl 560 (0)
https://data.monarchinitiative.org/ttl/sgd.ttl 23 (0)
https://data.monarchinitiative.org/ttl/orphanet.ttl 23 (0)
https://data.monarchinitiative.org/ttl/coriell.ttl 3 (0)
https://data.monarchinitiative.org/ttl/go.ttl 0 (-50354)
https://data.monarchinitiative.org/ttl/clinvar.ttl 0 (-1816735)
Other 0 (0)

Case Disease By Source

Production Query

Dev Query

source count
Total 11337 (+30)
https://data.monarchinitiative.org/ttl/coriell.ttl 11299 (+30)
https://data.monarchinitiative.org/ttl/udp.ttl 38 (0)
Other 0 (0)

Relations

Production Query

Dev Query

relation count
Total 36970309 (-5470065)
is_about 8570485 (+408857)
has phenotype 4700205 (-443645)
interacts with 3673680 (+49796)
in paralogy relationship with 2930997 (+144067)
Source 2693437 (+99175)
Other 2598956 (-2292558)
in 1 to 1 orthology relationship with 2552769 (+563159)
in orthology relationship with 2108259 (+396831)
expressed in 1862905 (+4434)
involved_in 1550254 (+446499)
is_allele_of 852813 (-168879)
is part of 470272 (+113457)
enables 416744 (+98074)
has_affected_feature 407024 (+249272)
has_genotype 404688 (-343123)
in xenology relationship with 289220 (-4013)
contributes to condition 196563 (+165493)
is marker for 140573 (+534)
mentions 104793 (-4585900)
targets_gene 66684 (-108809)
is_expression_variant_of 64211 (-107057)
colocalizes with 60486 (-22770)
pathogenic_for_condition 58453 (+3156)
is_reference_allele_of 58315 (+178)
is model of 37733 (-4)
genetically interacts with 30684 (+4454)
derives_from 29866 (+59)
likely_pathogenic_for_condition 19598 (+924)
causes condition 10495 (-339)
sequence_derives_from 8557 (-141571)
is causal susceptibility factor for 459 (+459)
contributes to 75 (-276)
disease has basis in feature 54 (+1)
is_variant_allele_of 2 (0)

Variant Genotype Associations By Taxa

Production Query

Dev Query

species count
Total 826592 (-858977)
Mus musculus 652446 (+6495)
Danio rerio 161213 (+7851)
organism 7094 (-34)
Homo sapiens 4533 (+8)
sequence_alteration 1235 (+1235)
NCBITaxon:10102 20 (0)
Mus musculus molossinus 15 (0)
Mus musculus bactrianus 7 (0)
Mus spretus 6 (0)
Mus musculus musculus 5 (-6)
Mus 4 (0)
Rattus norvegicus 4 (0)
Mus musculus castaneus 4 (0)
Macaca mulatta 2 (0)
Plecturocebus moloch 1 (0)
Cricetulus griseus 1 (0)
Bos taurus 1 (0)
Saguinus labiatus 1 (0)
Drosophila melanogaster 0 (-873495)
Other 0 (0)
Mus musculus domesticus 0 (-1031)

Publication Model By Source

Production Query

Dev Query

source count
Total 48769 (+30291)
https://data.monarchinitiative.org/ttl/wormbase.ttl 15529 (+15278)
https://data.monarchinitiative.org/ttl/mgi.ttl 14965 (+12959)
https://data.monarchinitiative.org/ttl/go.ttl 12752 (+11679)
https://data.monarchinitiative.org/ttl/coriell.ttl 8639 (+51)
https://data.monarchinitiative.org/ttl/ncbigene.ttl 8024 (+7898)
https://data.monarchinitiative.org/ttl/flybase.ttl 4098 (+1667)
https://data.monarchinitiative.org/ttl/zfin.ttl 2903 (+336)
https://data.monarchinitiative.org/ttl/omia.ttl 2635 (0)
https://data.monarchinitiative.org/ttl/biogrid.ttl 957 (+957)
https://data.monarchinitiative.org/ttl/mgi_slim.ttl 781 (+24)
https://data.monarchinitiative.org/ttl/mmrrc.ttl 102 (+4)
https://data.monarchinitiative.org/ttl/ctd.ttl 3 (+3)
Other 0 (0)

Gene Pathway By Source

Production Query

Dev Query

source count
Total 306816 (-9857)
https://data.monarchinitiative.org/ttl/reactome.ttl 204028 (-9993)
https://data.monarchinitiative.org/ttl/ctd.ttl 135636 (-31)
https://data.monarchinitiative.org/ttl/ensembl.ttl 0 (-695)
Other 0 (0)

Gene Disease Causal Associations By Taxa

Production Query

Dev Query

species count
Total 10337 (+205)
Homo sapiens 9586 (+189)
Canis lupus familiaris 230 (0)
Bos taurus 120 (0)
Felis catus 62 (0)
Ovis aries 47 (0)
Gallus gallus 41 (0)
Equus caballus 39 (0)
Sus scrofa 38 (0)
Capra hircus 15 (0)
Mus musculus 12 (+1)
Oryctolagus cuniculus 12 (0)
Coturnix japonica 9 (0)
Escherichia coli 6 (+6)
Neovison vison 5 (0)
Equus asinus 5 (0)
Hepacivirus C 5 (+5)
Mesocricetus auratus 4 (0)
Bubalus bubalis 4 (0)
Vulpes lagopus 3 (0)
Oryzias latipes 3 (0)
NCBITaxon:198806 3 (0)
Macaca mulatta 3 (0)
Bos grunniens 3 (0)
Vulpes vulpes 2 (0)
Mustela putorius furo 2 (0)
Mammuthus primigenius 2 (0)
NCBITaxon:32536 2 (0)
Macaca fascicularis 2 (0)
Meleagris gallopavo 2 (0)
NCBITaxon:48883 2 (0)
Elephas maximus 1 (0)
NCBITaxon:103584 1 (0)
Aepyceros melampus 1 (0)
NCBITaxon:345164 1 (0)
Sciurus carolinensis 1 (0)
Canis lupus 1 (0)
Oreochromis niloticus 1 (0)
Numida meleagris 1 (0)
Influenzavirus A 1 (+1)
NCBITaxon:61386 1 (0)
Cebus apella 1 (0)
Hylobates lar 1 (0)
Hepatitis C virus subtype 2a 1 (+1)
Rangifer tarandus 1 (0)
Peromyscus polionotus 1 (0)
NCBITaxon:273489 1 (0)
Dromaius novaehollandiae 1 (0)
Rattus norvegicus 1 (0)
Columba livia 1 (0)
Sus scrofa domesticus 1 (0)
NCBITaxon:46844 1 (0)
Balaenoptera acutorostrata 1 (0)
NCBITaxon:8523 1 (0)
Pan troglodytes 1 (0)
Human gammaherpesvirus 4 1 (+1)
Phoenicopterus ruber 1 (0)
Peromyscus maniculatus 1 (0)
NCBITaxon:9691 1 (0)
NCBITaxon:9773 1 (0)
Tursiops truncatus 1 (0)
NCBITaxon:70340 1 (0)
Astyanax 1 (0)
Anas platyrhynchos 1 (0)
NCBITaxon:38666 1 (0)
NCBITaxon:87177 1 (0)
NCBITaxon:338458 1 (0)
NCBITaxon:9690 1 (0)
NCBITaxon:61406 1 (0)
Gorilla gorilla 1 (0)
Macaca fuscata 1 (0)
NCBITaxon:328808 1 (0)
Human immunodeficiency virus 1 1 (+1)
Bos mutus 1 (0)
Panthera tigris tigris 1 (0)
NCBITaxon:255217 1 (0)
NCBITaxon:61402 1 (0)
Ctenopharyngodon idella 1 (0)
Delphinapterus leucas 1 (0)
NCBITaxon:57662 1 (0)
Camelus dromedarius 1 (0)
NCBITaxon:57661 1 (0)
NCBITaxon:43597 1 (0)
Symphalangus syndactylus 1 (0)
NCBITaxon:9579 1 (0)
NCBITaxon:37029 1 (0)
Jaagsiekte sheep retrovirus 1 (+1)
Panthera tigris 1 (0)
Canis latrans 1 (0)
Cavia porcellus 1 (0)
NCBITaxon:34892 1 (0)
Coturnix coturnix 1 (0)
NCBITaxon:54059 1 (0)
Ursus americanus 1 (0)
Takifugu rubripes 1 (0)
NCBITaxon:68352 1 (0)
NCBITaxon:120794 1 (0)
NCBITaxon:61455 1 (0)
NCBITaxon:118797 1 (0)
Mus musculus domesticus 0 (-1)
Other 0 (0)

Variant Disease Associations By Taxa

Production Query

Dev Query

species count
Total 113322 (+8689)
Homo sapiens 112547 (+8725)
organism 737 (-36)
Mus musculus 37 (+16)
Bos taurus 1 (0)
Mus musculus domesticus 0 (-16)
Other 0 (0)

Gene Variant Associations By Source

Production Query

Dev Query

source count
Total 1457606 (-276866)
https://data.monarchinitiative.org/ttl/mgi.ttl 839376 (+976)
https://data.monarchinitiative.org/ttl/flybase.ttl 192674 (-336480)
https://data.monarchinitiative.org/ttl/clinvar.nt 129318 (+129318)
https://data.monarchinitiative.org/ttl/wormbase.ttl 116276 (+305)
https://data.monarchinitiative.org/ttl/gwascatalog.ttl 61522 (+61522)
https://data.monarchinitiative.org/ttl/mmrrc.ttl 48904 (+1456)
https://data.monarchinitiative.org/ttl/zfin.ttl 41213 (+1452)
https://data.monarchinitiative.org/ttl/omim.ttl 28013 (+538)
https://data.monarchinitiative.org/ttl/animalqtldb.ttl 23510 (0)
https://data.monarchinitiative.org/ttl/impc.ttl 12948 (0)
https://data.monarchinitiative.org/ttl/go.ttl 5111 (+38)
https://data.monarchinitiative.org/ttl/clinvar.ttl 0 (-134239)
https://data.monarchinitiative.org/ttl/udp.ttl 0 (-3)
Other 0 (0)

Gene Variant Associations By Taxa

Production Query

Dev Query

species count
Total 1457606 (-276866)
Mus musculus 861738 (+35917)
Homo sapiens 221084 (+50563)
Drosophila melanogaster 181505 (-288902)
Caenorhabditis elegans 116437 (+284)
Danio rerio 39099 (+1461)
Bos taurus 16962 (-62)
organism 9746 (+5889)
Sus scrofa 3353 (-27)
Gallus gallus 1687 (-25)
Drosophila ananassae 601 (-10)
Drosophila virilis 571 (-6)
Drosophila subobscura 536 (0)
Drosophila hydei 523 (-15)
Drosophila simulans 433 (-6)
Drosophila pseudoobscura pseudoobscura 330 (0)
Equus caballus 235 (-4)
Drosophila willistoni 206 (0)
Rattus norvegicus 180 (-76)
Drosophila funebris 177 (-2)
NCBITaxon:40372 149 (0)
NCBITaxon:30033 123 (0)
NCBITaxon:7257 122 (0)
Drosophila mauritiana 122 (0)
Drosophila buzzatii 121 (-2)
NCBITaxon:95109 95 (0)
Drosophila immigrans 91 (0)
Drosophila miranda 88 (0)
NCBITaxon:30019 88 (0)
Escherichia coli 75 (-14262)
Hepacivirus C 74 (+74)
NCBITaxon:7246 58 (0)
NCBITaxon:7300 53 (0)
NCBITaxon:76712 52 (0)
NCBITaxon:7231 50 (0)
Drosophila mojavensis 44 (0)
Drosophila affinidisjuncta 42 (0)
Drosophila teissieri 41 (0)
NCBITaxon:30042 39 (0)
Drosophila persimilis 39 (0)
Drosophila littoralis 35 (0)
Drosophila paulistorum 32 (0)
Drosophila takahashii 30 (0)
Drosophila lutescens 27 (0)
Drosophila arizonae 26 (0)
NCBITaxon:7218 26 (0)
NCBITaxon:111875 24 (0)
NCBITaxon:60717 24 (0)
Hepatitis C virus subtype 2a 19 (+19)
Drosophila ambigua 19 (0)
NCBITaxon:42026 18 (0)
NCBITaxon:7283 18 (0)
NCBITaxon:193351 17 (0)
NCBITaxon:125945 14 (0)
Drosophila auraria 14 (0)
NCBITaxon:7282 14 (0)
Drosophila sechellia 13 (0)
Human gammaherpesvirus 4 12 (+12)
NCBITaxon:64960 12 (0)
Drosophila hawaiiensis 12 (0)
Jaagsiekte sheep retrovirus 11 (+11)
Staphylococcus aureus subsp. aureus 10 (+10)
Drosophila yakuba 9 (0)
NCBITaxon:30036 9 (0)
NCBITaxon:47314 8 (0)
NCBITaxon:161732 8 (0)
NCBITaxon:195057 8 (0)
HIV-1 M:B_HXB2R 8 (+8)
Ovis aries 7 (-4)
Scaptodrosophila lebanonensis 7 (+1)
Drosophila grimshawi 6 (0)
NCBITaxon:46794 6 (0)
NCBITaxon:30043 6 (0)
Influenza A virus (A/chicken/Guangdong/1/2001(H5N1)) 6 (+6)
NCBITaxon:7291 6 (0)
NCBITaxon:94111 6 (0)
Human immunodeficiency virus 1 6 (0)
NCBITaxon:103846 5 (0)
NCBITaxon:77771 5 (+5)
Vaccinia virus 5 (+4)
NCBITaxon:76946 5 (0)
Canis lupus familiaris 4 (-4)
Drosophila eugracilis 4 (0)
Hepatitis B virus 4 (+4)
NCBITaxon:30023 4 (0)
NCBITaxon:169138 4 (0)
NCBITaxon:218680 3 (0)
Hepatitis C virus subtype 1b 3 (+3)
NCBITaxon:7249 3 (0)
NCBITaxon:69217 3 (0)
Drosophila erecta 2 (0)
Influenzavirus A 2 (+2)
NCBITaxon:7297 2 (0)
NCBITaxon:7279 2 (0)
Drosophila madeirensis 2 (0)
Drosophila pseudoobscura bogotana 2 (0)
Xenopus (Silurana) tropicalis 2 (0)
NCBITaxon:42062 2 (0)
Dengue virus group 2 (+2)
Pan troglodytes 2 (0)
Drosophila equinoxialis 2 (0)
NCBITaxon:30028 2 (0)
NCBITaxon:30056 2 (0)
NCBITaxon:40844 2 (0)
NCBITaxon:46822 2 (0)
NCBITaxon:57910 2 (0)
Bacillus subtilis 1 (-2)
Arabidopsis thaliana 1 (-7)
NCBITaxon:7270 1 (0)
NCBITaxon:1392869 1 (+1)
NCBITaxon:66368 1 (0)
Saccharomyces cerevisiae S288C 1 (0)
NCBITaxon:30029 1 (0)
NCBITaxon:7248 1 (0)
NCBITaxon:133981 1 (0)
NCBITaxon:528354 1 (+1)
NCBITaxon:141217 1 (0)
Drosophila orena 1 (0)
NCBITaxon:7252 1 (0)
Drosophila borealis 1 (0)
NCBITaxon:133978 1 (0)
NCBITaxon:7271 1 (0)
NCBITaxon:134002 1 (0)
NCBITaxon:310057 1 (0)
NCBITaxon:198721 1 (0)
NCBITaxon:7284 1 (0)
NCBITaxon:11309 0 (-3)
Human adenovirus 5 0 (-5)
Zygosaccharomyces rouxii 0 (-4)
Bradyrhizobium sp. 0 (-7)
Zygosaccharomyces bailii 0 (-3)
Saccharomyces cerevisiae 0 (-26882)
Human papillomavirus type 18 0 (-2)
Sindbis virus 0 (-2)
Photinus pyralis 0 (-143)
NCBITaxon:118641 0 (-1)
Glossina morsitans 0 (-3)
Rhodococcus sp. 0 (-4)
Triticum aestivum 0 (-2)
NCBITaxon:32644 0 (-57)
BNODE:a35efa09e0fb254e16a 0 (-14)
Vibrio cholerae 0 (-3)
Macaca mulatta polyomavirus 1 0 (-5)
Providencia stuartii 0 (-2)
Human alphaherpesvirus 1 0 (-43)
Streptomyces hygroscopicus 0 (-1)
Euglena gracilis 0 (-3)
NCBITaxon:703 0 (-1)
Beet yellows virus 0 (-1)
Heteractis crispa 0 (-2)
Neurospora crassa 0 (-94)
Conus marmoreus 0 (-1)
Toxoplasma gondii 0 (-3)
NCBITaxon:32630 0 (-197)
NCBITaxon:161601 0 (-1)
NCBITaxon:1208342 0 (-2)
NCBITaxon:62873 0 (-2)
Ricinus communis 0 (-7)
NCBITaxon:955 0 (-5)
NCBITaxon:658227 0 (-24)
Penaeus merguiensis 0 (-1)
NCBITaxon:7111 0 (-8)
Salmonella enterica subsp. enterica serovar Typhimurium 0 (-6)
Guillardia theta 0 (-4)
Escherichia virus P1 0 (-17)
NCBITaxon:45264 0 (-2)
Entacmaea quadricolor 0 (-21)
NCBITaxon:88209 0 (-2)
Natronomonas pharaonis 0 (-7)
Amphimedon queenslandica 0 (-2)
NCBITaxon:7038 0 (-2)
Tribolium castaneum 0 (-24)
Anopheles funestus 0 (-4)
NCBITaxon:12470 0 (-12)
NCBITaxon:148603 0 (-6)
Cricket paralysis virus 0 (-2)
Rhodopseudomonas palustris 0 (-2)
NCBITaxon:7007 0 (-1)
Cucurbit aphid-borne yellows virus 0 (-1)
Campoletis sonorensis ichnovirus 0 (-2)
NCBITaxon:12022 0 (-4)
Limulus polyphemus 0 (-2)
NCBITaxon:2387 0 (-13)
Streptococcus pyogenes 0 (-27)
Musca domestica 0 (-13)
Tomato bushy stunt virus 0 (-4)
NCBITaxon:7740 0 (-4)
Pediculus humanus 0 (-1)
Megaselia scalaris 0 (-1)
Trichoplax adhaerens 0 (-2)
Aeromonas salmonicida 0 (-2)
Pseudopleuronectes americanus 0 (-3)
Blattella germanica 0 (-2)
NCBITaxon:496660 0 (-4)
Cricetulus griseus 0 (-1)
BNODE:e66d689dd86a07aea60 0 (-3)
NCBITaxon:12232 0 (-1)
NCBITaxon:55084 0 (-1)
Autographa californica nucleopolyhedrovirus 0 (-14)
NCBITaxon:95512 0 (-4)
NCBITaxon:1051066 0 (-1)
NCBITaxon:51655 0 (-1)
NCBITaxon:418985 0 (-3)
NCBITaxon:139456 0 (-1)
Lucilia cuprina 0 (-3)
Culex pipiens 0 (-3)
Chlamydomonas reinhardtii 0 (-47)
NCBITaxon:2138 0 (-3)
BNODE:13446b3196cf19c664c 0 (-5)
NCBITaxon:11913 0 (-1)
NCBITaxon:7119 0 (-2)
NCBITaxon:1162220 0 (-1)
Artemia franciscana 0 (-6)
NCBITaxon:39722 0 (-1)
NCBITaxon:12227 0 (-11)
Corynephage beta 0 (-13)
Other 0 (0)
NCBITaxon:191766 0 (-1)
NCBITaxon:108931 0 (-2)
NCBITaxon:86600 0 (-349)
NCBITaxon:6136 0 (-6)
Deinococcus radiodurans 0 (-2)
NCBITaxon:46758 0 (-8)
NCBITaxon:1649241 0 (-1)
Escherichia virus Lambda 0 (-2)
BNODE:f8141fdf82ae439afe6 0 (-3)
Hydra vulgaris 0 (-3)
NCBITaxon:46745 0 (-1)
NCBITaxon:4957 0 (-3)
NCBITaxon:499226 0 (-1)
NCBITaxon:35743 0 (-1)
Staphylococcus aureus 0 (-3)
Schistosoma japonicum 0 (-2)
NCBITaxon:7120 0 (-1)
Mus musculus domesticus 0 (-35507)
Drosophila C virus 0 (-4)
Hemitripterus americanus 0 (-1)
NCBITaxon:38358 0 (-6)
Clavularia sp. 0 (-2)
NCBITaxon:12287 0 (-8)
Cupiennius salei 0 (-8)
NCBITaxon:10456 0 (-1)
NCBITaxon:82678 0 (-2)
Heliothis virescens 0 (-3)
Brevundimonas diminuta 0 (-1)
NCBITaxon:301887 0 (-1)
Bombyx mori 0 (-18)
Kluyveromyces lactis 0 (-7)
Ceratitis capitata 0 (-5)
Schistocerca americana 0 (-2)
Oryza sativa 0 (-2)
Rhodobacter sphaeroides 0 (-1)
BNODE:e3f956b320a9fec1cf3 0 (-1)
Human T-lymphotropic virus 2 0 (-1)
Human mastadenovirus C 0 (-5)
BNODE:b1a448feb24de46088b 0 (-1)
Bacillus anthracis 0 (-3)
NCBITaxon:4808 0 (-1)
Ciona intestinalis 0 (-4)
Listeria monocytogenes 0 (-5)
NCBITaxon:55100 0 (-3)
Arachis hypogaea 0 (-1)
NCBITaxon:2389 0 (-15)
NCBITaxon:45455 0 (-4)
Human T-cell leukemia virus type I 0 (-1)
Bacillus halodurans 0 (-2)
NCBITaxon:5530 0 (-2)
Bungarus multicinctus 0 (-2)
NCBITaxon:191210 0 (-2)
Monosiga brevicollis 0 (-3)
Mesocricetus auratus 0 (-5)
BNODE:fc3f087ca372cb4d3a9 0 (-14)
BNODE:eaba42a506034628afd 0 (-3)
NCBITaxon:3821 0 (-1)
Vibrio parahaemolyticus 0 (-3)
Armoracia rusticana 0 (-1)
Nodamura virus 0 (-1)
Aequorea victoria 0 (-3561)
Turnip crinkle virus 0 (-1)
BNODE:bb2cf0ff025d4622cf5 0 (-16)
Potato virus X 0 (-1)
Xenopus laevis 0 (-33)
Acyrthosiphon pisum 0 (-2)
Helicobacter pylori 0 (-2)
NCBITaxon:2014434 0 (-1)
NCBITaxon:7010 0 (-4)
Bordetella pertussis 0 (-5)
Glycine max 0 (-2)
Oryctolagus cuniculus 0 (-11)
NCBITaxon:80765 0 (-3)
Enterococcus faecalis 0 (-1)
NCBITaxon:35572 0 (-1)
Danaus plexippus 0 (-6)
Pseudomonas aeruginosa 0 (-1)
NCBITaxon:491304 0 (-1)
Enterobacteria phage T7 0 (-9)
NCBITaxon:196280 0 (-3)
Hadronyche versuta 0 (-2)
NCBITaxon:32392 0 (-1)
Manduca sexta 0 (-1)
Anopheles gambiae 0 (-80)
Aedes aegypti 0 (-8)
NCBITaxon:56459 0 (-1)
NCBITaxon:8204 0 (-5)
BNODE:1f58a0779e93c2ed4d2 0 (-1)
Halocynthia roretzi 0 (-1)
Ixodes scapularis 0 (-1)
NCBITaxon:109461 0 (-2)
Human betaherpesvirus 5 0 (-2)
Peanut clump virus 0 (-1)
Clostridium tetani 0 (-19)
NCBITaxon:28456 0 (-4)
Spodoptera frugiperda ascovirus 1a 0 (-3)
NCBITaxon:35525 0 (-2)
NCBITaxon:1962953 0 (-1)
Apis mellifera 0 (-13)

Gene Interactions By Subject Taxa

Production Query

Dev Query

source count
Total 3764850 (+114736)
Homo sapiens 1415618 (+81355)
Mus musculus 729810 (+4392)
Rattus norvegicus 484929 (0)
Drosophila melanogaster 470895 (+889)
Caenorhabditis elegans 365031 (+23552)
Danio rerio 292821 (-122)
Escherichia coli 1189 (+1189)
HIV-1 M:C_ETH2220 879 (+879)
Hepatitis C virus subtype 2a 668 (+668)
Human immunodeficiency virus 1 591 (+591)
Hepacivirus C 559 (+559)
Human alphaherpesvirus 1 440 (+440)
Human gammaherpesvirus 4 206 (+206)
Vaccinia virus 184 (+184)
Mammalian orthoreovirus 3 Dearing 148 (+148)
Staphylococcus aureus subsp. aureus 134 (+134)
Candida albicans 123 (+123)
NCBITaxon:1322345 91 (+91)
Dengue virus group 82 (+82)
Hepatitis B virus 65 (+65)
NCBITaxon:528354 64 (+64)
NCBITaxon:387139 57 (+57)
Hepatitis C virus subtype 1b 48 (+48)
NCBITaxon:1086030 33 (+33)
Other 26 (0)
HIV-1 M:B_HXB2R 26 (+26)
Streptococcus pneumoniae 25 (+25)
NCBITaxon:536056 25 (+25)
Influenza A virus (A/chicken/Guangdong/1/2001(H5N1)) 24 (+24)
Jaagsiekte sheep retrovirus 22 (+22)
Influenzavirus A 13 (+13)
Fusarium oxysporum species complex 11 (+11)
Human respiratory syncytial virus B 5 (+5)
Bacillus subtilis 4 (+4)
NCBITaxon:1392869 4 (+4)
organism 0 (-24)
Mus musculus domesticus 0 (-1026)

Gene Interactions By Source

Production Query

Dev Query

source count
Total 3764850 (+114736)
https://data.monarchinitiative.org/ttl/string.ttl 2982400 (+2396)
https://data.monarchinitiative.org/ttl/biogrid.ttl 931518 (+154714)
Other 0 (0)

Publication Genotype By Source

Production Query

Dev Query

source count
Total 127930 (-201093)
https://data.monarchinitiative.org/ttl/mgi.ttl 79480 (+79480)
https://data.monarchinitiative.org/ttl/zfin.ttl 28888 (-17)
https://data.monarchinitiative.org/ttl/coriell.ttl 10395 (+95)
https://data.monarchinitiative.org/ttl/go.ttl 9167 (+157)
https://data.monarchinitiative.org/ttl/flybase.ttl 0 (-280808)
Other 0 (0)

Gene Anatomy By Taxa

Production Query

Dev Query

source count
Total 1862905 (+4434)
Mus musculus 550723 (+120737)
Homo sapiens 532408 (+4398)
Danio rerio 367207 (-20)
Drosophila melanogaster 197522 (-219)
Rattus norvegicus 142624 (0)
Caenorhabditis elegans 71613 (-95)
Human immunodeficiency virus 1 100 (+100)
Escherichia coli 80 (+80)
Hepacivirus C 60 (+60)
Candida albicans 40 (+40)
HIV-1 M:C_ETH2220 40 (+40)
Jaagsiekte sheep retrovirus 40 (+40)
Hepatitis B virus 40 (+40)
Mammalian orthoreovirus 3 Dearing 20 (+20)
Fusarium oxysporum species complex 20 (+20)
NCBITaxon:1086030 20 (+20)
Bacillus subtilis 20 (+20)
Vaccinia virus 20 (+20)
NCBITaxon:1322345 20 (+20)
Influenzavirus A 20 (+20)
NCBITaxon:387139 20 (+20)
Influenza A virus (A/chicken/Guangdong/1/2001(H5N1)) 20 (+20)
Hepatitis C virus subtype 2a 20 (+20)
NCBITaxon:528354 20 (+20)
Dengue virus group 20 (+20)
NCBITaxon:536056 20 (+20)
HIV-1 M:B_HXB2R 20 (+20)
Staphylococcus aureus subsp. aureus 20 (+20)
Human respiratory syncytial virus B 20 (+20)
Human alphaherpesvirus 1 20 (+20)
Hepatitis C virus subtype 1b 20 (+20)
Human gammaherpesvirus 4 20 (+20)
NCBITaxon:1392869 20 (+20)
Streptococcus pneumoniae 8 (+8)
Other 0 (0)
Mus musculus domesticus 0 (-121175)

Publication Variant By Source

Production Query

Dev Query

source count
Total 5410473 (-2741014)
https://data.monarchinitiative.org/ttl/ncbigene.ttl 4299396 (+130528)
https://data.monarchinitiative.org/ttl/animalqtldb.ttl 250257 (+785)
https://data.monarchinitiative.org/ttl/mgi.ttl 155924 (+155920)
https://data.monarchinitiative.org/ttl/clinvar.nt 155276 (+155276)
https://data.monarchinitiative.org/ttl/flybase.ttl 151798 (-3531815)
https://data.monarchinitiative.org/ttl/gwascatalog.ttl 115241 (+33279)
https://data.monarchinitiative.org/ttl/wormbase.ttl 107268 (+43753)
https://data.monarchinitiative.org/ttl/zfin.ttl 69249 (+1299)
https://data.monarchinitiative.org/ttl/omim.ttl 43518 (+694)
https://data.monarchinitiative.org/ttl/coriell.ttl 38373 (+260)
https://data.monarchinitiative.org/ttl/hgnc.ttl 32415 (+570)
https://data.monarchinitiative.org/ttl/go.ttl 29181 (+864)
https://data.monarchinitiative.org/ttl/mgi_slim.ttl 7609 (+59)
https://data.monarchinitiative.org/ttl/kegg.ttl 6192 (+145)
https://data.monarchinitiative.org/ttl/omia.ttl 5191 (0)
https://data.monarchinitiative.org/ttl/impc.ttl 4580 (+4580)
https://data.monarchinitiative.org/ttl/mmrrc.ttl 1606 (-19)
https://data.monarchinitiative.org/ttl/ctd.ttl 1399 (+1359)
https://data.monarchinitiative.org/ttl/biogrid.ttl 555 (+35)
https://data.monarchinitiative.org/ttl/hpoa.ttl 120 (+120)
https://data.monarchinitiative.org/ttl/sgd.ttl 29 (0)
https://data.monarchinitiative.org/ttl/clinvar.ttl 0 (-149825)
Other 0 (0)

Genotype Phenotype Associations By Taxa

Production Query

Dev Query

species count
Total 560622 (-400490)
Mus musculus 358852 (+6006)
Danio rerio 107131 (+5202)
Homo sapiens 75564 (+1160)
organism 17500 (+449)
sequence_alteration 1520 (+1520)
Mus musculus molossinus 13 (0)
Mus musculus castaneus 12 (0)
NCBITaxon:477815 12 (0)
NCBITaxon:10102 8 (0)
Mus 4 (0)
Mus musculus musculus 3 (-11)
Mus spretus 2 (0)
Mus musculus bactrianus 1 (0)
Drosophila melanogaster 0 (-412276)
Mus musculus domesticus 0 (-2540)
Other 0 (0)

Publication Phenotype By Source

Production Query

Dev Query

source count
Total 5096413 (-1186435)
https://data.monarchinitiative.org/ttl/ncbigene.ttl 4175822 (+130786)
https://data.monarchinitiative.org/ttl/go.ttl 1038500 (+229170)
https://data.monarchinitiative.org/ttl/biogrid.ttl 338834 (+21063)
https://data.monarchinitiative.org/ttl/flybase.ttl 96829 (-1892315)
https://data.monarchinitiative.org/ttl/sgd.ttl 86732 (0)
https://data.monarchinitiative.org/ttl/zfin.ttl 70503 (+168)
https://data.monarchinitiative.org/ttl/gwascatalog.ttl 61372 (+60463)
https://data.monarchinitiative.org/ttl/mgi.ttl 57869 (+46699)
https://data.monarchinitiative.org/ttl/clinvar.nt 52824 (+52824)
https://data.monarchinitiative.org/ttl/wormbase.ttl 37087 (+8560)
https://data.monarchinitiative.org/ttl/mgi_slim.ttl 31983 (+273)
https://data.monarchinitiative.org/ttl/omim.ttl 28489 (+876)
https://data.monarchinitiative.org/ttl/hgnc.ttl 28025 (+403)
https://data.monarchinitiative.org/ttl/ctd.ttl 24111 (+428)
https://data.monarchinitiative.org/ttl/zfinslim.ttl 13191 (+600)
https://data.monarchinitiative.org/ttl/mmrrc.ttl 7505 (+5268)
https://data.monarchinitiative.org/ttl/impc.ttl 4630 (+4491)
https://data.monarchinitiative.org/ttl/animalqtldb.ttl 4613 (0)
https://data.monarchinitiative.org/ttl/rgd.ttl 184 (+11)
https://data.monarchinitiative.org/ttl/hpoa.ttl 4 (0)
Other 0 (0)
https://data.monarchinitiative.org/ttl/clinvar.ttl 0 (-51789)

Genotype Phenotype Associations By Source

Production Query

Dev Query

source count
Total 560622 (-400490)
https://data.monarchinitiative.org/ttl/mgi.ttl 338521 (+4853)
https://data.monarchinitiative.org/ttl/zfin.ttl 107131 (+17201)
https://data.monarchinitiative.org/ttl/coriell.ttl 75564 (+1160)
https://data.monarchinitiative.org/ttl/hpoa.ttl 75561 (+1160)
https://data.monarchinitiative.org/ttl/impc.ttl 28433 (0)
https://data.monarchinitiative.org/ttl/mpd.ttl 10963 (+578)
https://data.monarchinitiative.org/ttl/mgi_slim.ttl 10 (0)
https://data.monarchinitiative.org/ttl/go.ttl 0 (-12006)
https://data.monarchinitiative.org/ttl/flybase.ttl 0 (-412276)
Other 0 (0)

Variant Phenotype Associations By Taxa

Production Query

Dev Query

species count
Total 3574215 (+62974)
Homo sapiens 2134051 (+248135)
organism 446655 (-184838)
Mus musculus 413239 (+57967)
Caenorhabditis elegans 193000 (+101939)
Bos taurus 125205 (+7)
Drosophila melanogaster 111499 (-99292)
Danio rerio 93521 (+1466)
Sus scrofa 34559 (0)
Gallus gallus 13529 (+190)
Ovis aries 1519 (+26)
sequence_alteration 1305 (+1305)
Equus caballus 1009 (+2)
Drosophila hydei 644 (+644)
Drosophila subobscura 596 (+596)
Drosophila virilis 592 (+592)
Drosophila ananassae 398 (+398)
Drosophila pseudoobscura pseudoobscura 321 (+321)
Drosophila simulans 279 (+279)
Drosophila willistoni 251 (+251)
Drosophila funebris 228 (+228)
NCBITaxon:40372 206 (+206)
NCBITaxon:7257 156 (+156)
NCBITaxon:30019 142 (+142)
Drosophila immigrans 108 (+108)
NCBITaxon:95109 100 (+100)
NCBITaxon:30033 95 (+95)
Drosophila mauritiana 76 (+76)
NCBITaxon:7246 76 (+76)
NCBITaxon:7300 71 (+71)
NCBITaxon:30042 68 (+68)
Drosophila buzzatii 67 (+67)
Drosophila miranda 65 (+65)
Drosophila paulistorum 60 (+60)
NCBITaxon:76712 52 (+52)
Drosophila littoralis 45 (+45)
Drosophila persimilis 39 (+39)
NCBITaxon:7218 35 (+35)
Drosophila mojavensis 34 (+34)
Drosophila ambigua 28 (+28)
Saccharomyces cerevisiae S288C 23 (0)
NCBITaxon:193351 22 (+22)
Drosophila auraria 18 (+18)
NCBITaxon:125945 18 (+18)
NCBITaxon:7282 14 (+14)
NCBITaxon:7283 13 (+13)
NCBITaxon:64960 11 (+11)
NCBITaxon:42026 10 (+10)
NCBITaxon:46794 10 (+10)
NCBITaxon:30036 9 (+9)
Drosophila sechellia 9 (+9)
NCBITaxon:161732 9 (+9)
Drosophila takahashii 8 (+8)
NCBITaxon:169138 7 (+7)
NCBITaxon:47314 7 (+7)
NCBITaxon:30043 7 (+7)
NCBITaxon:94111 6 (+6)
NCBITaxon:7291 5 (+5)
NCBITaxon:30023 4 (+4)
NCBITaxon:30028 4 (+4)
NCBITaxon:69217 4 (+4)
Drosophila eugracilis 4 (+4)
NCBITaxon:40844 4 (+4)
NCBITaxon:46822 4 (+4)
NCBITaxon:7252 3 (+3)
Drosophila equinoxialis 3 (+3)
NCBITaxon:198721 3 (+3)
NCBITaxon:103846 3 (+3)
Drosophila pseudoobscura bogotana 3 (+3)
NCBITaxon:218680 3 (+3)
Drosophila erecta 2 (+2)
NCBITaxon:7297 2 (+2)
NCBITaxon:7279 2 (+2)
NCBITaxon:133978 2 (+2)
NCBITaxon:7271 2 (+2)
NCBITaxon:7270 2 (+2)
NCBITaxon:195057 2 (+2)
Drosophila madeirensis 2 (+2)
Drosophila arizonae 2 (+2)
NCBITaxon:42062 2 (+2)
NCBITaxon:134002 2 (+2)
NCBITaxon:30056 2 (+2)
NCBITaxon:57910 2 (+2)
NCBITaxon:30029 2 (+2)
Drosophila yakuba 2 (+2)
Scaptodrosophila lebanonensis 2 (+2)
NCBITaxon:133981 2 (+2)
NCBITaxon:141217 2 (+2)
NCBITaxon:76946 2 (+2)
Drosophila lutescens 1 (+1)
NCBITaxon:66368 1 (+1)
NCBITaxon:7231 1 (+1)
NCBITaxon:310057 1 (+1)
Other 1 (-182)
NCBITaxon:7284 1 (+1)
Mus musculus domesticus 0 (-68851)

Gene Phenotype Associations By Taxa

Production Query

Dev Query

species count
Total 675390 (-47323)
Mus musculus 212671 (+10833)
Homo sapiens 196666 (+65692)
Caenorhabditis elegans 76789 (+22926)
Saccharomyces cerevisiae S288C 68224 (-6)
Danio rerio 56008 (-661)
Drosophila melanogaster 49114 (-146961)
organism 10484 (+4425)
Rattus norvegicus 494 (+33)
Canis lupus familiaris 460 (-16)
Drosophila hydei 452 (+452)
Drosophila subobscura 373 (+373)
Drosophila virilis 337 (+337)
Drosophila ananassae 246 (+246)
Drosophila simulans 204 (+204)
Drosophila pseudoobscura pseudoobscura 203 (+203)
Drosophila willistoni 186 (+186)
Escherichia coli 167 (+167)
Bos taurus 160 (-3)
NCBITaxon:7257 153 (+153)
Drosophila funebris 132 (+132)
Felis catus 128 (-4)
NCBITaxon:30019 124 (+124)
Hepacivirus C 124 (+124)
NCBITaxon:40372 118 (+118)
NCBITaxon:30033 82 (+82)
NCBITaxon:95109 82 (+82)
Drosophila immigrans 72 (+72)
Hepatitis C virus subtype 2a 69 (+69)
NCBITaxon:7300 69 (+69)
NCBITaxon:7246 63 (+63)
NCBITaxon:30042 56 (+56)
Ovis aries 55 (-2)
Drosophila buzzatii 55 (+55)
Drosophila mauritiana 52 (+52)
Drosophila paulistorum 49 (+49)
Drosophila miranda 43 (+43)
Human immunodeficiency virus 1 43 (+43)
Drosophila littoralis 34 (+34)
NCBITaxon:7218 33 (+33)
Equus caballus 31 (0)
Sus scrofa 30 (-1)
Drosophila ambigua 27 (+27)
NCBITaxon:193351 22 (+22)
Gallus gallus 19 (0)
Capra hircus 17 (-1)
Phoenicopterus ruber 17 (0)
NCBITaxon:125945 15 (+15)
NCBITaxon:76712 14 (+14)
Drosophila persimilis 14 (+14)
NCBITaxon:7282 13 (+13)
NCBITaxon:7283 13 (+13)
Drosophila mojavensis 12 (+12)
Drosophila auraria 11 (+11)
NCBITaxon:64960 11 (+11)
Jaagsiekte sheep retrovirus 10 (+10)
Mustela putorius furo 10 (0)
NCBITaxon:46794 10 (+10)
Oryctolagus cuniculus 10 (0)
Drosophila sechellia 9 (+9)
Vaccinia virus 9 (+9)
HIV-1 M:B_HXB2R 9 (+9)
Influenza A virus (A/chicken/Guangdong/1/2001(H5N1)) 7 (+7)
NCBITaxon:169138 7 (+7)
NCBITaxon:30043 7 (+7)
NCBITaxon:47314 6 (+6)
NCBITaxon:42026 6 (+6)
NCBITaxon:161732 6 (+6)
Hepatitis B virus 5 (+5)
Staphylococcus aureus subsp. aureus 5 (+5)
Influenzavirus A 4 (+4)
NCBITaxon:30028 4 (+4)
NCBITaxon:69217 4 (+4)
Neovison vison 4 (0)
NCBITaxon:40844 4 (+4)
Macaca mulatta 4 (0)
NCBITaxon:46822 4 (+4)
NCBITaxon:94111 3 (+3)
Drosophila takahashii 3 (+3)
Drosophila equinoxialis 3 (+3)
Mesocricetus auratus 3 (0)
Oryzias latipes 3 (-1)
Drosophila pseudoobscura bogotana 3 (+3)
NCBITaxon:30036 3 (+3)
Meleagris gallopavo 3 (0)
NCBITaxon:218680 3 (+3)
NCBITaxon:7252 3 (+3)
NCBITaxon:198721 3 (+3)
Drosophila erecta 2 (+2)
NCBITaxon:7270 2 (+2)
NCBITaxon:133981 2 (+2)
NCBITaxon:30023 2 (+2)
NCBITaxon:195057 2 (+2)
NCBITaxon:133978 2 (+2)
NCBITaxon:7271 2 (+2)
NCBITaxon:7291 2 (+2)
Drosophila madeirensis 2 (+2)
Drosophila arizonae 2 (+2)
Drosophila eugracilis 2 (+2)
NCBITaxon:42062 2 (+2)
NCBITaxon:134002 2 (+2)
NCBITaxon:30029 2 (+2)
Vulpes vulpes 2 (0)
Scaptodrosophila lebanonensis 2 (+2)
Bubalus bubalis 2 (0)
NCBITaxon:141217 2 (+2)
NCBITaxon:76946 2 (+2)
NCBITaxon:66368 1 (+1)
Sciurus carolinensis 1 (0)
Bacillus subtilis 1 (+1)
Numida meleagris 1 (0)
NCBITaxon:7297 1 (+1)
NCBITaxon:7279 1 (+1)
NCBITaxon:310057 1 (+1)
Hepatitis C virus subtype 1b 1 (+1)
Human gammaherpesvirus 4 1 (+1)
NCBITaxon:103846 1 (+1)
Vulpes lagopus 1 (0)
NCBITaxon:27706 1 (0)
Mammuthus primigenius 1 (0)
NCBITaxon:9690 1 (0)
Ursus americanus 1 (0)
Drosophila lutescens 1 (+1)
Drosophila yakuba 1 (+1)
Peromyscus polionotus 1 (0)
NCBITaxon:32536 1 (0)
Panthera tigris tigris 1 (0)
NCBITaxon:7231 1 (+1)
NCBITaxon:30056 1 (+1)
NCBITaxon:38666 1 (0)
NCBITaxon:1392869 1 (+1)
NCBITaxon:57910 1 (+1)
NCBITaxon:43597 1 (0)
NCBITaxon:61402 1 (0)
Bos grunniens 1 (0)
NCBITaxon:528354 1 (+1)
Dengue virus group 1 (+1)
NCBITaxon:87177 1 (0)
NCBITaxon:68352 1 (0)
NCBITaxon:70340 1 (0)
Coturnix japonica 1 (0)
NCBITaxon:7284 1 (+1)
Mus musculus domesticus 0 (-7540)
Other 0 (0)

Disease Phenotype Associations By Taxa

Production Query

Dev Query

species count
Total 155914 (+9894)
Other 145516 (-488)
Homo sapiens 10398 (+10382)

Gene Disease Causal Associations By Source

Production Query

Dev Query

species count
Total 10337 (+205)
https://data.monarchinitiative.org/ttl/orphanet.ttl 6124 (+89)
https://data.monarchinitiative.org/ttl/clinvar.nt 5588 (+5588)
https://data.monarchinitiative.org/ttl/kegg.ttl 5307 (-1)
https://data.monarchinitiative.org/ttl/omim.ttl 5228 (-6)
https://data.monarchinitiative.org/ttl/ctd.ttl 4921 (-5)
https://data.monarchinitiative.org/ttl/omia.ttl 725 (0)
https://data.monarchinitiative.org/ttl/mgi.ttl 11 (0)
https://data.monarchinitiative.org/ttl/gwascatalog.ttl 8 (+7)
https://data.monarchinitiative.org/ttl/mgi_slim.ttl 7 (+1)
https://data.monarchinitiative.org/ttl/mmrrc.ttl 3 (0)
https://data.monarchinitiative.org/ttl/impc.ttl 1 (0)
https://data.monarchinitiative.org/ttl/clinvar.ttl 0 (-5512)
Other 0 (0)

Gene Disease Non-causal Associations By Taxa

Production Query

Dev Query

species count
Total 33808 (+16313)
Homo sapiens 33387 (+16209)
Mus musculus 215 (+10)
Rattus norvegicus 34 (+2)
Drosophila melanogaster 33 (-1)
Escherichia coli 32 (+32)
Danio rerio 24 (0)
Hepacivirus C 24 (+24)
Sus scrofa 5 (0)
Human immunodeficiency virus 1 5 (+5)
NCBITaxon:1322345 5 (+5)
Vaccinia virus 5 (+5)
Hepatitis C virus subtype 2a 5 (+5)
Caenorhabditis elegans 4 (0)
Bos taurus 4 (0)
HIV-1 M:C_ETH2220 3 (+3)
NCBITaxon:387139 3 (+3)
Xenopus (Silurana) tropicalis 2 (+1)
Influenzavirus A 2 (+2)
NCBITaxon:528354 2 (+2)
Gallus gallus 2 (0)
Hepatitis B virus 2 (+2)
HIV-1 M:B_HXB2R 2 (+2)
Staphylococcus aureus subsp. aureus 2 (+2)
Human respiratory syncytial virus B 2 (+2)
Human gammaherpesvirus 4 2 (+2)
Influenza A virus (A/chicken/Guangdong/1/2001(H5N1)) 1 (+1)
NCBITaxon:1392869 1 (+1)
Other 0 (0)
Canis lupus familiaris 0 (-1)
Mus musculus domesticus 0 (-5)

Gene Phenotype Associations By Source

Production Query

Dev Query

source count
Total 675390 (-47323)
https://data.monarchinitiative.org/ttl/mgi_slim.ttl 209417 (+3647)
https://data.monarchinitiative.org/ttl/hpoa.ttl 148647 (+17693)
https://data.monarchinitiative.org/ttl/orphanet.ttl 111894 (+14108)
https://data.monarchinitiative.org/ttl/clinvar.nt 96592 (+96592)
https://data.monarchinitiative.org/ttl/omim.ttl 86440 (+7846)
https://data.monarchinitiative.org/ttl/wormbase.ttl 76789 (+23072)
https://data.monarchinitiative.org/ttl/sgd.ttl 68224 (0)
https://data.monarchinitiative.org/ttl/zfinslim.ttl 61902 (+8468)
https://data.monarchinitiative.org/ttl/flybase.ttl 57210 (-138865)
https://data.monarchinitiative.org/ttl/gwascatalog.ttl 48988 (+48983)
https://data.monarchinitiative.org/ttl/impc.ttl 17417 (0)
https://data.monarchinitiative.org/ttl/mgi.ttl 16087 (0)
https://data.monarchinitiative.org/ttl/coriell.ttl 7151 (+286)
https://data.monarchinitiative.org/ttl/mmrrc.ttl 5164 (+50)
https://data.monarchinitiative.org/ttl/omia.ttl 981 (-28)
https://data.monarchinitiative.org/ttl/monarch.ttl 960 (-28)
https://data.monarchinitiative.org/ttl/rgd.ttl 489 (+33)
https://data.monarchinitiative.org/ttl/go.ttl 0 (-9775)
Other 0 (0)
https://data.monarchinitiative.org/ttl/zfin.ttl 0 (-8943)
https://data.monarchinitiative.org/ttl/clinvar.ttl 0 (-89034)

Publication Gene By Source

Production Query

Dev Query

source count
Total 5096413 (-1186435)
https://data.monarchinitiative.org/ttl/ncbigene.ttl 4175822 (+130786)
https://data.monarchinitiative.org/ttl/go.ttl 1038500 (+229170)
https://data.monarchinitiative.org/ttl/biogrid.ttl 338834 (+21063)
https://data.monarchinitiative.org/ttl/flybase.ttl 96829 (-1892315)
https://data.monarchinitiative.org/ttl/sgd.ttl 86732 (0)
https://data.monarchinitiative.org/ttl/zfin.ttl 70503 (+168)
https://data.monarchinitiative.org/ttl/gwascatalog.ttl 61372 (+60463)
https://data.monarchinitiative.org/ttl/mgi.ttl 57869 (+46699)
https://data.monarchinitiative.org/ttl/clinvar.nt 52824 (+52824)
https://data.monarchinitiative.org/ttl/wormbase.ttl 37087 (+8560)
https://data.monarchinitiative.org/ttl/mgi_slim.ttl 31983 (+273)
https://data.monarchinitiative.org/ttl/omim.ttl 28489 (+876)
https://data.monarchinitiative.org/ttl/hgnc.ttl 28025 (+403)
https://data.monarchinitiative.org/ttl/ctd.ttl 24111 (+428)
https://data.monarchinitiative.org/ttl/zfinslim.ttl 13191 (+600)
https://data.monarchinitiative.org/ttl/mmrrc.ttl 7505 (+5268)
https://data.monarchinitiative.org/ttl/impc.ttl 4630 (+4491)
https://data.monarchinitiative.org/ttl/animalqtldb.ttl 4613 (0)
https://data.monarchinitiative.org/ttl/rgd.ttl 184 (+11)
https://data.monarchinitiative.org/ttl/hpoa.ttl 4 (0)
Other 0 (0)
https://data.monarchinitiative.org/ttl/clinvar.ttl 0 (-51789)

Variant Genotype Associations By Source

Production Query

Dev Query

source count
Total 826592 (-858977)
https://data.monarchinitiative.org/ttl/mmrrc.ttl 369418 (+1244)
https://data.monarchinitiative.org/ttl/mgi.ttl 277370 (+6191)
https://data.monarchinitiative.org/ttl/zfin.ttl 161213 (+7851)
https://data.monarchinitiative.org/ttl/impc.ttl 72181 (+237)
https://data.monarchinitiative.org/ttl/coriell.ttl 7276 (+10)
https://data.monarchinitiative.org/ttl/udp.ttl 112 (0)
https://data.monarchinitiative.org/ttl/flybase.ttl 0 (-873495)
Other 0 (0)

Model Disease Associations By Source

Production Query

Dev Query

source count
Total 26434 (-34)
https://data.monarchinitiative.org/ttl/coriell.ttl 12024 (+41)
https://data.monarchinitiative.org/ttl/mgi.ttl 7975 (+171)
https://data.monarchinitiative.org/ttl/wormbase.ttl 3328 (+291)
https://data.monarchinitiative.org/ttl/flybase.ttl 1207 (-594)
https://data.monarchinitiative.org/ttl/zfin.ttl 967 (+57)
https://data.monarchinitiative.org/ttl/omia.ttl 933 (0)
Other 0 (0)

Case Gene By Source

Production Query

Dev Query

source count
Total 1292 (+26)
https://data.monarchinitiative.org/ttl/coriell.ttl 1290 (+28)
https://data.monarchinitiative.org/ttl/omim.ttl 1267 (+3)
https://data.monarchinitiative.org/ttl/gwascatalog.ttl 127 (+127)
https://data.monarchinitiative.org/ttl/udp.ttl 2 (-2)
Other 0 (0)

Gene Function By Taxa

Production Query

Dev Query

source count
Total 1893761 (+431194)
Mus musculus 341851 (+5702)
Homo sapiens 314675 (+1154)
Rattus norvegicus 294395 (+3348)
Danio rerio 171877 (-3436)
Sus scrofa 137519 (+116004)
Gallus gallus 123144 (+106974)
Bos taurus 121711 (+100591)
Canis lupus familiaris 116201 (+96039)
Caenorhabditis elegans 101391 (+5353)
Drosophila melanogaster 100344 (+602)
Saccharomyces cerevisiae S288C 68899 (+168)
Human immunodeficiency virus 1 343 (+343)
Escherichia coli 184 (+184)
Vaccinia virus 169 (+169)
HIV-1 M:C_ETH2220 138 (+138)
Hepacivirus C 128 (+128)
Hepatitis C virus subtype 2a 95 (+95)
NCBITaxon:528354 76 (+76)
Jaagsiekte sheep retrovirus 68 (+68)
Staphylococcus aureus subsp. aureus 62 (+62)
Dengue virus group 55 (+55)
Human gammaherpesvirus 4 47 (+47)
Mammalian orthoreovirus 3 Dearing 46 (+46)
Hepatitis B virus 41 (+41)
Human alphaherpesvirus 1 40 (+40)
Candida albicans 31 (+31)
NCBITaxon:1086030 29 (+29)
NCBITaxon:387139 29 (+29)
HIV-1 M:B_HXB2R 29 (+29)
Influenza A virus (A/chicken/Guangdong/1/2001(H5N1)) 22 (+22)
Bacillus subtilis 20 (+20)
NCBITaxon:1322345 20 (+20)
Human respiratory syncytial virus B 18 (+18)
Hepatitis C virus subtype 1b 18 (+18)
Influenzavirus A 16 (+16)
Fusarium oxysporum species complex 8 (+8)
NCBITaxon:1392869 8 (+8)
Streptococcus pneumoniae 7 (+7)
NCBITaxon:536056 7 (+7)
Other 0 (0)
organism 0 (-878)
Mus musculus domesticus 0 (-2181)

Model Disease Associations By Taxa

Production Query

Dev Query

species count
Total 26434 (-34)
Homo sapiens 12021 (+41)
Mus musculus 7856 (+658)
Caenorhabditis elegans 3328 (+291)
Drosophila melanogaster 1207 (-594)
Danio rerio 965 (+57)
Carnivora 684 (0)
Ruminantia 144 (0)
organism 98 (+1)
Felidae 55 (0)
Equidae 34 (0)
sequence_alteration 18 (+18)
Suidae 5 (0)
Sus 5 (0)
Bos taurus 3 (0)
Gallus gallus 3 (0)
Bovidae 2 (0)
Other 2 (0)
NCBITaxon:477815 2 (0)
Viridiplantae 1 (0)
Mus musculus castaneus 1 (0)
Mus musculus musculus 0 (-2)
Mus musculus domesticus 0 (-504)

Case Model By Source

Production Query

Dev Query

source count
Total 29866 (+59)
https://data.monarchinitiative.org/ttl/coriell.ttl 29866 (+59)
Other 0 (0)

Gene Pathway By Taxa

Production Query

Dev Query

source count
Total 306816 (-9857)
Homo sapiens 142033 (+205)
Mus musculus 26978 (+947)
Rattus norvegicus 23563 (+19)
Canis lupus familiaris 19579 (-583)
Sus scrofa 19468 (-2047)
Danio rerio 19119 (-7123)
Bos taurus 18811 (-2309)
Gallus gallus 13867 (-2303)
Drosophila melanogaster 11514 (+795)
Caenorhabditis elegans 11345 (+3206)
Escherichia coli 80 (+80)
HIV-1 M:C_ETH2220 74 (+74)
Hepatitis C virus subtype 2a 73 (+73)
Human immunodeficiency virus 1 65 (+65)
Human gammaherpesvirus 4 35 (+35)
Hepacivirus C 34 (+34)
NCBITaxon:528354 24 (+24)
Jaagsiekte sheep retrovirus 24 (+24)
Mammalian orthoreovirus 3 Dearing 20 (+20)
Vaccinia virus 20 (+20)
Human alphaherpesvirus 1 20 (+20)
Staphylococcus aureus subsp. aureus 12 (+12)
Influenzavirus A 7 (+7)
Candida albicans 6 (+6)
NCBITaxon:1086030 5 (+5)
NCBITaxon:1322345 5 (+5)
Influenza A virus (A/chicken/Guangdong/1/2001(H5N1)) 5 (+5)
Streptococcus pneumoniae 5 (+5)
NCBITaxon:536056 5 (+5)
Hepatitis B virus 5 (+5)
Dengue virus group 4 (+4)
Bacillus subtilis 3 (+3)
Human respiratory syncytial virus B 3 (+3)
NCBITaxon:1392869 3 (+3)
NCBITaxon:387139 2 (+2)
Other 0 (0)
organism 0 (-878)
Mus musculus domesticus 0 (-325)

Gene Disease Non-Causal Associations By Source

Production Query

Dev Query

species count
Total 33808 (+16313)
https://data.monarchinitiative.org/ttl/gwascatalog.ttl 16811 (+16570)
https://data.monarchinitiative.org/ttl/ctd.ttl 16184 (+224)
https://data.monarchinitiative.org/ttl/orphanet.ttl 1188 (+5)
https://data.monarchinitiative.org/ttl/omim.ttl 740 (-42)
https://data.monarchinitiative.org/ttl/kegg.ttl 534 (-76)
https://data.monarchinitiative.org/ttl/clinvar.nt 344 (+344)
https://data.monarchinitiative.org/ttl/coriell.ttl 36 (+1)
https://data.monarchinitiative.org/ttl/udp.ttl 2 (-2)
https://data.monarchinitiative.org/ttl/clinvar.ttl 0 (-388)
Other 0 (0)

Case Phenotype By Source

Production Query

Dev Query

source count
Total 1085 (0)
https://data.monarchinitiative.org/ttl/udp.ttl 1076 (0)
https://data.monarchinitiative.org/ttl/coriell.ttl 9 (0)
Other 0 (0)

Pathway Phenotype By Source

Production Query

Dev Query

source count
Total 96966 (+1264)
https://data.monarchinitiative.org/ttl/hpoa.ttl 89014 (+2804)
https://data.monarchinitiative.org/ttl/coriell.ttl 89014 (+2804)
https://data.monarchinitiative.org/ttl/omim.ttl 88945 (+2735)
https://data.monarchinitiative.org/ttl/ctd.ttl 86894 (+2726)
https://data.monarchinitiative.org/ttl/reactome.ttl 33356 (-529)
https://data.monarchinitiative.org/ttl/animalqtldb.ttl 7952 (-1540)
https://data.monarchinitiative.org/ttl/gwascatalog.ttl 7493 (+7493)
https://data.monarchinitiative.org/ttl/orphanet.ttl 884 (+468)
Other 0 (0)

Case Genotype By Source

Production Query

Dev Query

source count
Total 3840 (+17)
https://data.monarchinitiative.org/ttl/coriell.ttl 3807 (+17)
https://data.monarchinitiative.org/ttl/udp.ttl 33 (0)
Other 0 (0)

Variant Disease Associations By Source

Production Query

Dev Query

source count
Total 113322 (+8689)
https://data.monarchinitiative.org/ttl/clinvar.nt 77731 (+77731)
https://data.monarchinitiative.org/ttl/gwascatalog.ttl 33331 (+4607)
https://data.monarchinitiative.org/ttl/coriell.ttl 1028 (+3)
https://data.monarchinitiative.org/ttl/omim.ttl 1011 (-25)
https://data.monarchinitiative.org/ttl/udp.ttl 110 (0)
https://data.monarchinitiative.org/ttl/ctd.ttl 43 (0)
https://data.monarchinitiative.org/ttl/hpoa.ttl 35 (+35)
https://data.monarchinitiative.org/ttl/mgi.ttl 30 (0)
https://data.monarchinitiative.org/ttl/orphanet.ttl 3 (0)
https://data.monarchinitiative.org/ttl/mgi_slim.ttl 3 (0)
https://data.monarchinitiative.org/ttl/impc.ttl 1 (0)
https://data.monarchinitiative.org/ttl/clinvar.ttl 0 (-73667)
Other 0 (0)

Gene Homology By Subject Taxa

Production Query

Dev Query

source count
Total 7881245 (+1100044)
Mus musculus 1041581 (+70907)
Danio rerio 921927 (+94080)
Rattus norvegicus 827150 (+50029)
Caenorhabditis elegans 678047 (+65827)
Sus scrofa 614943 (+27665)
Homo sapiens 613532 (+52862)
Drosophila melanogaster 421371 (+60972)
Canis lupus familiaris 360894 (+360894)
Bos taurus 350263 (+26139)
Equus caballus 323831 (+25400)
Xenopus (Silurana) tropicalis 283761 (+24292)
Gallus gallus 277402 (+30730)
Pan troglodytes 211245 (+14601)
Monodelphis domestica 199203 (+13617)
Macaca mulatta 186173 (+13149)
Felis catus 179290 (+179290)
Anolis carolinensis 175165 (+12537)
Arabidopsis thaliana 113918 (-24478)
Saccharomyces cerevisiae S288C 82624 (+12229)
Ornithorhynchus anatinus 17384 (+1071)
organism 334 (0)
Human alphaherpesvirus 1 146 (+146)
Human immunodeficiency virus 1 143 (+143)
Escherichia coli 133 (+133)
Hepacivirus C 80 (+80)
Candida albicans 76 (+76)
Hepatitis B virus 62 (+62)
Dengue virus group 61 (+61)
NCBITaxon:1322345 58 (+58)
Hepatitis C virus subtype 2a 44 (+44)
Hepatitis C virus subtype 1b 41 (+41)
HIV-1 M:C_ETH2220 41 (+41)
Vaccinia virus 41 (+41)
NCBITaxon:1392869 35 (+35)
Influenzavirus A 31 (+31)
Jaagsiekte sheep retrovirus 30 (+30)
Bacillus subtilis 28 (+28)
Human respiratory syncytial virus B 28 (+28)
NCBITaxon:387139 21 (+21)
Human gammaherpesvirus 4 18 (+18)
Staphylococcus aureus subsp. aureus 18 (+18)
HIV-1 M:B_HXB2R 16 (+16)
Fusarium oxysporum species complex 15 (+15)
Influenza A virus (A/chicken/Guangdong/1/2001(H5N1)) 12 (+12)
Mammalian orthoreovirus 3 Dearing 10 (+10)
NCBITaxon:528354 10 (+10)
NCBITaxon:1086030 9 (+9)
Mus musculus domesticus 0 (-12976)
Other 0 (0)

SciGraph Queries

Gene Variant Mix-ups

Production Query

Dev Query

field count
variant 5179 (-5)

Sequence Features

Production Query

Dev Query

field count
features 7414471 (-1843038)

Variant Loci

Production Query

Dev Query

field count
variants 863816 (-3274)

Disease Phenotype Mix-ups

Production Query

Dev Query

field count
disease 131 (+3)

Genotypes

Production Query

Dev Query

field count
genotypes 335901 (-441910)

Genes

Production Query

Dev Query

field count
genes 1836464 (-663394)

Reagent Targeted Gene

Production Query

Dev Query

field count
rtg 106222 (-138446)

Genes in more than one taxa

Production Query

Dev Query

field count
request timeout 0

Gene Disease Mix-ups

Production Query

Dev Query

field count
gene 114 (+114)

nodes with subClassOf cycles (depth 2)

Production Query

Dev Query

field count
node_count 2 (+1)

nodes with subClassOf cycles (depth 1)

Production Query

Dev Query

field count
node_count 127 (+126)

Number of edges connected to owl:Nothing

Production Query

Dev Query

field count
nothing 0 (0)