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    uri: biolink:model_of
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    total_number: 2047
    uri: biolink:expressed_in
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    - WB
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    name: pombase_gene_nodes
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    total_number: 1207284
    uri: biolink:interacts_with
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  name: clinvar_variant_edges
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    name: clingen_variant_nodes
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    total_number: 127
  - categories:
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    name: clinvar_variant_nodes
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    total_number: 53
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    total_number: 594
    uri: biolink:is_sequence_variant_of
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  name: ctd_chemical_to_disease_edges
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    name: phenio_nodes
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    total_number: 3335
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    missing_subject_namespaces:
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    total_number: 20082
    uri: biolink:treats_or_applied_or_studied_to_treat
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- categories:
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  - biolink:MacromolecularMachineToCellularComponentAssociation
  - biolink:MacromolecularMachineToMolecularActivityAssociation
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  missing_old: 103810
  name: go_annotation_edges
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  - GO
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    - biolink:MolecularActivity
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    name: phenio_nodes
    namespaces:
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    total_number: 16681
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    missing_objects: 0
    missing_subject_namespaces:
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    - PomBase
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    - RNAcentral
    - SGD
    - UniProtKB
    - ZFIN
    missing_subjects: 78749
    total_number: 218740
    uri: biolink:actively_involved_in
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    missing_objects: 0
    missing_subject_namespaces:
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    - RNAcentral
    - UniProtKB
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    total_number: 572
    uri: biolink:acts_upstream_of
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    missing_objects: 0
    missing_subject_namespaces:
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    total_number: 4
    uri: biolink:acts_upstream_of_negative_effect
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    missing_subject_namespaces:
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    - RGD
    - RNAcentral
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    - UniProtKB
    - WB
    missing_subjects: 2029
    total_number: 4151
    uri: biolink:acts_upstream_of_or_within
  - missing_object_namespaces: []
    missing_objects: 0
    missing_subject_namespaces:
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    missing_subjects: 2
    total_number: 3
    uri: biolink:acts_upstream_of_or_within_negative_effect
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    missing_objects: 0
    missing_subject_namespaces:
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    total_number: 4
    uri: biolink:acts_upstream_of_or_within_positive_effect
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    missing_subject_namespaces:
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    total_number: 11
    uri: biolink:acts_upstream_of_positive_effect
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    missing_objects: 0
    missing_subject_namespaces:
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    - RNAcentral
    - UniProtKB
    missing_subjects: 137
    total_number: 183
    uri: biolink:colocalizes_with
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    missing_objects: 0
    missing_subject_namespaces:
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    - RGD
    - RNAcentral
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    missing_subjects: 266
    total_number: 340
    uri: biolink:contributes_to
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    missing_objects: 0
    missing_subject_namespaces:
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    - RNAcentral
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    - SGD
    - UniProtKB
    - WB
    missing_subjects: 66758
    total_number: 120644
    uri: biolink:enables
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    missing_objects: 0
    missing_subject_namespaces:
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    - UniProtKB
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    missing_subjects: 16350
    total_number: 20470
    uri: biolink:is_active_in
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    missing_subject_namespaces:
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    - RNAcentral
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    total_number: 86665
    uri: biolink:located_in
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    missing_subject_namespaces:
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    missing_subjects: 25749
    total_number: 35566
    uri: biolink:part_of
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  name: hpoa_disease_mode_of_inheritance_edges
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  - OMIM
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    missing_subject_namespaces:
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    total_number: 26
    uri: biolink:has_mode_of_inheritance
  total_number: 26
- categories:
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  name: hpoa_disease_to_phenotype_edges
  namespaces:
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  node_types:
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    name: phenio_nodes
    namespaces:
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    total_number: 534
  predicates:
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    missing_objects: 0
    missing_subject_namespaces:
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    total_number: 777
    uri: biolink:has_phenotype
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- categories:
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  name: hpoa_gene_to_disease_edges
  namespaces:
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    name: hgnc_gene_nodes
    namespaces:
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    taxon:
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    total_number: 85
  - categories:
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    name: phenio_nodes
    namespaces:
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    taxon:
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    missing_subject_namespaces:
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    total_number: 63
    uri: biolink:causes
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    missing_subject_namespaces: []
    missing_subjects: 0
    total_number: 14
    uri: biolink:contributes_to
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    missing_subject_namespaces: []
    missing_subjects: 0
    total_number: 21
    uri: biolink:gene_associated_with_condition
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- categories:
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  name: hpoa_gene_to_phenotype_edges
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  node_types:
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    name: phenio_nodes
    namespaces:
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    taxon:
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    total_number: 245
  predicates:
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    missing_subject_namespaces:
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    total_number: 289
    uri: biolink:has_phenotype
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- categories:
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  name: panther_genome_orthologs_edges
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  - MGI
  - NCBIGene
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  - WB
  - Xenbase
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    name: alliance_gene_nodes
    namespaces:
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    - SGD
    - WB
    - Xenbase
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    taxon:
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    total_number: 79099
  - categories:
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    name: dictybase_gene_nodes
    namespaces:
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    taxon:
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    total_number: 5702
  - categories:
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    name: hgnc_gene_nodes
    namespaces:
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    taxon:
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    total_number: 17694
  - categories:
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    namespaces:
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    taxon:
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    total_number: 14877
  - categories:
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    namespaces:
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    taxon:
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    total_number: 15123
  - categories:
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    namespaces:
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    taxon:
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    total_number: 12452
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    missing_subject_namespaces:
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    - WB
    - Xenbase
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- categories:
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  name: pombase_gene_to_phenotype_edges
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    name: phenio_nodes
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    total_number: 1685
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  name: reactome_chemical_to_pathway_edges
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    name: reactome_pathway_nodes
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    total_number: 54
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    name: reactome_pathway_nodes
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    name: alliance_gene_nodes
    namespaces:
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    taxon:
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  - categories:
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    name: ncbi_gene_9031_nodes
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    taxon:
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  - categories:
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    name: ncbi_gene_9615_nodes
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    taxon:
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  - categories:
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    taxon:
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    missing_subject_namespaces:
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    - PomBase
    missing_subjects: 13867
    total_number: 239793
    uri: biolink:interacts_with
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  missing_old: 62
  name: xenbase_gene_to_phenotype_edges
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  - Xenbase
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    name: phenio_nodes
    namespaces:
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    taxon:
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    total_number: 147
  predicates:
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    missing_objects: 0
    missing_subject_namespaces:
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    total_number: 274
    uri: biolink:has_phenotype
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  missing_old: 15358
  name: xenbase_non_entrez_orthologs_edges
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  - MGI
  - OMIM
  - Xenbase
  - ZFIN
  node_types:
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    missing: 26546
    name: alliance_gene_nodes
    namespaces:
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    - ZFIN
    taxon:
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    - NCBITaxon:7955
    total_number: 26546
  - categories:
    - biolink:Gene
    missing: 12395
    name: hgnc_gene_nodes
    namespaces:
    - HGNC
    taxon:
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    total_number: 12395
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    - OMIM
    - ZFIN
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    missing_subject_namespaces:
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    total_number: 44303
    uri: biolink:orthologous_to
  total_number: 44303
- categories:
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  missing: 11623
  missing_old: 11623
  name: xenbase_orthologs_edges
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  - MGI
  - NCBIGene
  - RGD
  - Xenbase
  - ZFIN
  node_types:
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    missing: 14844
    name: alliance_gene_nodes
    namespaces:
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    - RGD
    - Xenbase
    - ZFIN
    taxon:
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    - NCBITaxon:10116
    - NCBITaxon:7955
    - NCBITaxon:8355
    - NCBITaxon:8364
    total_number: 14844
  - categories:
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    name: hgnc_gene_nodes
    namespaces:
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    taxon:
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    total_number: 7662
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    missing_subject_namespaces:
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    total_number: 30560
    uri: biolink:orthologous_to
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- categories:
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  missing_old: 120
  name: zfin_genotype_to_phenotype_edges
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  - ZP
  node_types:
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    name: phenio_nodes
    namespaces:
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    taxon:
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    total_number: 226
  predicates:
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    missing_objects: 0
    missing_subject_namespaces:
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    total_number: 437
    uri: biolink:has_phenotype
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- categories:
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  missing_old: 5
  name: zfin_orthology_edges
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  - HGNC
  - MGI
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  node_types:
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    name: alliance_gene_nodes
    namespaces:
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    - ZFIN
    taxon:
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    - NCBITaxon:7955
    total_number: 5
  - categories:
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    name: hgnc_gene_nodes
    namespaces:
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    taxon:
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    total_number: 1
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    - MGI
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    missing_subject_namespaces:
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    total_number: 12
    uri: biolink:orthologous_to
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duplicate_edges:
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  missing: 1636
  missing_old: 1636
  name: bgee_gene_to_expression_edges
  namespaces:
  - CL
  - HGNC
  - NCBIGene
  - UBERON
  node_types:
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    name: hgnc_gene_nodes
    namespaces:
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    taxon:
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    total_number: 2
  - categories:
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    missing: 48
    name: ncbi_gene_9823_nodes
    namespaces:
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    taxon:
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    total_number: 48
  - categories:
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    name: ncbi_gene_9913_nodes
    namespaces:
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    taxon:
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    total_number: 929
  - categories:
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    - biolink:Cell
    missing: 149
    name: phenio_nodes
    namespaces:
    - CL
    - UBERON
    taxon:
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    total_number: 149
  predicates:
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    missing_objects: 0
    missing_subject_namespaces:
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    missing_subjects: 1636
    total_number: 22455
    uri: biolink:expressed_in
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- categories:
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  missing: 0
  missing_old: 0
  name: biogrid_gene_to_gene_edges
  namespaces:
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  node_types:
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    name: alliance_gene_nodes
    namespaces:
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    taxon:
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    total_number: 11
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    missing_objects: 0
    missing_subject_namespaces: []
    missing_subjects: 0
    total_number: 14
    uri: biolink:interacts_with
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- categories:
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  missing: 14
  missing_old: 14
  name: ctd_chemical_to_disease_edges
  namespaces:
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  - MESH
  - MONDO
  node_types:
  - categories:
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    - biolink:Disease
    missing: 50
    name: phenio_nodes
    namespaces:
    - CHEBI
    - MONDO
    taxon:
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    total_number: 50
  predicates:
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    missing_subject_namespaces: []
    missing_subjects: 0
    total_number: 94
    uri: biolink:treats_or_applied_or_studied_to_treat
  total_number: 94
- categories:
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  - biolink:MacromolecularMachineToCellularComponentAssociation
  - biolink:MacromolecularMachineToMolecularActivityAssociation
  missing: 0
  missing_old: 0
  name: go_annotation_edges
  namespaces:
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  - HGNC
  - NCBIGene
  - RGD
  node_types:
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    missing: 12
    name: alliance_gene_nodes
    namespaces:
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    taxon:
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    total_number: 12
  - categories:
    - biolink:Gene
    missing: 180
    name: hgnc_gene_nodes
    namespaces:
    - HGNC
    taxon:
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    total_number: 180
  - categories:
    - biolink:Gene
    missing: 43
    name: ncbi_gene_9031_nodes
    namespaces:
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    taxon:
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    total_number: 43
  - categories:
    - biolink:Gene
    missing: 46
    name: ncbi_gene_9615_nodes
    namespaces:
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    taxon:
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    total_number: 46
  - categories:
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    missing: 41
    name: ncbi_gene_9823_nodes
    namespaces:
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    taxon:
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    total_number: 41
  - categories:
    - biolink:Gene
    missing: 75
    name: ncbi_gene_9913_nodes
    namespaces:
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    taxon:
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    total_number: 75
  - categories:
    - biolink:BiologicalProcess
    - biolink:CellularComponent
    - biolink:MolecularActivity
    missing: 455
    name: phenio_nodes
    namespaces:
    - GO
    taxon:
    - missing taxon
    total_number: 455
  predicates:
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    missing_objects: 0
    missing_subject_namespaces: []
    missing_subjects: 0
    total_number: 1272
    uri: biolink:actively_involved_in
  - missing_object_namespaces: []
    missing_objects: 0
    missing_subject_namespaces: []
    missing_subjects: 0
    total_number: 4
    uri: biolink:acts_upstream_of_or_within
  - missing_object_namespaces: []
    missing_objects: 0
    missing_subject_namespaces: []
    missing_subjects: 0
    total_number: 10
    uri: biolink:acts_upstream_of_positive_effect
  - missing_object_namespaces: []
    missing_objects: 0
    missing_subject_namespaces: []
    missing_subjects: 0
    total_number: 2
    uri: biolink:colocalizes_with
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    missing_objects: 0
    missing_subject_namespaces: []
    missing_subjects: 0
    total_number: 16
    uri: biolink:contributes_to
  - missing_object_namespaces: []
    missing_objects: 0
    missing_subject_namespaces: []
    missing_subjects: 0
    total_number: 5110
    uri: biolink:enables
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    missing_objects: 0
    missing_subject_namespaces: []
    missing_subjects: 0
    total_number: 135
    uri: biolink:is_active_in
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    missing_objects: 0
    missing_subject_namespaces: []
    missing_subjects: 0
    total_number: 3946
    uri: biolink:located_in
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    missing_objects: 0
    missing_subject_namespaces: []
    missing_subjects: 0
    total_number: 541
    uri: biolink:part_of
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- categories:
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  missing: 0
  missing_old: 0
  name: hpoa_disease_mode_of_inheritance_edges
  namespaces:
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  node_types:
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    name: hgnc_gene_nodes
    namespaces:
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    taxon:
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    total_number: 1
  - categories:
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    - biolink:PhenotypicFeature
    missing: 2
    name: phenio_nodes
    namespaces:
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    - MONDO
    taxon:
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    total_number: 2
  predicates:
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    missing_objects: 0
    missing_subject_namespaces: []
    missing_subjects: 0
    total_number: 2
    uri: biolink:has_mode_of_inheritance
  total_number: 2
- categories:
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  missing_old: 0
  name: hpoa_disease_to_phenotype_edges
  namespaces:
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  node_types:
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    name: hgnc_gene_nodes
    namespaces:
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    taxon:
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    total_number: 1
  - categories:
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    name: phenio_nodes
    namespaces:
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    - MONDO
    taxon:
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    total_number: 2
  predicates:
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    missing_objects: 0
    missing_subject_namespaces: []
    missing_subjects: 0
    total_number: 2
    uri: biolink:has_phenotype
  total_number: 2
- categories:
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  missing: 4182
  missing_old: 4182
  name: panther_genome_orthologs_edges
  namespaces:
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  - FB
  - HGNC
  - MGI
  - NCBIGene
  - PomBase
  - RGD
  - SGD
  - WB
  - Xenbase
  - ZFIN
  - dictyBase
  node_types:
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    missing: 6474
    name: alliance_gene_nodes
    namespaces:
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    - MGI
    - RGD
    - SGD
    - WB
    - Xenbase
    - ZFIN
    taxon:
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    - NCBITaxon:559292
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    - NCBITaxon:7227
    - NCBITaxon:7955
    - NCBITaxon:8364
    total_number: 6806
  - categories:
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    missing: 566
    name: dictybase_gene_nodes
    namespaces:
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    taxon:
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    total_number: 566
  - categories:
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    missing: 1309
    name: hgnc_gene_nodes
    namespaces:
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    taxon:
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    total_number: 1309
  - categories:
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    missing: 718
    name: ncbi_gene_9615_nodes
    namespaces:
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    taxon:
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    total_number: 1175
  - categories:
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    missing: 1052
    name: ncbi_gene_9823_nodes
    namespaces:
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    taxon:
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    total_number: 1135
  - categories:
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    name: ncbi_gene_9913_nodes
    namespaces:
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    taxon:
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    total_number: 1126
  - categories:
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    missing: 302
    name: pombase_gene_nodes
    namespaces:
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    taxon:
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    total_number: 302
  predicates:
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    - Xenbase
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    missing_subject_namespaces:
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    - HGNC
    - MGI
    - NCBIGene
    - RGD
    missing_subjects: 1817
    total_number: 51283
    uri: biolink:orthologous_to
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- categories:
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  missing_old: 0
  name: reactome_gene_to_pathway_edges
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  - Reactome
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  node_types:
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    name: alliance_gene_nodes
    namespaces:
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    taxon:
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    total_number: 10
  - categories:
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    name: reactome_pathway_nodes
    namespaces:
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    taxon:
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    - NCBITaxon:7955
    total_number: 11
  predicates:
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    missing_subject_namespaces: []
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    total_number: 22
    uri: biolink:participates_in
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- categories:
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  name: string_protein_links_edges
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  node_types:
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    missing: 61
    name: alliance_gene_nodes
    namespaces:
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    taxon:
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    total_number: 103
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    missing_subject_namespaces: []
    missing_subjects: 0
    total_number: 252
    uri: biolink:interacts_with
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duplicate_nodes:
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- categories:
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  name: clinvar_variant_nodes
  namespaces:
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edges:
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  name: alliance_disease_edges
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    name: alliance_genotype_nodes
    namespaces:
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    taxon:
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    total_number: 8507
  - categories:
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    name: phenio_nodes
    namespaces:
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    taxon:
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    total_number: 2070
  predicates:
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    total_number: 10024
    uri: biolink:model_of
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  name: alliance_gene_to_expression_edges
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  node_types:
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    name: alliance_gene_nodes
    namespaces:
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    - WB
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    taxon:
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    total_number: 54414
  - categories:
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    name: phenio_nodes
    namespaces:
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    - FBbt
    - GO
    - WBbt
    - ZFA
    taxon:
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    total_number: 13701
  predicates:
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    missing_subject_namespaces: []
    missing_subjects: 0
    total_number: 1912819
    uri: biolink:expressed_in
  total_number: 1912819
- categories:
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  missing_old: 0
  name: alliance_phenotype_edges
  namespaces:
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  node_types:
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    missing: 20787
    name: alliance_gene_nodes
    namespaces:
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    - WB
    taxon:
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    total_number: 20787
  - categories:
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    missing: 75361
    name: alliance_genotype_nodes
    namespaces:
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    taxon:
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    total_number: 75361
  - categories:
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    name: phenio_nodes
    namespaces:
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    taxon:
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    total_number: 13060
  predicates:
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    missing_subject_namespaces: []
    missing_subjects: 0
    total_number: 709434
    uri: biolink:has_phenotype
  total_number: 709434
- categories:
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  missing_old: 0
  name: bgee_gene_to_expression_edges
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  node_types:
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    name: hgnc_gene_nodes
    namespaces:
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    taxon:
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    total_number: 31943
  - categories:
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    name: ncbi_gene_9823_nodes
    namespaces:
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    taxon:
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    total_number: 14151
  - categories:
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    name: ncbi_gene_9913_nodes
    namespaces:
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    taxon:
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    total_number: 13998
  - categories:
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    name: phenio_nodes
    namespaces:
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    taxon:
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    total_number: 376
  predicates:
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    total_number: 429629
    uri: biolink:expressed_in
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- categories:
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  name: biogrid_gene_to_gene_edges
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  - WB
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  node_types:
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    name: alliance_gene_nodes
    namespaces:
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    - WB
    - Xenbase
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    taxon:
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    total_number: 34829
  - categories:
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    name: hgnc_gene_nodes
    namespaces:
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    taxon:
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    total_number: 19804
  - categories:
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    name: ncbi_gene_227321_nodes
    namespaces:
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    taxon:
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    total_number: 64
  - categories:
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    name: ncbi_gene_9031_nodes
    namespaces:
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    taxon:
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    total_number: 356
  - categories:
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    name: ncbi_gene_9615_nodes
    namespaces:
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    uri: biolink:actively_involved_in
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    uri: biolink:acts_upstream_of
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    uri: biolink:acts_upstream_of_or_within_negative_effect
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    total_number: 590
    uri: biolink:acts_upstream_of_positive_effect
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    uri: biolink:enables
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    uri: biolink:has_mode_of_inheritance
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  - categories:
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    name: phenio_nodes
    namespaces:
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    taxon:
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    total_number: 8180
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    total_number: 6674
    uri: biolink:causes
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    total_number: 8059
    uri: biolink:gene_associated_with_condition
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    total_number: 312523
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    name: phenio_nodes
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    taxon:
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    uri: biolink:ameliorates_condition
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    total_number: 3
    uri: biolink:contraindicated_in
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    total_number: 145
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    total_number: 17
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  name: panther_genome_orthologs_edges
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    name: alliance_gene_nodes
    namespaces:
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    taxon:
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    total_number: 84651
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    name: dictybase_gene_nodes
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    total_number: 5793
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    name: hgnc_gene_nodes
    namespaces:
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    taxon:
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  - categories:
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    total_number: 15727
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    taxon:
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  - categories:
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    name: ncbi_gene_9913_nodes
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    taxon:
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    total_number: 12903
  - categories:
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    name: pombase_gene_nodes
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    uri: biolink:disease_has_location
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    uri: biolink:has_phenotype
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    taxon:
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    total_number: 13896
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    name: alliance_gene_nodes
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    total_number: 30540
  - categories:
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    name: alliance_gene_nodes
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  - categories:
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