metadata: operation: join generated_at: '2026-11-04 23:40:00' report_version: '1.0' schema_analysis: summary: nodes: file_count: 21 unique_columns: 34 all_columns: - available_from - broad_synonym - category - deprecated - description - exact_synonym - full_name - has_attribute - has_biological_sex - has_gene - id - in_taxon - in_taxon_label - iri - medic_application_numbers - medic_approved_authorities - medic_approved_jurisdictions - medic_earliest_approval_date - medic_marketing_status_usa - medic_mention_id - medic_registration_numbers - medic_reliability - medic_stub - name - narrow_synonym - provided_by - related_synonym - same_as - subsets - symbol - synonym - synonyms - type - xref edges: file_count: 39 unique_columns: 60 all_columns: - FDA_adverse_event_level - agent_type - aggregator_knowledge_source - category - clinical_approval_status - disease_context_qualifier - frequency_qualifier - has_attribute - has_confidence_score - has_count - has_evidence - has_percentage - has_quotient - has_total - id - knowledge_level - medic_approval_date - medic_approval_status_raw - medic_assertion_flags - medic_claim_relation - medic_co_administered_with - medic_disease_context - medic_disease_context_ids - medic_is_allergen - medic_is_diagnostic_agent - medic_jurisdiction - medic_object_mention_id - medic_pair_confidence - medic_pair_n_assertions - medic_pair_reliability - medic_reliability - medic_source - medic_subject_mention_id - medic_supporting_text_truncated - negated - object - object_aspect_qualifier - object_category - object_location_in_text - object_specialization_qualifier - onset_qualifier - original_object - original_predicate - original_subject - population_context_qualifier - predicate - primary_knowledge_source - provided_by - publications - qualifier - qualifiers - sex_qualifier - sources - species_context_qualifier - stage_qualifier - subject - subject_category - subject_form_or_variant_qualifier - supporting_text - temporal_context_qualifier files: - filename: output/transform_output/alliance_allele_edges.tsv table_type: edges column_count: 11 columns: - agent_type - aggregator_knowledge_source - category - id - knowledge_level - object - original_predicate - predicate - primary_knowledge_source - provided_by - subject - filename: output/transform_output/alliance_allele_nodes.tsv table_type: nodes column_count: 9 columns: - category - description - id - in_taxon - in_taxon_label - name - provided_by - symbol - synonyms - filename: output/transform_output/alliance_disease_edges.tsv table_type: edges column_count: 12 columns: - agent_type - aggregator_knowledge_source - category - has_evidence - id - knowledge_level - object - predicate - primary_knowledge_source - provided_by - publications - subject - filename: output/transform_output/alliance_gene_nodes.tsv table_type: nodes column_count: 12 columns: - category - description - full_name - id - in_taxon - in_taxon_label - name - provided_by - symbol - synonym - type - xref - filename: output/transform_output/alliance_gene_to_expression_edges.tsv table_type: edges column_count: 13 columns: - agent_type - aggregator_knowledge_source - category - id - knowledge_level - object - predicate - primary_knowledge_source - provided_by - publications - qualifiers - stage_qualifier - subject - filename: output/transform_output/alliance_genotype_edges.tsv table_type: edges column_count: 11 columns: - agent_type - aggregator_knowledge_source - category - id - knowledge_level - object - predicate - primary_knowledge_source - provided_by - qualifier - subject - filename: output/transform_output/alliance_genotype_nodes.tsv table_type: nodes column_count: 7 columns: - category - id - in_taxon - in_taxon_label - name - provided_by - type - filename: output/transform_output/alliance_phenotype_edges.tsv table_type: edges column_count: 12 columns: - agent_type - aggregator_knowledge_source - category - id - knowledge_level - object - predicate - primary_knowledge_source - provided_by - publications - qualifiers - subject - filename: output/transform_output/bgee_gene_to_expression_edges.tsv table_type: edges column_count: 11 columns: - agent_type - aggregator_knowledge_source - category - id - knowledge_level - object - object_specialization_qualifier - predicate - primary_knowledge_source - provided_by - subject - filename: output/transform_output/biogrid_gene_to_gene_edges.tsv table_type: edges column_count: 12 columns: - agent_type - aggregator_knowledge_source - category - has_evidence - id - knowledge_level - object - predicate - primary_knowledge_source - provided_by - publications - subject - filename: output/transform_output/clingen_gene_disease_edges.tsv table_type: edges column_count: 11 columns: - agent_type - aggregator_knowledge_source - category - id - knowledge_level - object - original_predicate - predicate - primary_knowledge_source - provided_by - subject - filename: output/transform_output/clingen_variant_edges.tsv table_type: edges column_count: 12 columns: - agent_type - aggregator_knowledge_source - category - id - knowledge_level - negated - object - original_predicate - predicate - primary_knowledge_source - provided_by - subject - filename: output/transform_output/clingen_variant_nodes.tsv table_type: nodes column_count: 8 columns: - category - has_gene - id - in_taxon - in_taxon_label - name - provided_by - xref - filename: output/transform_output/clinvar_variant_edges.tsv table_type: edges column_count: 13 columns: - agent_type - aggregator_knowledge_source - category - id - knowledge_level - negated - object - original_predicate - predicate - primary_knowledge_source - provided_by - qualifiers - subject - filename: output/transform_output/clinvar_variant_nodes.tsv table_type: nodes column_count: 9 columns: - category - has_gene - id - in_taxon - in_taxon_label - name - provided_by - type - xref - filename: output/transform_output/cureid_edges.tsv table_type: edges column_count: 13 columns: - FDA_adverse_event_level - agent_type - aggregator_knowledge_source - category - disease_context_qualifier - id - knowledge_level - object - predicate - primary_knowledge_source - provided_by - publications - subject - filename: output/transform_output/cureid_nodes.tsv table_type: nodes column_count: 5 columns: - category - id - in_taxon - iri - provided_by - filename: output/transform_output/dictybase_gene_nodes.tsv table_type: nodes column_count: 9 columns: - category - full_name - id - in_taxon - in_taxon_label - name - provided_by - symbol - synonym - filename: output/transform_output/dictybase_gene_to_phenotype_edges.tsv table_type: edges column_count: 10 columns: - agent_type - aggregator_knowledge_source - category - id - knowledge_level - object - predicate - primary_knowledge_source - provided_by - subject - filename: output/transform_output/go_annotation_edges.tsv table_type: edges column_count: 14 columns: - agent_type - aggregator_knowledge_source - category - has_evidence - id - knowledge_level - negated - object - predicate - primary_knowledge_source - provided_by - publications - species_context_qualifier - subject - filename: output/transform_output/hgnc_gene_nodes.tsv table_type: nodes column_count: 11 columns: - category - full_name - id - in_taxon - in_taxon_label - name - provided_by - symbol - synonym - type - xref - filename: output/transform_output/hpoa_disease_mode_of_inheritance_edges.tsv table_type: edges column_count: 12 columns: - agent_type - aggregator_knowledge_source - category - has_evidence - id - knowledge_level - object - predicate - primary_knowledge_source - provided_by - publications - subject - filename: output/transform_output/hpoa_disease_to_phenotype_edges.tsv table_type: edges column_count: 20 columns: - agent_type - aggregator_knowledge_source - category - frequency_qualifier - has_count - has_evidence - has_percentage - has_quotient - has_total - id - knowledge_level - negated - object - onset_qualifier - predicate - primary_knowledge_source - provided_by - publications - sex_qualifier - subject - filename: output/transform_output/hpoa_gene_to_phenotype_edges.tsv table_type: edges column_count: 17 columns: - agent_type - aggregator_knowledge_source - category - disease_context_qualifier - frequency_qualifier - has_count - has_percentage - has_quotient - has_total - id - knowledge_level - object - predicate - primary_knowledge_source - provided_by - publications - subject - filename: output/transform_output/loinc_composition_edges.tsv table_type: edges column_count: 10 columns: - agent_type - aggregator_knowledge_source - category - id - knowledge_level - object - predicate - primary_knowledge_source - provided_by - subject - filename: output/transform_output/loinc_hierarchy_edges.tsv table_type: edges column_count: 10 columns: - agent_type - aggregator_knowledge_source - category - id - knowledge_level - object - predicate - primary_knowledge_source - provided_by - subject - filename: output/transform_output/loinc_nodes_nodes.tsv table_type: nodes column_count: 5 columns: - category - deprecated - id - name - provided_by - filename: output/transform_output/loinc_parts_nodes.tsv table_type: nodes column_count: 4 columns: - category - id - name - provided_by - filename: output/transform_output/loinc_phenotype_edges.tsv table_type: edges column_count: 10 columns: - agent_type - aggregator_knowledge_source - category - id - knowledge_level - object - predicate - primary_knowledge_source - provided_by - subject - filename: output/transform_output/medic_edges.jsonl table_type: edges column_count: 40 columns: - agent_type - aggregator_knowledge_source - category - clinical_approval_status - disease_context_qualifier - has_confidence_score - has_evidence - id - knowledge_level - medic_approval_date - medic_approval_status_raw - medic_assertion_flags - medic_claim_relation - medic_co_administered_with - medic_disease_context - medic_disease_context_ids - medic_is_allergen - medic_is_diagnostic_agent - medic_jurisdiction - medic_object_mention_id - medic_pair_confidence - medic_pair_n_assertions - medic_pair_reliability - medic_reliability - medic_source - medic_subject_mention_id - medic_supporting_text_truncated - object - object_location_in_text - original_object - original_subject - population_context_qualifier - predicate - primary_knowledge_source - provided_by - sex_qualifier - sources - subject - supporting_text - temporal_context_qualifier - filename: output/transform_output/medic_nodes.jsonl table_type: nodes column_count: 16 columns: - available_from - category - id - medic_application_numbers - medic_approved_authorities - medic_approved_jurisdictions - medic_earliest_approval_date - medic_marketing_status_usa - medic_mention_id - medic_registration_numbers - medic_reliability - medic_stub - name - provided_by - synonym - xref - filename: output/transform_output/mmrrc_allele_to_genotype_edges.tsv table_type: edges column_count: 10 columns: - agent_type - aggregator_knowledge_source - category - id - knowledge_level - object - predicate - primary_knowledge_source - provided_by - subject - filename: output/transform_output/mmrrc_genotype_nodes.tsv table_type: nodes column_count: 7 columns: - category - id - in_taxon - in_taxon_label - name - provided_by - xref - filename: output/transform_output/mmrrc_genotype_to_gene_edges.tsv table_type: edges column_count: 11 columns: - agent_type - aggregator_knowledge_source - category - id - knowledge_level - object - predicate - primary_knowledge_source - provided_by - publications - subject - filename: output/transform_output/mmrrc_genotype_to_phenotype_edges.tsv table_type: edges column_count: 10 columns: - agent_type - aggregator_knowledge_source - category - id - knowledge_level - object - predicate - primary_knowledge_source - provided_by - subject - filename: output/transform_output/ncbi_gene_227321_nodes.tsv table_type: nodes column_count: 9 columns: - category - description - full_name - id - in_taxon - in_taxon_label - name - provided_by - symbol - filename: output/transform_output/ncbi_gene_9031_nodes.tsv table_type: nodes column_count: 9 columns: - category - description - full_name - id - in_taxon - in_taxon_label - name - provided_by - symbol - filename: output/transform_output/ncbi_gene_9615_nodes.tsv table_type: nodes column_count: 9 columns: - category - description - full_name - id - in_taxon - in_taxon_label - name - provided_by - symbol - filename: output/transform_output/ncbi_gene_9823_nodes.tsv table_type: nodes column_count: 9 columns: - category - description - full_name - id - in_taxon - in_taxon_label - name - provided_by - symbol - filename: output/transform_output/ncbi_gene_9913_nodes.tsv table_type: nodes column_count: 9 columns: - category - description - full_name - id - in_taxon - in_taxon_label - name - provided_by - symbol - filename: output/transform_output/omim_gene_to_disease_edges.tsv table_type: edges column_count: 12 columns: - agent_type - aggregator_knowledge_source - category - id - knowledge_level - object - object_category - predicate - primary_knowledge_source - provided_by - subject - subject_category - filename: output/transform_output/orphanet_gene_to_disease_edges.tsv table_type: edges column_count: 15 columns: - agent_type - aggregator_knowledge_source - category - id - knowledge_level - object - original_predicate - original_subject - predicate - primary_knowledge_source - provided_by - publications - qualifiers - subject - subject_form_or_variant_qualifier - filename: output/transform_output/panther_genome_orthologs_edges.tsv table_type: edges column_count: 11 columns: - agent_type - aggregator_knowledge_source - category - has_evidence - id - knowledge_level - object - predicate - primary_knowledge_source - provided_by - subject - filename: output/transform_output/phenio_edges.tsv table_type: edges column_count: 11 columns: - agent_type - aggregator_knowledge_source - category - id - knowledge_level - object - original_predicate - predicate - primary_knowledge_source - provided_by - subject - filename: output/transform_output/phenio_nodes.tsv table_type: nodes column_count: 17 columns: - broad_synonym - category - deprecated - description - exact_synonym - id - in_taxon - in_taxon_label - iri - name - narrow_synonym - provided_by - related_synonym - same_as - subsets - synonym - xref - filename: output/transform_output/phenopacket_ingest_edges.tsv table_type: edges column_count: 14 columns: - agent_type - category - has_attribute - id - knowledge_level - negated - object - object_aspect_qualifier - onset_qualifier - predicate - primary_knowledge_source - provided_by - publications - subject - filename: output/transform_output/phenopacket_ingest_nodes.tsv table_type: nodes column_count: 6 columns: - category - has_attribute - has_biological_sex - id - name - provided_by - filename: output/transform_output/pombase_gene_nodes.tsv table_type: nodes column_count: 10 columns: - category - full_name - id - in_taxon - in_taxon_label - name - provided_by - symbol - synonym - xref - filename: output/transform_output/pombase_gene_to_phenotype_edges.tsv table_type: edges column_count: 12 columns: - agent_type - aggregator_knowledge_source - category - id - knowledge_level - object - predicate - primary_knowledge_source - provided_by - publications - qualifiers - subject - filename: output/transform_output/reactome_chemical_to_pathway_edges.tsv table_type: edges column_count: 11 columns: - agent_type - aggregator_knowledge_source - category - has_evidence - id - knowledge_level - object - predicate - primary_knowledge_source - provided_by - subject - filename: output/transform_output/reactome_gene_to_pathway_edges.tsv table_type: edges column_count: 11 columns: - agent_type - aggregator_knowledge_source - category - has_evidence - id - knowledge_level - object - predicate - primary_knowledge_source - provided_by - subject - filename: output/transform_output/reactome_pathway_nodes.tsv table_type: nodes column_count: 6 columns: - category - id - in_taxon - name - provided_by - xref - filename: output/transform_output/string_protein_links_edges.tsv table_type: edges column_count: 11 columns: - agent_type - aggregator_knowledge_source - category - has_evidence - id - knowledge_level - object - predicate - primary_knowledge_source - provided_by - subject - filename: output/transform_output/upheno_phenotype_to_phenotype_edges.tsv table_type: edges column_count: 13 columns: - agent_type - aggregator_knowledge_source - category - id - knowledge_level - object - object_category - original_predicate - predicate - primary_knowledge_source - provided_by - subject - subject_category - filename: output/transform_output/xenbase_gene_to_phenotype_edges.tsv table_type: edges column_count: 11 columns: - agent_type - aggregator_knowledge_source - category - id - knowledge_level - object - predicate - primary_knowledge_source - provided_by - publications - subject - filename: output/transform_output/xenbase_non_entrez_orthologs_edges.tsv table_type: edges column_count: 10 columns: - agent_type - aggregator_knowledge_source - category - id - knowledge_level - object - predicate - primary_knowledge_source - provided_by - subject - filename: output/transform_output/xenbase_orthologs_edges.tsv table_type: edges column_count: 10 columns: - agent_type - aggregator_knowledge_source - category - id - knowledge_level - object - predicate - primary_knowledge_source - provided_by - subject - filename: output/transform_output/zfin_gene_to_phenotype_edges.tsv table_type: edges column_count: 11 columns: - agent_type - aggregator_knowledge_source - category - id - knowledge_level - object - predicate - primary_knowledge_source - provided_by - publications - subject - filename: output/transform_output/zfin_genotype_to_phenotype_edges.tsv table_type: edges column_count: 11 columns: - agent_type - aggregator_knowledge_source - category - id - knowledge_level - object - predicate - primary_knowledge_source - provided_by - publications - subject - filename: output/transform_output/zfin_orthology_edges.tsv table_type: edges column_count: 12 columns: - agent_type - aggregator_knowledge_source - category - has_evidence - id - knowledge_level - object - predicate - primary_knowledge_source - provided_by - publications - subject