summary: total_nodes: 1668236 total_edges: 16107480 dangling_edges: 3051025 duplicate_nodes: 12623 singleton_nodes: 0 nodes: - name: alliance_allele_nodes total_number: 204021 categories: - biolink:SequenceVariant namespaces: - MGI - RGD - ZFIN - name: alliance_gene_nodes total_number: 324705 categories: - biolink:Gene namespaces: - FB - MGI - RGD - SGD - WB - Xenbase - ZFIN - name: alliance_genotype_nodes total_number: 141327 categories: - biolink:Genotype namespaces: - MGI - RGD - ZFIN - name: clingen_variant_nodes total_number: 10267 categories: - biolink:SequenceVariant namespaces: - CAID - CLINVAR - name: clinvar_variant_nodes total_number: 93419 categories: - biolink:SequenceVariant namespaces: - CLINVAR - name: cureid_nodes total_number: 11 categories: - biolink:Case namespaces: - CUREID - name: dictybase_gene_nodes total_number: 14222 categories: - biolink:Gene namespaces: - dictyBase - name: hgnc_gene_nodes total_number: 45045 categories: - biolink:Gene namespaces: - HGNC - name: loinc_nodes_nodes total_number: 104672 categories: - biolink:ClinicalMeasurement namespaces: - LOINC - name: loinc_parts_nodes total_number: 3119 categories: - biolink:ClinicalMeasurement namespaces: - LOINC - name: mmrrc_genotype_nodes total_number: 69706 categories: - biolink:Genotype namespaces: - MMRRC - name: ncbi_gene_227321_nodes total_number: 10567 categories: - biolink:Gene namespaces: - NCBIGene - name: ncbi_gene_9031_nodes total_number: 32177 categories: - biolink:Gene namespaces: - NCBIGene - name: ncbi_gene_9615_nodes total_number: 50758 categories: - biolink:Gene namespaces: - NCBIGene - name: ncbi_gene_9823_nodes total_number: 54048 categories: - biolink:Gene namespaces: - NCBIGene - name: ncbi_gene_9913_nodes total_number: 57271 categories: - biolink:Gene namespaces: - NCBIGene - name: phenio_nodes total_number: 415255 categories: - biolink:AnatomicalEntity - biolink:BiologicalProcess - biolink:Cell - biolink:CellularComponent - biolink:ChemicalEntity - biolink:Disease - biolink:Gene - biolink:LifeStage - biolink:MolecularActivity - biolink:MolecularEntity - biolink:NamedThing - biolink:OrganismTaxon - biolink:PhenotypicFeature - biolink:Protein namespaces: - APO - BFO - BSPO - CHEBI - CHEBI/1 - CHEBI/2 - CHEBI/3 - CHEBI/BRAND - CHEBI/IUPAC - CHR - CL - CP - DDANAT - DDPHENO - EMAPA - FBDV - FBbt - FBcv - FOODON - FYPO - GO - GO/EXTENSIONS/RO - GOREL - HP - HsapDv - IAO - MAXO - MGPO - MONDO - MP - MPATH - NBO - NCBIGene - NCBITaxon - OBA - OBO - OMO - PATO - PHIPO - PLANP - PR - RO - SO - STATO - TERMS - UBERON - UBERON_CORE - UBPROP - UPHENO - WBLS - WBPhenotype - WBbt - XAO - XPO - ZFA - ZFS - ZP - dct - owl - pav - prov - skos - name: phenopacket_ingest_nodes total_number: 9588 categories: - biolink:Case namespaces: - phenopacket.store - name: pombase_gene_nodes total_number: 5126 categories: - biolink:Gene namespaces: - PomBase - name: reactome_pathway_nodes total_number: 22932 categories: - biolink:Pathway namespaces: - Reactome edges: - name: alliance_allele_edges total_number: 170639 predicates: - uri: biolink:is_sequence_variant_of count: 170639 namespaces: - MGI - RGD - ZFIN - name: alliance_disease_edges total_number: 10322 predicates: - uri: biolink:model_of count: 10322 namespaces: - MGI - MONDO - RGD - ZFIN - name: alliance_gene_to_expression_edges total_number: 1963462 predicates: - uri: biolink:expressed_in count: 1963462 namespaces: - EMAPA - FB - FBbt - GO - MGI - RGD - SGD - WB - WBbt - ZFA - ZFIN - name: alliance_genotype_edges total_number: 322228 predicates: - uri: biolink:has_sequence_variant count: 161114 - uri: biolink:related_to count: 161114 namespaces: - MGI - RGD - ZFIN - name: alliance_phenotype_edges total_number: 1053201 predicates: - uri: biolink:has_phenotype count: 1053201 namespaces: - MGI - MP - RGD - WB - WBPhenotype - name: bgee_gene_to_expression_edges total_number: 586853 predicates: - uri: biolink:expressed_in count: 586853 namespaces: - CL - HGNC - NCBIGene - UBERON - name: biogrid_gene_to_gene_edges total_number: 1355937 predicates: - uri: biolink:interacts_with count: 1355937 namespaces: - FB - HGNC - MGI - NCBIGene - PomBase - RGD - WB - Xenbase - ZFIN - name: clingen_gene_disease_edges total_number: 227 predicates: - uri: biolink:associated_with_increased_likelihood_of count: 35 - uri: biolink:causes count: 192 namespaces: - HGNC - MONDO - name: clingen_variant_edges total_number: 20540 predicates: - uri: biolink:associated_with_increased_likelihood_of count: 2781 - uri: biolink:causes count: 3503 - uri: biolink:genetically_associated_with count: 3990 - uri: biolink:is_sequence_variant_of count: 10266 namespaces: - CAID - CLINVAR - HGNC - MONDO - name: clinvar_variant_edges total_number: 285771 predicates: - uri: biolink:associated_with_increased_likelihood_of count: 5693 - uri: biolink:causes count: 180960 - uri: biolink:is_sequence_variant_of count: 99118 namespaces: - CLINVAR - HGNC - MONDO - name: cureid_edges total_number: 204 predicates: - uri: biolink:applied_to_treat count: 56 - uri: biolink:has_adverse_event count: 6 - uri: biolink:has_disease count: 10 - uri: biolink:has_gene count: 10 - uri: biolink:has_phenotype count: 122 namespaces: - CHEBI - CUREID - HGNC - HP - MONDO - NCBIGene - name: dictybase_gene_to_phenotype_edges total_number: 2716 predicates: - uri: biolink:has_phenotype count: 2716 namespaces: - DDPHENO - dictyBase - name: go_annotation_edges total_number: 3610112 predicates: - uri: biolink:active_in count: 206663 - uri: biolink:actively_involved_in count: 1072429 - uri: biolink:acts_upstream_of count: 2631 - uri: biolink:acts_upstream_of_negative_effect count: 171 - uri: biolink:acts_upstream_of_or_within count: 143246 - uri: biolink:acts_upstream_of_or_within_negative_effect count: 176 - uri: biolink:acts_upstream_of_or_within_positive_effect count: 535 - uri: biolink:acts_upstream_of_positive_effect count: 515 - uri: biolink:colocalizes_with count: 5883 - uri: biolink:contributes_to count: 11141 - uri: biolink:enables count: 1179939 - uri: biolink:located_in count: 841315 - uri: biolink:part_of count: 145468 namespaces: - FB - GO - HGNC - MGI - NCBIGene - PomBase - RGD - SGD - WB - ZFIN - dictyBase - name: hpoa_disease_mode_of_inheritance_edges total_number: 9026 predicates: - uri: biolink:has_mode_of_inheritance count: 9026 namespaces: - HGNC - HP - MONDO - name: hpoa_disease_to_phenotype_edges total_number: 266683 predicates: - uri: biolink:has_phenotype count: 266683 namespaces: - HGNC - HP - MONDO - name: hpoa_gene_to_disease_edges total_number: 8217 predicates: - uri: biolink:gene_associated_with_condition count: 8217 namespaces: - HGNC - MONDO - name: hpoa_gene_to_phenotype_edges total_number: 157943 predicates: - uri: biolink:has_phenotype count: 157943 namespaces: - HGNC - HP - name: loinc_composition_edges total_number: 13925 predicates: - uri: biolink:related_to count: 13925 namespaces: - CHEBI - CL - LOINC - NCBITaxon - PR - UBERON - name: loinc_hierarchy_edges total_number: 24310 predicates: - uri: biolink:subclass_of count: 24310 namespaces: - LOINC - name: loinc_phenotype_edges total_number: 7013 predicates: - uri: biolink:correlated_with count: 810 - uri: biolink:negatively_correlated_with count: 3101 - uri: biolink:positively_correlated_with count: 3102 namespaces: - HP - LOINC - name: mmrrc_allele_to_genotype_edges total_number: 30755 predicates: - uri: biolink:has_sequence_variant count: 30755 namespaces: - MGI - MMRRC - name: mmrrc_genotype_to_gene_edges total_number: 527283 predicates: - uri: biolink:related_to count: 527283 namespaces: - MGI - MMRRC - name: mmrrc_genotype_to_phenotype_edges total_number: 47250 predicates: - uri: biolink:has_phenotype count: 47250 namespaces: - MMRRC - MP - name: omim_gene_to_disease_edges total_number: 7587 predicates: - uri: biolink:causes count: 6956 - uri: biolink:contributes_to count: 631 namespaces: - HGNC - MONDO - name: panther_genome_orthologs_edges total_number: 1333225 predicates: - uri: biolink:orthologous_to count: 1333225 namespaces: - FB - HGNC - MGI - NCBIGene - PomBase - RGD - SGD - WB - Xenbase - ZFIN - dictyBase - name: phenio_edges total_number: 1630910 predicates: - uri: biolink:actively_involved_in count: 6 - uri: biolink:affects count: 86011 - uri: biolink:capable_of count: 1078 - uri: biolink:caused_by count: 113 - uri: biolink:causes count: 348 - uri: biolink:coexists_with count: 971 - uri: biolink:correlated_with count: 1 - uri: biolink:derives_from count: 218 - uri: biolink:develops_from count: 5706 - uri: biolink:directly_physically_interacts_with count: 49 - uri: biolink:disease_has_location count: 1017 - uri: biolink:disrupts count: 91 - uri: biolink:expresses count: 256 - uri: biolink:has_input count: 3470 - uri: biolink:has_output count: 2750 - uri: biolink:has_part count: 498993 - uri: biolink:has_participant count: 21539 - uri: biolink:has_phenotype count: 1207 - uri: biolink:homologous_to count: 12 - uri: biolink:in_taxon count: 24885 - uri: biolink:is_input_of count: 1 - uri: biolink:is_output_of count: 570 - uri: biolink:located_in count: 604 - uri: biolink:location_of count: 19 - uri: biolink:model_of count: 2 - uri: biolink:occurs_in count: 437 - uri: biolink:overlaps count: 13351 - uri: biolink:part_of count: 40632 - uri: biolink:participates_in count: 736 - uri: biolink:preceded_by count: 477 - uri: biolink:precedes count: 28 - uri: biolink:produced_by count: 65 - uri: biolink:produces count: 49 - uri: biolink:regulates count: 2 - uri: biolink:related_to count: 270623 - uri: biolink:same_as count: 4864 - uri: biolink:subclass_of count: 643353 - uri: biolink:temporally_related_to count: 6376 namespaces: - APO - BFO - BSPO - CHEBI - CHR - CL - DDANAT - DDPHENO - EMAPA - FBDV - FBbt - FBcv - FOODON - FYPO - GO - HGNC - HP - HsapDv - MAXO - MGPO - MONDO - MP - MPATH - NBO - NCBIGene - NCBITaxon - OBA - PATO - PHIPO - PLANP - PR - RO - SO - UBERON - UPHENO - WBLS - WBPhenotype - WBbt - XAO - XPO - ZFA - ZFS - ZP - name: phenopacket_ingest_edges total_number: 225117 predicates: - uri: biolink:has_disease count: 9587 - uri: biolink:has_gene count: 9519 - uri: biolink:has_phenotype count: 206011 namespaces: - HGNC - HP - MONDO - phenopacket.store - name: pombase_gene_to_phenotype_edges total_number: 180776 predicates: - uri: biolink:has_phenotype count: 180776 namespaces: - FYPO - PomBase - name: reactome_chemical_to_pathway_edges total_number: 109290 predicates: - uri: biolink:participates_in count: 109290 namespaces: - CHEBI - Reactome - name: reactome_gene_to_pathway_edges total_number: 245658 predicates: - uri: biolink:participates_in count: 245658 namespaces: - FB - HGNC - MGI - NCBIGene - PomBase - RGD - Reactome - WB - Xenbase - ZFIN - name: string_protein_links_edges total_number: 1402316 predicates: - uri: biolink:interacts_with count: 1402316 namespaces: - FB - HGNC - MGI - NCBIGene - PomBase - RGD - WB - Xenbase - ZFIN - name: upheno_phenotype_to_phenotype_edges total_number: 8858 predicates: - uri: biolink:homologous_to count: 8858 namespaces: - APO - DDPHENO - FBcv - FYPO - HP - MGPO - MP - PHIPO - PLANP - WBPhenotype - XPO - ZP - name: xenbase_gene_to_phenotype_edges total_number: 2436 predicates: - uri: biolink:has_phenotype count: 2436 namespaces: - XPO - Xenbase - name: xenbase_orthologs_edges total_number: 118039 predicates: - uri: biolink:orthologous_to count: 118039 namespaces: - HGNC - MGI - RGD - Xenbase - ZFIN - name: zfin_gene_to_phenotype_edges total_number: 165012 predicates: - uri: biolink:has_phenotype count: 165012 namespaces: - ZFIN - ZP - name: zfin_genotype_to_phenotype_edges total_number: 141025 predicates: - uri: biolink:has_phenotype count: 141025 namespaces: - ZFIN - ZP - name: zfin_orthology_edges total_number: 62614 predicates: - uri: biolink:orthologous_to count: 62614 namespaces: - FB - HGNC - MGI - ZFIN dangling_edges: - name: alliance_allele_edges total_number: 48 predicates: - uri: biolink:is_sequence_variant_of count: 48 namespaces: - ZFIN - name: alliance_disease_edges total_number: 576 predicates: - uri: biolink:model_of count: 576 namespaces: - DOID - MGI - MONDO - WB - name: alliance_gene_to_expression_edges total_number: 1634 predicates: - uri: biolink:expressed_in count: 1634 namespaces: - EMAPA - FB - GO - MGI - RGD - ZFA - ZFIN - name: alliance_genotype_edges total_number: 15192 predicates: - uri: biolink:has_sequence_variant count: 7596 - uri: biolink:related_to count: 7596 namespaces: - MGI - RGD - ZFIN - name: alliance_phenotype_edges total_number: 27703 predicates: - uri: biolink:has_phenotype count: 27703 namespaces: - WB - WBPhenotype - name: bgee_gene_to_expression_edges total_number: 146396 predicates: - uri: biolink:expressed_in count: 146396 namespaces: - CL - ENSEMBL - NCBIGene - UBERON - name: biogrid_gene_to_gene_edges total_number: 1207302 predicates: - uri: biolink:interacts_with count: 1207302 namespaces: - FB - HGNC - MGI - NCBIGene - PomBase - RGD - UniProtKB - WB - Xenbase - ZFIN - biogrid - name: cureid_edges total_number: 24 predicates: - uri: biolink:applied_to_treat count: 7 - uri: biolink:has_adverse_event count: 1 - uri: biolink:has_disease count: 1 - uri: biolink:has_phenotype count: 15 namespaces: - CHEBI - CUREID - HP - MONDO - NCIT - ORPHA - SNOMED - UMLS - UNII - name: go_annotation_edges total_number: 490236 predicates: - uri: biolink:active_in count: 28030 - uri: biolink:actively_involved_in count: 174641 - uri: biolink:acts_upstream_of count: 564 - uri: biolink:acts_upstream_of_negative_effect count: 7 - uri: biolink:acts_upstream_of_or_within count: 88 - uri: biolink:acts_upstream_of_or_within_negative_effect count: 1 - uri: biolink:acts_upstream_of_or_within_positive_effect count: 1 - uri: biolink:acts_upstream_of_positive_effect count: 11 - uri: biolink:colocalizes_with count: 1020 - uri: biolink:contributes_to count: 1290 - uri: biolink:enables count: 143405 - uri: biolink:located_in count: 114406 - uri: biolink:part_of count: 26772 namespaces: - ComplexPortal - FB - GO - MGI - NCBIGene - RGD - RNAcentral - SGD - UniProtKB - name: hpoa_disease_mode_of_inheritance_edges total_number: 40 predicates: - uri: biolink:has_mode_of_inheritance count: 40 namespaces: - DECIPHER - HP - OMIM - name: hpoa_disease_to_phenotype_edges total_number: 1099 predicates: - uri: biolink:has_phenotype count: 1099 namespaces: - DECIPHER - HP - OMIM - Orphanet - name: hpoa_gene_to_disease_edges total_number: 71 predicates: - uri: biolink:gene_associated_with_condition count: 71 namespaces: - HGNC - Orphanet - name: hpoa_gene_to_phenotype_edges total_number: 375 predicates: - uri: biolink:has_phenotype count: 375 namespaces: - HP - NCBIGene - name: loinc_composition_edges total_number: 1519 predicates: - uri: biolink:related_to count: 1519 namespaces: - CHEBI - LOINC - NCBITaxon - PR - name: mmrrc_allele_to_genotype_edges total_number: 13433 predicates: - uri: biolink:has_sequence_variant count: 13433 namespaces: - MGI - MMRRC - name: mmrrc_genotype_to_gene_edges total_number: 1430 predicates: - uri: biolink:related_to count: 1430 namespaces: - MGI - MMRRC - name: omim_gene_to_disease_edges total_number: 143 predicates: - uri: biolink:causes count: 120 - uri: biolink:contributes_to count: 23 namespaces: - HGNC - MONDO - OMIM - name: panther_genome_orthologs_edges total_number: 557133 predicates: - uri: biolink:orthologous_to count: 557133 namespaces: - ENSEMBL - FB - HGNC - MGI - NCBIGene - PomBase - RGD - SGD - UniProtKB - WB - Xenbase - ZFIN - dictyBase - name: phenio_edges total_number: 14 predicates: - uri: biolink:related_to count: 14 namespaces: - MONDO - NCBIGene - name: phenopacket_ingest_edges total_number: 1 predicates: - uri: biolink:has_disease count: 1 namespaces: - OMIM - phenopacket.store - name: pombase_gene_to_phenotype_edges total_number: 1813 predicates: - uri: biolink:has_phenotype count: 1813 namespaces: - FYPO - PomBase - name: reactome_chemical_to_pathway_edges total_number: 2285 predicates: - uri: biolink:participates_in count: 2285 namespaces: - CHEBI - Reactome - name: reactome_gene_to_pathway_edges total_number: 20136 predicates: - uri: biolink:participates_in count: 20136 namespaces: - NCBIGene - Reactome - name: string_protein_links_edges total_number: 485838 predicates: - uri: biolink:interacts_with count: 485838 namespaces: - FB - HGNC - MGI - NCBIGene - PomBase - RGD - WB - Xenbase - ZFIN - name: upheno_phenotype_to_phenotype_edges total_number: 16 predicates: - uri: biolink:homologous_to count: 16 namespaces: - APO - FYPO - PHIPO - PLANP - WBPhenotype - XPO - name: xenbase_gene_to_phenotype_edges total_number: 156 predicates: - uri: biolink:has_phenotype count: 156 namespaces: - XPO - Xenbase - name: xenbase_non_entrez_orthologs_edges total_number: 45322 predicates: - uri: biolink:orthologous_to count: 45322 namespaces: - HGNC - MGI - OMIM - Xenbase - ZFIN - name: xenbase_orthologs_edges total_number: 20528 predicates: - uri: biolink:orthologous_to count: 20528 namespaces: - HGNC - MGI - NCBIGene - RGD - Xenbase - ZFIN - name: zfin_gene_to_phenotype_edges total_number: 5216 predicates: - uri: biolink:has_phenotype count: 5216 namespaces: - 0-0-GO - 0-0-ZFA - BSPO - CHEBI - GO - MPATH - ZFA - ZFIN - name: zfin_genotype_to_phenotype_edges total_number: 5338 predicates: - uri: biolink:has_phenotype count: 5338 namespaces: - 0-0-GO - 0-0-ZFA - BSPO - CHEBI - GO - MPATH - ZFA - ZFIN - ZP - name: zfin_orthology_edges total_number: 8 predicates: - uri: biolink:orthologous_to count: 8 namespaces: - FB - HGNC - MGI - ZFIN duplicate_nodes: - name: alliance_allele_nodes total_number: 585 categories: - biolink:SequenceVariant namespaces: - MGI - name: clingen_variant_nodes total_number: 5944 categories: - biolink:SequenceVariant namespaces: - CLINVAR - name: clinvar_variant_nodes total_number: 5944 categories: - biolink:SequenceVariant namespaces: - CLINVAR - name: cureid_nodes total_number: 150 categories: - biolink:Case namespaces: - CUREID duplicate_edges: - name: cureid_edges total_number: 156 predicates: - uri: biolink:has_disease count: 150 - uri: biolink:has_phenotype count: 6 namespaces: - CUREID - HP - MONDO - ORPHA