summary: total_nodes: 1666878 total_edges: 16066449 dangling_edges: 2950904 duplicate_nodes: 12509 singleton_nodes: 0 nodes: - name: alliance_allele_nodes total_number: 204021 categories: - biolink:SequenceVariant namespaces: - MGI - RGD - ZFIN - name: alliance_gene_nodes total_number: 324701 categories: - biolink:Gene namespaces: - FB - MGI - RGD - SGD - WB - Xenbase - ZFIN - name: alliance_genotype_nodes total_number: 140488 categories: - biolink:Genotype namespaces: - MGI - RGD - ZFIN - name: clingen_variant_nodes total_number: 10183 categories: - biolink:SequenceVariant namespaces: - CAID - CLINVAR - name: clinvar_variant_nodes total_number: 93354 categories: - biolink:SequenceVariant namespaces: - CLINVAR - name: cureid_nodes total_number: 11 categories: - biolink:Case namespaces: - CUREID - name: dictybase_gene_nodes total_number: 14222 categories: - biolink:Gene namespaces: - dictyBase - name: hgnc_gene_nodes total_number: 45030 categories: - biolink:Gene namespaces: - HGNC - name: loinc_nodes_nodes total_number: 104672 categories: - biolink:ClinicalMeasurement namespaces: - LOINC - name: loinc_parts_nodes total_number: 3119 categories: - biolink:ClinicalMeasurement namespaces: - LOINC - name: mmrrc_genotype_nodes total_number: 69388 categories: - biolink:Genotype namespaces: - MMRRC - name: ncbi_gene_227321_nodes total_number: 10567 categories: - biolink:Gene namespaces: - NCBIGene - name: ncbi_gene_9031_nodes total_number: 32177 categories: - biolink:Gene namespaces: - NCBIGene - name: ncbi_gene_9615_nodes total_number: 50758 categories: - biolink:Gene namespaces: - NCBIGene - name: ncbi_gene_9823_nodes total_number: 54048 categories: - biolink:Gene namespaces: - NCBIGene - name: ncbi_gene_9913_nodes total_number: 57271 categories: - biolink:Gene namespaces: - NCBIGene - name: phenio_nodes total_number: 415222 categories: - biolink:AnatomicalEntity - biolink:BiologicalProcess - biolink:Cell - biolink:CellularComponent - biolink:ChemicalEntity - biolink:Disease - biolink:Gene - biolink:LifeStage - biolink:MolecularActivity - biolink:MolecularEntity - biolink:NamedThing - biolink:OrganismTaxon - biolink:PhenotypicFeature - biolink:Protein namespaces: - APO - BFO - BSPO - CHEBI - CHEBI/1 - CHEBI/2 - CHEBI/3 - CHEBI/BRAND - CHEBI/IUPAC - CHR - CL - CP - DDANAT - DDPHENO - EMAPA - FBDV - FBbt - FBcv - FOODON - FYPO - GO - GO/EXTENSIONS/RO - GOREL - HP - HsapDv - IAO - MAXO - MGPO - MONDO - MP - MPATH - NBO - NCBIGene - NCBITaxon - OBA - OBO - OMO - PATO - PHIPO - PLANP - PR - RO - SO - STATO - TERMS - UBERON - UBERON_CORE - UBPROP - UPHENO - WBLS - WBPhenotype - WBbt - XAO - XPO - ZFA - ZFS - ZP - dct - owl - pav - prov - skos - name: phenopacket_ingest_nodes total_number: 9588 categories: - biolink:Case namespaces: - phenopacket.store - name: pombase_gene_nodes total_number: 5126 categories: - biolink:Gene namespaces: - PomBase - name: reactome_pathway_nodes total_number: 22932 categories: - biolink:Pathway namespaces: - Reactome edges: - name: alliance_allele_edges total_number: 170687 predicates: - uri: biolink:is_sequence_variant_of count: 170687 namespaces: - MGI - RGD - ZFIN - name: alliance_disease_edges total_number: 10322 predicates: - uri: biolink:model_of count: 10322 namespaces: - MGI - MONDO - RGD - ZFIN - name: alliance_gene_to_expression_edges total_number: 1957041 predicates: - uri: biolink:expressed_in count: 1957041 namespaces: - EMAPA - FB - FBbt - GO - MGI - RGD - SGD - WB - WBbt - ZFA - ZFIN - name: alliance_genotype_edges total_number: 320460 predicates: - uri: biolink:has_sequence_variant count: 160230 - uri: biolink:related_to count: 160230 namespaces: - MGI - RGD - ZFIN - name: alliance_phenotype_edges total_number: 1052211 predicates: - uri: biolink:has_phenotype count: 1052211 namespaces: - MGI - MP - RGD - WB - WBPhenotype - name: bgee_gene_to_expression_edges total_number: 487935 predicates: - uri: biolink:expressed_in count: 487935 namespaces: - CL - HGNC - NCBIGene - UBERON - name: biogrid_gene_to_gene_edges total_number: 1355937 predicates: - uri: biolink:interacts_with count: 1355937 namespaces: - FB - HGNC - MGI - NCBIGene - PomBase - RGD - WB - Xenbase - ZFIN - name: clingen_gene_disease_edges total_number: 226 predicates: - uri: biolink:associated_with_increased_likelihood_of count: 36 - uri: biolink:causes count: 190 namespaces: - HGNC - MONDO - name: clingen_variant_edges total_number: 20372 predicates: - uri: biolink:associated_with_increased_likelihood_of count: 2764 - uri: biolink:causes count: 3461 - uri: biolink:genetically_associated_with count: 3965 - uri: biolink:is_sequence_variant_of count: 10182 namespaces: - CAID - CLINVAR - HGNC - MONDO - name: clinvar_variant_edges total_number: 285361 predicates: - uri: biolink:associated_with_increased_likelihood_of count: 5702 - uri: biolink:causes count: 180661 - uri: biolink:is_sequence_variant_of count: 98998 namespaces: - CLINVAR - HGNC - MONDO - name: cureid_edges total_number: 204 predicates: - uri: biolink:applied_to_treat count: 56 - uri: biolink:has_adverse_event count: 6 - uri: biolink:has_disease count: 10 - uri: biolink:has_gene count: 10 - uri: biolink:has_phenotype count: 122 namespaces: - CHEBI - CUREID - HGNC - HP - MONDO - NCBIGene - name: dictybase_gene_to_phenotype_edges total_number: 2716 predicates: - uri: biolink:has_phenotype count: 2716 namespaces: - DDPHENO - dictyBase - name: go_annotation_edges total_number: 3480008 predicates: - uri: biolink:active_in count: 196067 - uri: biolink:actively_involved_in count: 1039865 - uri: biolink:acts_upstream_of count: 2600 - uri: biolink:acts_upstream_of_negative_effect count: 170 - uri: biolink:acts_upstream_of_or_within count: 133070 - uri: biolink:acts_upstream_of_or_within_negative_effect count: 168 - uri: biolink:acts_upstream_of_or_within_positive_effect count: 494 - uri: biolink:acts_upstream_of_positive_effect count: 508 - uri: biolink:colocalizes_with count: 5830 - uri: biolink:contributes_to count: 10830 - uri: biolink:enables count: 1140036 - uri: biolink:located_in count: 810151 - uri: biolink:part_of count: 140219 namespaces: - FB - GO - HGNC - MGI - NCBIGene - PomBase - RGD - SGD - WB - ZFIN - dictyBase - name: hpoa_disease_mode_of_inheritance_edges total_number: 9026 predicates: - uri: biolink:has_mode_of_inheritance count: 9026 namespaces: - HGNC - HP - MONDO - name: hpoa_disease_to_phenotype_edges total_number: 266683 predicates: - uri: biolink:has_phenotype count: 266683 namespaces: - HGNC - HP - MONDO - name: hpoa_gene_to_disease_edges total_number: 8217 predicates: - uri: biolink:gene_associated_with_condition count: 8217 namespaces: - HGNC - MONDO - name: hpoa_gene_to_phenotype_edges total_number: 157943 predicates: - uri: biolink:has_phenotype count: 157943 namespaces: - HGNC - HP - name: loinc_composition_edges total_number: 13925 predicates: - uri: biolink:related_to count: 13925 namespaces: - CHEBI - CL - LOINC - NCBITaxon - PR - UBERON - name: loinc_hierarchy_edges total_number: 24310 predicates: - uri: biolink:subclass_of count: 24310 namespaces: - LOINC - name: loinc_phenotype_edges total_number: 7013 predicates: - uri: biolink:correlated_with count: 810 - uri: biolink:negatively_correlated_with count: 3101 - uri: biolink:positively_correlated_with count: 3102 namespaces: - HP - LOINC - name: mmrrc_allele_to_genotype_edges total_number: 30735 predicates: - uri: biolink:has_sequence_variant count: 30735 namespaces: - MGI - MMRRC - name: mmrrc_genotype_to_gene_edges total_number: 527268 predicates: - uri: biolink:related_to count: 527268 namespaces: - MGI - MMRRC - name: mmrrc_genotype_to_phenotype_edges total_number: 47223 predicates: - uri: biolink:has_phenotype count: 47223 namespaces: - MMRRC - MP - name: omim_gene_to_disease_edges total_number: 7588 predicates: - uri: biolink:causes count: 6956 - uri: biolink:contributes_to count: 632 namespaces: - HGNC - MONDO - name: panther_genome_orthologs_edges total_number: 1530006 predicates: - uri: biolink:orthologous_to count: 1530006 namespaces: - FB - HGNC - MGI - NCBIGene - PomBase - RGD - SGD - WB - Xenbase - ZFIN - dictyBase - name: phenio_edges total_number: 1634700 predicates: - uri: biolink:actively_involved_in count: 6 - uri: biolink:affects count: 86000 - uri: biolink:capable_of count: 1078 - uri: biolink:caused_by count: 113 - uri: biolink:causes count: 348 - uri: biolink:coexists_with count: 971 - uri: biolink:correlated_with count: 1 - uri: biolink:derives_from count: 218 - uri: biolink:develops_from count: 5706 - uri: biolink:directly_physically_interacts_with count: 49 - uri: biolink:disease_has_location count: 1017 - uri: biolink:disrupts count: 91 - uri: biolink:expresses count: 256 - uri: biolink:has_input count: 3470 - uri: biolink:has_output count: 2750 - uri: biolink:has_part count: 498994 - uri: biolink:has_participant count: 21539 - uri: biolink:has_phenotype count: 1207 - uri: biolink:homologous_to count: 12 - uri: biolink:in_taxon count: 24885 - uri: biolink:is_input_of count: 1 - uri: biolink:is_output_of count: 570 - uri: biolink:located_in count: 604 - uri: biolink:location_of count: 19 - uri: biolink:model_of count: 2 - uri: biolink:occurs_in count: 437 - uri: biolink:overlaps count: 13351 - uri: biolink:part_of count: 40633 - uri: biolink:participates_in count: 736 - uri: biolink:preceded_by count: 477 - uri: biolink:precedes count: 28 - uri: biolink:produced_by count: 65 - uri: biolink:produces count: 49 - uri: biolink:regulates count: 2 - uri: biolink:related_to count: 270653 - uri: biolink:same_as count: 4734 - uri: biolink:subclass_of count: 647252 - uri: biolink:temporally_related_to count: 6376 namespaces: - APO - BFO - BSPO - CHEBI - CHR - CL - DDANAT - DDPHENO - EMAPA - FBDV - FBbt - FBcv - FOODON - FYPO - GO - HGNC - HP - HsapDv - MAXO - MGPO - MONDO - MP - MPATH - NBO - NCBIGene - NCBITaxon - OBA - PATO - PHIPO - PLANP - PR - RO - SO - UBERON - UPHENO - WBLS - WBPhenotype - WBbt - XAO - XPO - ZFA - ZFS - ZP - name: phenopacket_ingest_edges total_number: 225117 predicates: - uri: biolink:has_disease count: 9587 - uri: biolink:has_gene count: 9519 - uri: biolink:has_phenotype count: 206011 namespaces: - HGNC - HP - MONDO - phenopacket.store - name: pombase_gene_to_phenotype_edges total_number: 180050 predicates: - uri: biolink:has_phenotype count: 180050 namespaces: - FYPO - PomBase - name: reactome_chemical_to_pathway_edges total_number: 109290 predicates: - uri: biolink:participates_in count: 109290 namespaces: - CHEBI - Reactome - name: reactome_gene_to_pathway_edges total_number: 245658 predicates: - uri: biolink:participates_in count: 245658 namespaces: - FB - HGNC - MGI - NCBIGene - PomBase - RGD - Reactome - WB - Xenbase - ZFIN - name: string_protein_links_edges total_number: 1402316 predicates: - uri: biolink:interacts_with count: 1402316 namespaces: - FB - HGNC - MGI - NCBIGene - PomBase - RGD - WB - Xenbase - ZFIN - name: upheno_phenotype_to_phenotype_edges total_number: 8858 predicates: - uri: biolink:homologous_to count: 8858 namespaces: - APO - DDPHENO - FBcv - FYPO - HP - MGPO - MP - PHIPO - PLANP - WBPhenotype - XPO - ZP - name: xenbase_gene_to_phenotype_edges total_number: 2436 predicates: - uri: biolink:has_phenotype count: 2436 namespaces: - XPO - Xenbase - name: xenbase_orthologs_edges total_number: 118032 predicates: - uri: biolink:orthologous_to count: 118032 namespaces: - HGNC - MGI - RGD - Xenbase - ZFIN - name: zfin_gene_to_phenotype_edges total_number: 164069 predicates: - uri: biolink:has_phenotype count: 164069 namespaces: - ZFIN - ZP - name: zfin_genotype_to_phenotype_edges total_number: 139928 predicates: - uri: biolink:has_phenotype count: 139928 namespaces: - ZFIN - ZP - name: zfin_orthology_edges total_number: 62578 predicates: - uri: biolink:orthologous_to count: 62578 namespaces: - FB - HGNC - MGI - ZFIN dangling_edges: - name: alliance_disease_edges total_number: 576 predicates: - uri: biolink:model_of count: 576 namespaces: - DOID - MGI - MONDO - WB - name: alliance_gene_to_expression_edges total_number: 1633 predicates: - uri: biolink:expressed_in count: 1633 namespaces: - EMAPA - FB - GO - MGI - RGD - ZFA - ZFIN - name: alliance_genotype_edges total_number: 14490 predicates: - uri: biolink:has_sequence_variant count: 7245 - uri: biolink:related_to count: 7245 namespaces: - MGI - RGD - ZFIN - name: alliance_phenotype_edges total_number: 27703 predicates: - uri: biolink:has_phenotype count: 27703 namespaces: - WB - WBPhenotype - name: bgee_gene_to_expression_edges total_number: 245314 predicates: - uri: biolink:expressed_in count: 245314 namespaces: - CL - ENSEMBL - NCBIGene - UBERON - name: biogrid_gene_to_gene_edges total_number: 1207302 predicates: - uri: biolink:interacts_with count: 1207302 namespaces: - FB - HGNC - MGI - NCBIGene - PomBase - RGD - UniProtKB - WB - Xenbase - ZFIN - biogrid - name: cureid_edges total_number: 24 predicates: - uri: biolink:applied_to_treat count: 7 - uri: biolink:has_adverse_event count: 1 - uri: biolink:has_disease count: 1 - uri: biolink:has_phenotype count: 15 namespaces: - CHEBI - CUREID - HP - MONDO - NCIT - ORPHA - SNOMED - UMLS - UNII - name: go_annotation_edges total_number: 488663 predicates: - uri: biolink:active_in count: 27999 - uri: biolink:actively_involved_in count: 174727 - uri: biolink:acts_upstream_of count: 564 - uri: biolink:acts_upstream_of_negative_effect count: 7 - uri: biolink:acts_upstream_of_or_within count: 89 - uri: biolink:acts_upstream_of_or_within_negative_effect count: 1 - uri: biolink:acts_upstream_of_or_within_positive_effect count: 1 - uri: biolink:acts_upstream_of_positive_effect count: 11 - uri: biolink:colocalizes_with count: 1020 - uri: biolink:contributes_to count: 1285 - uri: biolink:enables count: 143096 - uri: biolink:located_in count: 113112 - uri: biolink:part_of count: 26751 namespaces: - ComplexPortal - GO - MGI - NCBIGene - RNAcentral - SGD - UniProtKB - ZFIN - name: hpoa_disease_mode_of_inheritance_edges total_number: 40 predicates: - uri: biolink:has_mode_of_inheritance count: 40 namespaces: - DECIPHER - HP - OMIM - name: hpoa_disease_to_phenotype_edges total_number: 1099 predicates: - uri: biolink:has_phenotype count: 1099 namespaces: - DECIPHER - HP - OMIM - Orphanet - name: hpoa_gene_to_disease_edges total_number: 71 predicates: - uri: biolink:gene_associated_with_condition count: 71 namespaces: - HGNC - Orphanet - name: hpoa_gene_to_phenotype_edges total_number: 375 predicates: - uri: biolink:has_phenotype count: 375 namespaces: - HP - NCBIGene - name: loinc_composition_edges total_number: 1519 predicates: - uri: biolink:related_to count: 1519 namespaces: - CHEBI - LOINC - NCBITaxon - PR - name: mmrrc_allele_to_genotype_edges total_number: 13417 predicates: - uri: biolink:has_sequence_variant count: 13417 namespaces: - MGI - MMRRC - name: mmrrc_genotype_to_gene_edges total_number: 1430 predicates: - uri: biolink:related_to count: 1430 namespaces: - MGI - MMRRC - name: omim_gene_to_disease_edges total_number: 137 predicates: - uri: biolink:causes count: 114 - uri: biolink:contributes_to count: 23 namespaces: - HGNC - MONDO - OMIM - name: panther_genome_orthologs_edges total_number: 360352 predicates: - uri: biolink:orthologous_to count: 360352 namespaces: - ENSEMBL - FB - HGNC - MGI - NCBIGene - PomBase - RGD - SGD - UniProtKB - WB - Xenbase - ZFIN - dictyBase - name: phenio_edges total_number: 14 predicates: - uri: biolink:related_to count: 14 namespaces: - MONDO - NCBIGene - name: phenopacket_ingest_edges total_number: 1 predicates: - uri: biolink:has_disease count: 1 namespaces: - OMIM - phenopacket.store - name: pombase_gene_to_phenotype_edges total_number: 1813 predicates: - uri: biolink:has_phenotype count: 1813 namespaces: - FYPO - PomBase - name: reactome_chemical_to_pathway_edges total_number: 2285 predicates: - uri: biolink:participates_in count: 2285 namespaces: - CHEBI - Reactome - name: reactome_gene_to_pathway_edges total_number: 20136 predicates: - uri: biolink:participates_in count: 20136 namespaces: - NCBIGene - Reactome - name: string_protein_links_edges total_number: 485838 predicates: - uri: biolink:interacts_with count: 485838 namespaces: - FB - HGNC - MGI - NCBIGene - PomBase - RGD - WB - Xenbase - ZFIN - name: upheno_phenotype_to_phenotype_edges total_number: 16 predicates: - uri: biolink:homologous_to count: 16 namespaces: - APO - FYPO - PHIPO - PLANP - WBPhenotype - XPO - name: xenbase_gene_to_phenotype_edges total_number: 156 predicates: - uri: biolink:has_phenotype count: 156 namespaces: - XPO - Xenbase - name: xenbase_non_entrez_orthologs_edges total_number: 45318 predicates: - uri: biolink:orthologous_to count: 45318 namespaces: - HGNC - MGI - OMIM - Xenbase - ZFIN - name: xenbase_orthologs_edges total_number: 20523 predicates: - uri: biolink:orthologous_to count: 20523 namespaces: - HGNC - MGI - NCBIGene - RGD - Xenbase - ZFIN - name: zfin_gene_to_phenotype_edges total_number: 4938 predicates: - uri: biolink:has_phenotype count: 4938 namespaces: - 0-0-GO - 0-0-ZFA - BSPO - CHEBI - GO - MPATH - ZFA - ZFIN - ZP - name: zfin_genotype_to_phenotype_edges total_number: 5704 predicates: - uri: biolink:has_phenotype count: 5704 namespaces: - 0-0-GO - 0-0-ZFA - BSPO - CHEBI - GO - MPATH - ZFA - ZFIN - ZP - name: zfin_orthology_edges total_number: 17 predicates: - uri: biolink:orthologous_to count: 17 namespaces: - FB - HGNC - MGI - ZFIN duplicate_nodes: - name: alliance_allele_nodes total_number: 585 categories: - biolink:SequenceVariant namespaces: - MGI - name: clingen_variant_nodes total_number: 5887 categories: - biolink:SequenceVariant namespaces: - CLINVAR - name: clinvar_variant_nodes total_number: 5887 categories: - biolink:SequenceVariant namespaces: - CLINVAR - name: cureid_nodes total_number: 150 categories: - biolink:Case namespaces: - CUREID duplicate_edges: - name: cureid_edges total_number: 156 predicates: - uri: biolink:has_disease count: 150 - uri: biolink:has_phenotype count: 6 namespaces: - CUREID - HP - MONDO - ORPHA