id: kg-phenio
version: v2026-07-07
transform_version: 5603207a
biolink_version: 4.2.5
build_version: kg-phenio_v2026-07-07_5603207a_4.2.5
generated_at: '2026-07-08T09:30:11Z'
sources:
- id: phenio
  name: PHENIO
  urls:
  - https://github.com/monarch-initiative/phenio/releases/latest/download/phenio.json
  version: v2026-07-07
  version_method: github_release_api
  retrieved_at: '2026-07-08T09:30:10Z'
  sources:
  - id: infores:bfo
    name: BFO
    urls:
    - http://purl.obolibrary.org/obo/bfo/2019-08-26/bfo.owl
    version: '2019-08-26'
    version_method: owl_version_iri
  - id: infores:bspo
    name: BSPO
    urls:
    - http://purl.obolibrary.org/obo/bspo/releases/2023-05-27/bspo-base.owl
    version: '2023-05-27'
    version_method: owl_version_iri
  - id: infores:chebi
    name: CHEBI
    urls:
    - http://purl.obolibrary.org/obo/chebi/obophenotype/releases/2026-06-10/chebi_slim.owl
    version: '2026-06-10'
    version_method: owl_version_iri
  - id: infores:eco
    name: ECO
    urls:
    - http://purl.obolibrary.org/obo/eco/releases/2026-05-15/eco.owl
    version: '2026-05-15'
    version_method: owl_version_iri
  - id: infores:fbdv
    name: FBDV
    urls:
    - http://purl.obolibrary.org/obo/fbdv/releases/2026-04-02/fbdv-base.owl
    version: '2026-04-02'
    version_method: owl_version_iri
  - id: infores:foodon
    name: FOODON
    urls:
    - http://purl.obolibrary.org/obo/foodon/releases/2025-12-30/foodon.owl
    version: '2025-12-30'
    version_method: owl_version_iri
  - id: infores:hgnc
    name: HGNC
    urls: []
    version: unknown
    version_method: owl_version_iri
  - id: infores:monochrom
    name: MONOCHROM
    urls:
    - http://purl.obolibrary.org/obo/chr/releases/2025-10-15/chr-base.owl
    version: '2025-10-15'
    version_method: owl_version_iri
  - id: infores:mpath
    name: MPATH
    urls:
    - http://purl.obolibrary.org/obo/mpath/2020-05-19/mpath.owl
    version: '2020-05-19'
    version_method: owl_version_iri
  - id: infores:nbo
    name: NBO
    urls:
    - http://purl.obolibrary.org/obo/nbo/releases/2023-07-04/nbo.owl
    version: '2023-07-04'
    version_method: owl_version_iri
  - id: infores:ncbigene
    name: NCBIGENE
    urls: []
    version: unknown
    version_method: owl_version_iri
  - id: infores:ncbitaxon-taxslim
    name: NCBITAXON-TAXSLIM
    urls:
    - http://purl.obolibrary.org/obo/ncbitaxon/releases/2026-05-13/subsets/taxslim.owl
    version: '2026-05-13'
    version_method: owl_version_iri
  - id: infores:pato
    name: PATO
    urls:
    - http://purl.obolibrary.org/obo/pato/releases/2025-05-14/pato-base.owl
    version: '2025-05-14'
    version_method: owl_version_iri
  - id: infores:pr
    name: PR
    urls:
    - http://purl.obolibrary.org/obo/pr/obophenotype/releases/2026-06-18/pr_slim.owl
    version: '2026-06-18'
    version_method: owl_version_iri
  - id: infores:ro
    name: RO
    urls:
    - http://purl.obolibrary.org/obo/ro/releases/2025-12-17/ro-base.owl
    version: '2025-12-17'
    version_method: owl_version_iri
  - id: infores:so
    name: SO
    urls:
    - http://purl.obolibrary.org/obo/so/2024-11-18/so.owl
    version: '2024-11-18'
    version_method: owl_version_iri
  - id: infores:upheno-alignments
    name: UPHENO-ALIGNMENTS
    urls:
    - http://purl.obolibrary.org/obo/upheno/releases/2025-10-12/components/upheno-alignments.owl
    version: '2025-10-12'
    version_method: owl_version_iri
  - id: infores:upheno-bridge
    name: UPHENO-BRIDGE
    urls:
    - http://purl.obolibrary.org/obo/upheno/releases/2025-10-08/components/upheno-bridge.owl
    version: '2025-10-08'
    version_method: owl_version_iri
  - id: infores:wbls
    name: WBLS
    urls:
    - http://purl.obolibrary.org/obo/wbls/releases/2026-04-16/wbls-base.owl
    version: '2026-04-16'
    version_method: owl_version_iri
  - id: infores:zfs
    name: ZFS
    urls:
    - http://purl.obolibrary.org/obo/zfa/releases/2026-06-02/zfa.owl
    version: '2026-06-02'
    version_method: owl_version_iri
  - id: infores:cl
    name: CL
    urls:
    - http://purl.obolibrary.org/obo/cl/releases/2026-06-08/cl-base.owl
    version: '2026-06-08'
    version_method: owl_version_iri
  - id: infores:ddanat
    name: DDANAT
    urls: []
    version: '2026-07-07'
    version_method: owl_version_iri
  - id: infores:ddpheno
    name: DDPHENO
    urls:
    - http://purl.obolibrary.org/obo/ddpheno/releases/2023-08-26/ddpheno-base.owl
    version: '2023-08-26'
    version_method: owl_version_iri
  - id: infores:dpo
    name: DPO
    urls:
    - http://purl.obolibrary.org/obo/dpo/releases/2026-04-03/dpo-base.owl
    version: '2026-04-03'
    version_method: owl_version_iri
  - id: infores:emapa
    name: EMAPA
    urls:
    - http://purl.obolibrary.org/obo/emapa/releases/2026-06-26/emapa.owl
    version: '2026-07-07'
    version_method: owl_version_iri
  - id: infores:fbbt
    name: FBBT
    urls:
    - http://purl.obolibrary.org/obo/fbbt/releases/2026-06-11/fbbt.owl
    version: '2026-06-11'
    version_method: owl_version_iri
  - id: infores:fypo
    name: FYPO
    urls:
    - http://purl.obolibrary.org/obo/fypo/releases/2026-07-02/fypo-base.owl
    version: '2026-07-02'
    version_method: owl_version_iri
  - id: infores:go
    name: GO
    urls:
    - http://purl.obolibrary.org/obo/go/releases/2026-06-15/go-base.owl
    version: '2026-06-15'
    version_method: owl_version_iri
  - id: infores:hp
    name: HP
    urls:
    - http://purl.obolibrary.org/obo/hp/releases/2026-06-23/hp-base.owl
    version: '2026-06-23'
    version_method: owl_version_iri
  - id: infores:hsapdv
    name: HSAPDV
    urls:
    - http://purl.obolibrary.org/obo/life-stages/releases/2025-01-23/components/hsapdv.owl
    version: '2025-01-23'
    version_method: owl_version_iri
  - id: infores:maxo
    name: MAXO
    urls:
    - http://purl.obolibrary.org/obo/maxo/releases/2026-01-15/maxo-base.owl
    version: '2026-01-15'
    version_method: owl_version_iri
  - id: infores:mondo
    name: MONDO
    urls:
    - http://purl.obolibrary.org/obo/mondo/releases/2026-07-06/mondo-base.owl
    version: '2026-07-07'
    version_method: owl_version_iri
  - id: infores:mp
    name: MP
    urls:
    - http://purl.obolibrary.org/obo/mp/releases/2026-06-17/mp-base.owl
    version: '2026-06-17'
    version_method: owl_version_iri
  - id: infores:oba
    name: OBA
    urls:
    - http://purl.obolibrary.org/obo/oba/releases/2026-05-15/oba-base.owl
    version: '2026-05-15'
    version_method: owl_version_iri
  - id: infores:uberon
    name: UBERON
    urls:
    - http://purl.obolibrary.org/obo/uberon/releases/2026-06-19/uberon-base.owl
    version: '2026-06-19'
    version_method: owl_version_iri
  - id: infores:upheno
    name: UPHENO
    urls:
    - http://purl.obolibrary.org/obo/upheno/releases/2025-10-12/upheno-base.owl
    version: '2025-10-12'
    version_method: owl_version_iri
  - id: infores:wbbt
    name: WBBT
    urls:
    - http://purl.obolibrary.org/obo/wbbt/releases/2025-08-19/wbbt.owl
    version: '2026-07-07'
    version_method: owl_version_iri
  - id: infores:wbphenotype
    name: WBPHENOTYPE
    urls:
    - http://purl.obolibrary.org/obo/wbphenotype/releases/2026-04-15/wbphenotype-base.owl
    version: '2026-04-15'
    version_method: owl_version_iri
  - id: infores:xao
    name: XAO
    urls:
    - http://purl.obolibrary.org/obo/xao/releases/2024-09-03/xao.owl
    version: '2026-07-07'
    version_method: owl_version_iri
  - id: infores:xpo
    name: XPO
    urls:
    - http://purl.obolibrary.org/obo/xpo/releases/2025-07-25/xpo-base.owl
    version: '2025-07-25'
    version_method: owl_version_iri
  - id: infores:zfa
    name: ZFA
    urls:
    - http://purl.obolibrary.org/obo/zfa/releases/2026-06-02/zfa.owl
    version: '2026-06-02'
    version_method: owl_version_iri
  - id: infores:zp
    name: ZP
    urls:
    - http://purl.obolibrary.org/obo/zp/releases/2024-04-18/zp-base.owl
    version: '2024-04-18'
    version_method: owl_version_iri
  - id: infores:doid
    name: DOID
    urls:
    - http://purl.obolibrary.org/obo/doid/releases/2026-05-30/doid.owl
    version: '2026-05-30'
    version_method: owl_version_iri
  - id: infores:icd10cm
    name: ICD10CM
    urls:
    - https://data.bioontology.org/ontologies/ICD10CM/submissions/27/icd10cm.owl
    version: 2024ab
    version_method: owl_version_iri
  - id: infores:icd10who
    name: ICD10WHO
    urls: []
    version: unknown
    version_method: owl_version_iri
  - id: infores:icd11foundation
    name: ICD11FOUNDATION
    urls: []
    version: '2025-01-26'
    version_method: owl_version_iri
  - id: infores:ncit
    name: NCIT
    urls:
    - http://purl.obolibrary.org/obo/ncit/releases/2026-03-19/ncit.owl
    version: 26.02d
    version_method: owl_version_iri
  - id: infores:omim
    name: OMIM
    urls:
    - http://purl.obolibrary.org/obo/mondo/releases/2026-06-03/omim.owl
    version: '2026-06-03'
    version_method: owl_version_iri
  - id: infores:ordo
    name: ORDO
    urls:
    - https://www.orphadata.com/data/ontologies/ordo/last_version/ORDO_en_4.7.owl
    version: '4.7'
    version_method: owl_version_iri
- id: infores:upheno-cross-species
  name: UPheno cross-species mappings
  urls:
  - https://data.monarchinitiative.org/mappings/latest/upheno-cross-species.sssom.tsv
  version: '2026-07-05'
  version_method: http_last_modified
  retrieved_at: '2026-07-08T09:30:10Z'
- id: infores:upheno-species-independent
  name: UPheno species-independent mappings
  urls:
  - https://data.monarchinitiative.org/mappings/latest/upheno-species-independent.sssom.tsv
  version: '2026-07-05'
  version_method: http_last_modified
  retrieved_at: '2026-07-08T09:30:10Z'
artifacts:
- path: merged-kg.tar.gz
tools:
  koza: 1.0.0
  biolink_model: 4.2.5
  kghub_downloader: 0.4.5
