id: alliance-ingest
version: 9.1.0
transform_version: b0d7654e
biolink_version: 4.3.6
build_version: alliance-ingest_9.1.0_b0d7654e_4.3.6
generated_at: '2026-07-01T04:07:50Z'
sources:
- id: infores:agr
  name: Alliance of Genome Resources
  urls:
  - https://fms.alliancegenome.org/download/DISEASE-ALLIANCE_COMBINED.tsv.gz
  - https://fms.alliancegenome.org/download/PHENOTYPE_RGD.json.gz
  - https://fms.alliancegenome.org/download/PHENOTYPE_MGI.json.gz
  - https://fms.alliancegenome.org/download/PHENOTYPE_WB.json.gz
  - https://fms.alliancegenome.org/download/BGI_MGI.json.gz
  - https://fms.alliancegenome.org/download/BGI_RGD.json.gz
  - https://fms.alliancegenome.org/download/BGI_WB.json.gz
  - https://fms.alliancegenome.org/download/BGI_FB.json.gz
  - https://fms.alliancegenome.org/download/BGI_ZFIN.json.gz
  - https://fms.alliancegenome.org/download/BGI_SGD.json.gz
  - https://fms.alliancegenome.org/download/BGI_XBXL.json.gz
  - https://fms.alliancegenome.org/download/BGI_XBXT.json.gz
  - https://fms.alliancegenome.org/download/VARIANT-ALLELE_NCBITaxon6239.tsv.gz
  - https://fms.alliancegenome.org/download/VARIANT-ALLELE_NCBITaxon7955.tsv.gz
  - https://fms.alliancegenome.org/download/VARIANT-ALLELE_NCBITaxon10090.tsv.gz
  - https://fms.alliancegenome.org/download/VARIANT-ALLELE_NCBITaxon10116.tsv.gz
  - https://fms.alliancegenome.org/download/AGM_MGI.json.gz
  - https://fms.alliancegenome.org/download/AGM_ZFIN.json.gz
  - https://fms.alliancegenome.org/download/AGM_RGD.json.gz
  - https://fms.alliancegenome.org/download/EXPRESSION_RGD.json.gz
  - https://fms.alliancegenome.org/download/EXPRESSION_MGI.json.gz
  - https://fms.alliancegenome.org/download/EXPRESSION_ZFIN.json.gz
  - https://fms.alliancegenome.org/download/EXPRESSION_FB.json.gz
  - https://fms.alliancegenome.org/download/EXPRESSION_WB.json.gz
  - https://fms.alliancegenome.org/download/EXPRESSION_SGD.json.gz
  version: 9.1.0
  version_method: alliance_fms_api
  retrieved_at: '2026-07-01T04:07:49Z'
  sources:
  - id: infores:flybase
    name: FlyBase
    urls:
    - https://fms.alliancegenome.org/download/BGI_FB.json.gz
    - https://fms.alliancegenome.org/download/EXPRESSION_FB.json.gz
    version: '2026-03-05'
    version_method: alliance_fms_submission
    retrieved_at: '2026-07-01T04:07:49Z'
  - id: infores:mgi
    name: Mouse Genome Informatics
    urls:
    - https://fms.alliancegenome.org/download/AGM_MGI.json.gz
    - https://fms.alliancegenome.org/download/BGI_MGI.json.gz
    - https://fms.alliancegenome.org/download/EXPRESSION_MGI.json.gz
    - https://fms.alliancegenome.org/download/PHENOTYPE_MGI.json.gz
    version: '2026-04-24'
    version_method: alliance_fms_submission
    retrieved_at: '2026-07-01T04:07:49Z'
  - id: infores:rgd
    name: Rat Genome Database
    urls:
    - https://fms.alliancegenome.org/download/AGM_RGD.json.gz
    - https://fms.alliancegenome.org/download/BGI_RGD.json.gz
    - https://fms.alliancegenome.org/download/EXPRESSION_RGD.json.gz
    - https://fms.alliancegenome.org/download/PHENOTYPE_RGD.json.gz
    version: '2026-03-06'
    version_method: alliance_fms_submission
    retrieved_at: '2026-07-01T04:07:49Z'
  - id: infores:sgd
    name: Saccharomyces Genome Database
    urls:
    - https://fms.alliancegenome.org/download/BGI_SGD.json.gz
    - https://fms.alliancegenome.org/download/EXPRESSION_SGD.json.gz
    version: '2026-03-18'
    version_method: alliance_fms_submission
    retrieved_at: '2026-07-01T04:07:49Z'
  - id: infores:wormbase
    name: WormBase
    urls:
    - https://fms.alliancegenome.org/download/BGI_WB.json.gz
    - https://fms.alliancegenome.org/download/EXPRESSION_WB.json.gz
    - https://fms.alliancegenome.org/download/PHENOTYPE_WB.json.gz
    version: '2025-11-13'
    version_method: alliance_fms_submission
    retrieved_at: '2026-07-01T04:07:49Z'
  - id: infores:xenbase
    name: Xenbase
    urls:
    - https://fms.alliancegenome.org/download/BGI_XBXL.json.gz
    - https://fms.alliancegenome.org/download/BGI_XBXT.json.gz
    version: '2026-03-25'
    version_method: alliance_fms_submission
    retrieved_at: '2026-07-01T04:07:49Z'
  - id: infores:zfin
    name: ZFIN
    urls:
    - https://fms.alliancegenome.org/download/AGM_ZFIN.json.gz
    - https://fms.alliancegenome.org/download/BGI_ZFIN.json.gz
    - https://fms.alliancegenome.org/download/EXPRESSION_ZFIN.json.gz
    version: '2026-03-17'
    version_method: alliance_fms_submission
    retrieved_at: '2026-07-01T04:07:49Z'
artifacts:
- path: alliance_allele_edges.tsv
  sha256: 8d69007125b09911ed1032b5bce42b9280140aed81c0e839015d6d80cc4e3f89
- path: alliance_allele_nodes.tsv
  sha256: 449a1168e5105d3af7dbdc5a1b03eed66889d2759cf8b4fcfdb235d4f96320c4
- path: alliance_disease_edges.tsv
  sha256: b230aa2c2d58ae097205293375b538a6fad63a25e2db3c38a7ec3243c923a933
- path: alliance_gene_nodes.tsv
  sha256: 49609c23e20834299546b9aa700e9a274edefe5bc103e26e41e2ac1ffddb9204
- path: alliance_gene_to_expression_edges.tsv
  sha256: 6a96c4357d5e582eb00f23147eafe8ccc7bedc0a1b9ae6dd597525fb0dda26e7
- path: alliance_genotype_edges.tsv
  sha256: 5dfcf2097c50fd33043f13238e2be992998f8467b3e5225554c4d66d35352f55
- path: alliance_genotype_nodes.tsv
  sha256: 18e1e4f86f493b1e0ae76989b7e9fb82220ab3111fe992d7fb90b885fb09d64f
- path: alliance_phenotype_edges.tsv
  sha256: 9c9e59ebbe60b6518e511e6612cfd31c3eb736c3f3727e4b29f5b1b746828b8a
tools:
  koza: 2.1.1
  biolink_model: 4.3.6
  kghub_downloader: 0.4.4
