dangling_edges:
- categories:
  - biolink:GeneToExpressionSiteAssociation
  missing: 115
  name: alliance_gene_to_expression_edges
  namespaces:
  - EMAPA
  - FB
  - GO
  - MGI
  - RGD
  - ZFA
  - ZFIN
  node_types:
  - categories:
    - biolink:AnatomicalEntity
    - biolink:Cell
    - biolink:CellularComponent
    - biolink:GrossAnatomicalStructure
    - biolink:MacromolecularComplexMixin
    - biolink:NamedThing
    missing: 285
    name: phenio_nodes
    namespaces:
    - EMAPA
    - GO
    - ZFA
    taxon:
    - missing taxon
    total_number: 285
  predicates:
  - missing_object_namespaces: []
    missing_objects: 0
    missing_subject_namespaces:
    - FB
    - MGI
    - RGD
    - ZFIN
    missing_subjects: 115
    total_number: 1267
    uri: biolink:expressed_in
  total_number: 1267
- categories:
  - biolink:GeneToPhenotypicFeatureAssociation
  missing: 31
  name: alliance_gene_to_phenotype_edges
  namespaces:
  - MGI
  - MP
  - RGD
  node_types:
  - categories:
    - biolink:Gene
    missing: 103
    name: alliance_gene_nodes
    namespaces:
    - MGI
    - RGD
    taxon:
    - NCBITaxon:10090
    - NCBITaxon:10116
    total_number: 103
  predicates:
  - missing_object_namespaces:
    - MP
    missing_objects: 31
    missing_subject_namespaces: []
    missing_subjects: 0
    total_number: 114
    uri: biolink:has_phenotype
  total_number: 114
- categories:
  - biolink:GeneToExpressionSiteAssociation
  missing: 40101
  name: bgee_gene_to_expression_edges
  namespaces:
  - CL
  - ENSEMBL
  - NCBIGene
  - UBERON
  node_types:
  - categories:
    - biolink:Gene
    missing: 15434
    name: ncbi_gene_nodes
    namespaces:
    - NCBIGene
    taxon:
    - NCBITaxon:9823
    - NCBITaxon:9913
    total_number: 15434
  - categories:
    - biolink:AnatomicalEntity
    - biolink:GrossAnatomicalStructure
    missing: 157
    name: phenio_nodes
    namespaces:
    - UBERON
    taxon:
    - missing taxon
    total_number: 157
  predicates:
  - missing_object_namespaces:
    - CL
    missing_objects: 11
    missing_subject_namespaces:
    - ENSEMBL
    missing_subjects: 40090
    total_number: 266654
    uri: biolink:expressed_in
  total_number: 266654
- categories:
  - biolink:ChemicalToDiseaseOrPhenotypicFeatureAssociation
  missing: 7694
  name: ctd_chemical_to_disease_edges
  namespaces:
  - MESH
  - MONDO
  node_types:
  - categories:
    - biolink:Disease
    missing: 1687
    name: phenio_nodes
    namespaces:
    - MONDO
    taxon:
    - missing taxon
    total_number: 1687
  predicates:
  - missing_object_namespaces:
    - MESH
    - MONDO
    missing_objects: 797
    missing_subject_namespaces:
    - MESH
    missing_subjects: 6897
    total_number: 37703
    uri: biolink:treats
  total_number: 37703
- categories:
  - biolink:GeneToPhenotypicFeatureAssociation
  missing: 170
  name: dictybase_gene_to_phenotype_edges
  namespaces:
  - DDPHENO
  - dictyBase
  node_types:
  - categories:
    - biolink:Gene
    missing: 507
    name: dictybase_gene_nodes
    namespaces:
    - dictyBase
    taxon:
    - NCBITaxon:44689
    total_number: 507
  predicates:
  - missing_object_namespaces:
    - DDPHENO
    missing_objects: 170
    missing_subject_namespaces: []
    missing_subjects: 0
    total_number: 1216
    uri: biolink:has_phenotype
  total_number: 1216
- categories:
  - biolink:MacromolecularMachineToBiologicalProcessAssociation
  - biolink:MacromolecularMachineToCellularComponentAssociation
  - biolink:MacromolecularMachineToMolecularActivityAssociation
  missing: 98626
  name: goa_go_annotation_edges
  namespaces:
  - AspGD
  - EFO
  - FB
  - GO
  - HGNC
  - MGI
  - PR
  - PomBase
  - RGD
  - RefSeq
  - SGD
  - UniProtKB
  - WB
  - ZFIN
  - dictyBase
  node_types:
  - categories:
    - biolink:Gene
    missing: 91
    name: alliance_gene_nodes
    namespaces:
    - MGI
    - RGD
    - SGD
    taxon:
    - NCBITaxon:10090
    - NCBITaxon:10116
    - NCBITaxon:559292
    total_number: 91
  - categories:
    - biolink:Gene
    missing: 25
    name: dictybase_gene_nodes
    namespaces:
    - dictyBase
    taxon:
    - NCBITaxon:44689
    total_number: 25
  - categories:
    - biolink:Gene
    missing: 38
    name: hgnc_gene_nodes
    namespaces:
    - HGNC
    taxon:
    - NCBITaxon:9606
    total_number: 38
  - categories:
    - biolink:BiologicalProcess
    - biolink:CellularComponent
    - biolink:MacromolecularComplexMixin
    - biolink:MolecularActivity
    - biolink:NamedThing
    - biolink:Occurrent
    - biolink:Pathway
    missing: 18090
    name: phenio_nodes
    namespaces:
    - GO
    taxon:
    - missing taxon
    total_number: 18090
  - categories:
    - biolink:Gene
    missing: 28
    name: pombase_gene_nodes
    namespaces:
    - PomBase
    taxon:
    - NCBITaxon:4896
    total_number: 28
  predicates:
  - missing_object_namespaces: []
    missing_objects: 0
    missing_subject_namespaces:
    - AspGD
    - FB
    - MGI
    - PR
    - PomBase
    - RGD
    - SGD
    - UniProtKB
    - ZFIN
    missing_subjects: 17609
    total_number: 22496
    uri: biolink:active_in
  - missing_object_namespaces:
    - EFO
    - GO
    missing_objects: 11
    missing_subject_namespaces:
    - AspGD
    - FB
    - MGI
    - PR
    - PomBase
    - RGD
    - SGD
    - UniProtKB
    - ZFIN
    missing_subjects: 72100
    total_number: 266969
    uri: biolink:actively_involved_in
  - missing_object_namespaces: []
    missing_objects: 0
    missing_subject_namespaces:
    - MGI
    - PR
    - UniProtKB
    missing_subjects: 45
    total_number: 64
    uri: biolink:acts_upstream_of
  - missing_object_namespaces: []
    missing_objects: 0
    missing_subject_namespaces:
    - UniProtKB
    missing_subjects: 4
    total_number: 8
    uri: biolink:acts_upstream_of_negative_effect
  - missing_object_namespaces:
    - GO
    missing_objects: 3
    missing_subject_namespaces:
    - AspGD
    - MGI
    - PR
    - RGD
    - SGD
    - UniProtKB
    - WB
    missing_subjects: 2035
    total_number: 4204
    uri: biolink:acts_upstream_of_or_within
  - missing_object_namespaces: []
    missing_objects: 0
    missing_subject_namespaces:
    - PR
    missing_subjects: 1
    total_number: 2
    uri: biolink:acts_upstream_of_or_within_negative_effect
  - missing_object_namespaces: []
    missing_objects: 0
    missing_subject_namespaces:
    - PR
    - UniProtKB
    missing_subjects: 6
    total_number: 8
    uri: biolink:acts_upstream_of_or_within_positive_effect
  - missing_object_namespaces: []
    missing_objects: 0
    missing_subject_namespaces:
    - UniProtKB
    missing_subjects: 13
    total_number: 18
    uri: biolink:acts_upstream_of_positive_effect
  - missing_object_namespaces: []
    missing_objects: 0
    missing_subject_namespaces:
    - AspGD
    - RGD
    - UniProtKB
    missing_subjects: 232
    total_number: 294
    uri: biolink:colocalizes_with
  - missing_object_namespaces: []
    missing_objects: 0
    missing_subject_namespaces:
    - AspGD
    - PR
    - PomBase
    - RGD
    - UniProtKB
    - ZFIN
    missing_subjects: 485
    total_number: 603
    uri: biolink:contributes_to
  - missing_object_namespaces:
    - GO
    missing_objects: 18
    missing_subject_namespaces:
    - AspGD
    - FB
    - MGI
    - PR
    - PomBase
    - RGD
    - RefSeq
    - SGD
    - UniProtKB
    - WB
    - ZFIN
    missing_subjects: 70081
    total_number: 141970
    uri: biolink:enables
  - missing_object_namespaces: []
    missing_objects: 0
    missing_subject_namespaces:
    - AspGD
    - FB
    - MGI
    - PR
    - RGD
    - SGD
    - UniProtKB
    missing_subjects: 55771
    total_number: 110993
    uri: biolink:located_in
  - missing_object_namespaces:
    - GO
    missing_objects: 1
    missing_subject_namespaces:
    - AspGD
    - FB
    - MGI
    - PR
    - PomBase
    - RGD
    - SGD
    - UniProtKB
    - ZFIN
    missing_subjects: 16261
    total_number: 20869
    uri: biolink:part_of
  total_number: 568498
- categories:
  - biolink:DiseaseOrPhenotypicFeatureToGeneticInheritanceAssociation
  missing: 226
  name: hpoa_disease_mode_of_inheritance_edges
  namespaces:
  - DECIPHER
  - HP
  - MONDO
  - OMIM
  node_types:
  - categories:
    - biolink:GeneticInheritance
    missing: 7
    name: phenio_nodes
    namespaces:
    - HP
    taxon:
    - missing taxon
    total_number: 7
  predicates:
  - missing_object_namespaces: []
    missing_objects: 0
    missing_subject_namespaces:
    - DECIPHER
    - MONDO
    - OMIM
    missing_subjects: 226
    total_number: 232
    uri: biolink:has_mode_of_inheritance
  total_number: 232
- categories:
  - biolink:DiseaseToPhenotypicFeatureAssociation
  missing: 404
  name: hpoa_disease_phenotype_edges
  namespaces:
  - DECIPHER
  - HP
  - MONDO
  - OMIM
  - Orphanet
  node_types:
  - categories:
    - biolink:Disease
    - biolink:PhenotypicQuality
    missing: 2068
    name: phenio_nodes
    namespaces:
    - HP
    - MONDO
    taxon:
    - missing taxon
    total_number: 2068
  predicates:
  - missing_object_namespaces:
    - HP
    missing_objects: 121
    missing_subject_namespaces:
    - DECIPHER
    - MONDO
    - OMIM
    - Orphanet
    missing_subjects: 283
    total_number: 6401
    uri: biolink:has_phenotype
  total_number: 6401
- categories:
  - biolink:GeneToPhenotypicFeatureAssociation
  missing: 129
  name: hpoa_gene_to_phenotype_edges
  namespaces:
  - HGNC
  - HP
  - NCBIGene
  - hpo_id
  node_types:
  - categories:
    - biolink:Gene
    missing: 178
    name: hgnc_gene_nodes
    namespaces:
    - HGNC
    taxon:
    - NCBITaxon:9606
    total_number: 178
  - categories:
    - biolink:GeneticInheritance
    - biolink:Onset
    - biolink:PhenotypicQuality
    missing: 228
    name: phenio_nodes
    namespaces:
    - HP
    taxon:
    - missing taxon
    total_number: 228
  predicates:
  - missing_object_namespaces:
    - HP
    - hpo_id
    missing_objects: 123
    missing_subject_namespaces:
    - NCBIGene
    missing_subjects: 6
    total_number: 457
    uri: biolink:has_phenotype
  total_number: 457
- categories:
  - biolink:GeneToGeneHomologyAssociation
  missing: 59951
  name: panther_genome_orthologs_edges
  namespaces:
  - ENSEMBL
  - FB
  - HGNC
  - MGI
  - NCBIGene
  - POMBASE
  - RGD
  - SGD
  - UniProtKB
  - WB
  - Xenbase
  - ZFIN
  - dictyBase
  node_types:
  - categories:
    - biolink:Gene
    missing: 68523
    name: alliance_gene_nodes
    namespaces:
    - FB
    - MGI
    - RGD
    - SGD
    - WB
    - Xenbase
    - ZFIN
    taxon:
    - NCBITaxon:10090
    - NCBITaxon:10116
    - NCBITaxon:559292
    - NCBITaxon:6239
    - NCBITaxon:7227
    - NCBITaxon:7955
    - NCBITaxon:8364
    - missing taxon
    total_number: 91307
  - categories:
    - biolink:Gene
    missing: 5877
    name: dictybase_gene_nodes
    namespaces:
    - dictyBase
    taxon:
    - NCBITaxon:44689
    total_number: 5877
  - categories:
    - biolink:Gene
    missing: 18913
    name: hgnc_gene_nodes
    namespaces:
    - HGNC
    taxon:
    - NCBITaxon:9606
    - missing taxon
    total_number: 18913
  - categories:
    - biolink:Gene
    missing: 30638
    name: ncbi_gene_nodes
    namespaces:
    - NCBIGene
    taxon:
    - NCBITaxon:9615
    - NCBITaxon:9823
    - NCBITaxon:9913
    total_number: 32316
  predicates:
  - missing_object_namespaces:
    - ENSEMBL
    - FB
    - MGI
    - NCBIGene
    - POMBASE
    - RGD
    - UniProtKB
    - WB
    - Xenbase
    - ZFIN
    missing_objects: 57021
    missing_subject_namespaces:
    - ENSEMBL
    - FB
    - HGNC
    - MGI
    - NCBIGene
    - POMBASE
    - RGD
    - UniProtKB
    - WB
    - Xenbase
    - ZFIN
    missing_subjects: 55081
    total_number: 999868
    uri: biolink:orthologous_to
  total_number: 999868
- categories:
  - biolink:GeneToPhenotypicFeatureAssociation
  missing: 6192
  name: pombase_gene_to_phenotype_edges
  namespaces:
  - FYPO
  - PomBase
  node_types:
  - categories:
    - biolink:Gene
    missing: 4968
    name: pombase_gene_nodes
    namespaces:
    - PomBase
    taxon:
    - NCBITaxon:4896
    total_number: 4968
  predicates:
  - missing_object_namespaces:
    - FYPO
    missing_objects: 6021
    missing_subject_namespaces:
    - PomBase
    missing_subjects: 171
    total_number: 92795
    uri: biolink:has_phenotype
  total_number: 92795
- categories:
  - biolink:ChemicalToPathwayAssociation
  missing: 2006
  name: reactome_chemical_to_pathway_edges
  namespaces:
  - CHEBI
  - REACT
  node_types:
  - categories:
    - biolink:Pathway
    missing: 8589
    name: reactome_pathway_nodes
    namespaces:
    - REACT
    taxon:
    - NCBITaxon:10090
    - NCBITaxon:10116
    - NCBITaxon:44689
    - NCBITaxon:4896
    - NCBITaxon:4932
    - NCBITaxon:6239
    - NCBITaxon:7227
    - NCBITaxon:7955
    - NCBITaxon:8364
    - NCBITaxon:9031
    - NCBITaxon:9606
    - NCBITaxon:9615
    - NCBITaxon:9823
    - NCBITaxon:9913
    total_number: 8589
  predicates:
  - missing_object_namespaces: []
    missing_objects: 0
    missing_subject_namespaces:
    - CHEBI
    missing_subjects: 2006
    total_number: 43171
    uri: biolink:participates_in
  total_number: 43171
- categories:
  - biolink:GeneToPathwayAssociation
  missing: 54253
  name: reactome_gene_to_pathway_edges
  namespaces:
  - NCBIGene
  - REACT
  - UniProtKB
  node_types:
  - categories:
    - biolink:Pathway
    missing: 13350
    name: reactome_pathway_nodes
    namespaces:
    - REACT
    taxon:
    - NCBITaxon:10090
    - NCBITaxon:10116
    - NCBITaxon:44689
    - NCBITaxon:4896
    - NCBITaxon:4932
    - NCBITaxon:6239
    - NCBITaxon:7227
    - NCBITaxon:7955
    - NCBITaxon:8364
    - NCBITaxon:9031
    - NCBITaxon:9606
    - NCBITaxon:9615
    - NCBITaxon:9823
    - NCBITaxon:9913
    total_number: 13350
  predicates:
  - missing_object_namespaces: []
    missing_objects: 0
    missing_subject_namespaces:
    - NCBIGene
    - UniProtKB
    missing_subjects: 54253
    total_number: 185688
    uri: biolink:participates_in
  total_number: 185688
- categories:
  - biolink:PairwiseGeneToGeneInteraction
  missing: 102381
  name: string_protein_links_edges
  namespaces:
  - HGNC
  - NCBIGene
  - UniProtKB
  node_types:
  - categories:
    - biolink:Gene
    missing: 0
    name: hgnc_gene_nodes
    namespaces:
    - HGNC
    taxon:
    - NCBITaxon:9606
    total_number: 865
  - categories:
    - biolink:Gene
    missing: 0
    name: ncbi_gene_nodes
    namespaces:
    - NCBIGene
    taxon:
    - NCBITaxon:227321
    - NCBITaxon:9031
    - NCBITaxon:9913
    total_number: 2963
  predicates:
  - missing_object_namespaces:
    - NCBIGene
    - UniProtKB
    missing_objects: 102381
    missing_subject_namespaces:
    - NCBIGene
    - UniProtKB
    missing_subjects: 102381
    total_number: 2630948
    uri: biolink:interacts_with
  total_number: 2630948
- categories:
  - biolink:GeneToPhenotypicFeatureAssociation
  missing: 63
  name: xenbase_gene_to_phenotype_edges
  namespaces:
  - XPO
  - Xenbase
  node_types:
  - categories:
    - biolink:Gene
    missing: 4
    name: alliance_gene_nodes
    namespaces:
    - Xenbase
    taxon:
    - NCBITaxon:8355
    - NCBITaxon:8364
    total_number: 4
  - categories:
    - biolink:PhenotypicQuality
    missing: 146
    name: phenio_nodes
    namespaces:
    - XPO
    taxon:
    - missing taxon
    total_number: 146
  predicates:
  - missing_object_namespaces:
    - XPO
    missing_objects: 2
    missing_subject_namespaces:
    - Xenbase
    missing_subjects: 61
    total_number: 275
    uri: biolink:has_phenotype
  total_number: 275
- categories:
  - biolink:GeneToGeneHomologyAssociation
  missing: 15303
  name: xenbase_non_entrez_orthologs_edges
  namespaces:
  - HGNC
  - MGI
  - OMIM
  - Xenbase
  - ZFIN
  node_types:
  - categories:
    - biolink:Gene
    missing: 26557
    name: alliance_gene_nodes
    namespaces:
    - MGI
    - ZFIN
    taxon:
    - NCBITaxon:10090
    - NCBITaxon:7955
    - missing taxon
    total_number: 26557
  - categories:
    - biolink:Gene
    missing: 12399
    name: hgnc_gene_nodes
    namespaces:
    - HGNC
    taxon:
    - NCBITaxon:9606
    total_number: 12399
  predicates:
  - missing_object_namespaces:
    - MGI
    - OMIM
    - ZFIN
    missing_objects: 348
    missing_subject_namespaces:
    - Xenbase
    missing_subjects: 14955
    total_number: 44287
    uri: biolink:orthologous_to
  total_number: 44287
- categories:
  - biolink:GeneToGeneHomologyAssociation
  missing: 44287
  name: xenbase_orthologs_edges
  namespaces:
  - HGNC
  - NCBIGene
  - Xenbase
  node_types:
  - categories:
    - biolink:Gene
    missing: 14918
    name: hgnc_gene_nodes
    namespaces:
    - HGNC
    taxon:
    - NCBITaxon:9606
    - missing taxon
    total_number: 14918
  predicates:
  - missing_object_namespaces:
    - NCBIGene
    missing_objects: 28688
    missing_subject_namespaces:
    - Xenbase
    missing_subjects: 15599
    total_number: 45104
    uri: biolink:orthologous_to
  total_number: 45104
- categories:
  - biolink:GeneToPhenotypicFeatureAssociation
  missing: 1619
  name: zfin_gene_to_phenotype_edges
  namespaces:
  - ZFIN
  - ZP
  node_types:
  - categories:
    - biolink:Gene
    missing: 451
    name: alliance_gene_nodes
    namespaces:
    - ZFIN
    taxon:
    - NCBITaxon:7955
    total_number: 451
  predicates:
  - missing_object_namespaces:
    - ZP
    missing_objects: 1619
    missing_subject_namespaces: []
    missing_subjects: 0
    total_number: 2883
    uri: biolink:has_phenotype
  total_number: 2883
edges:
- categories:
  - biolink:GeneToExpressionSiteAssociation
  missing: 0
  name: alliance_gene_to_expression_edges
  namespaces:
  - EMAPA
  - FB
  - FBbt
  - GO
  - MGI
  - RGD
  - SGD
  - WB
  - WBbt
  - ZFA
  - ZFIN
  node_types:
  - categories:
    - biolink:Gene
    missing: 54151
    name: alliance_gene_nodes
    namespaces:
    - FB
    - MGI
    - RGD
    - SGD
    - WB
    - ZFIN
    taxon:
    - NCBITaxon:10090
    - NCBITaxon:10116
    - NCBITaxon:559292
    - NCBITaxon:6239
    - NCBITaxon:7227
    - NCBITaxon:7955
    - missing taxon
    total_number: 54151
  - categories:
    - biolink:AnatomicalEntity
    - biolink:Cell
    - biolink:CellularComponent
    - biolink:GrossAnatomicalStructure
    - biolink:MacromolecularComplexMixin
    - biolink:NamedThing
    missing: 13368
    name: phenio_nodes
    namespaces:
    - EMAPA
    - FBbt
    - GO
    - WBbt
    - ZFA
    taxon:
    - missing taxon
    total_number: 13368
  predicates:
  - missing_object_namespaces: []
    missing_objects: 0
    missing_subject_namespaces: []
    missing_subjects: 0
    total_number: 1790844
    uri: biolink:expressed_in
  total_number: 1790844
- categories:
  - biolink:GeneToPhenotypicFeatureAssociation
  missing: 0
  name: alliance_gene_to_phenotype_edges
  namespaces:
  - MGI
  - MP
  - RGD
  - WB
  - WBPhenotype
  node_types:
  - categories:
    - biolink:Gene
    missing: 19669
    name: alliance_gene_nodes
    namespaces:
    - MGI
    - RGD
    - WB
    taxon:
    - NCBITaxon:10090
    - NCBITaxon:10116
    - NCBITaxon:6239
    - missing taxon
    total_number: 19669
  - categories:
    - biolink:PhenotypicQuality
    missing: 12258
    name: phenio_nodes
    namespaces:
    - MP
    - WBPhenotype
    taxon:
    - missing taxon
    total_number: 12258
  predicates:
  - missing_object_namespaces: []
    missing_objects: 0
    missing_subject_namespaces: []
    missing_subjects: 0
    total_number: 298084
    uri: biolink:has_phenotype
  total_number: 298084
- categories:
  - biolink:GeneToExpressionSiteAssociation
  missing: 0
  name: bgee_gene_to_expression_edges
  namespaces:
  - NCBIGene
  - UBERON
  node_types:
  - categories:
    - biolink:Gene
    missing: 31877
    name: ncbi_gene_nodes
    namespaces:
    - NCBIGene
    taxon:
    - NCBITaxon:9823
    - NCBITaxon:9913
    total_number: 31877
  - categories:
    - biolink:AnatomicalEntity
    - biolink:GrossAnatomicalStructure
    missing: 139
    name: phenio_nodes
    namespaces:
    - UBERON
    taxon:
    - missing taxon
    total_number: 139
  predicates:
  - missing_object_namespaces: []
    missing_objects: 0
    missing_subject_namespaces: []
    missing_subjects: 0
    total_number: 236565
    uri: biolink:expressed_in
  total_number: 236565
- categories:
  - biolink:MacromolecularMachineToBiologicalProcessAssociation
  - biolink:MacromolecularMachineToCellularComponentAssociation
  - biolink:MacromolecularMachineToMolecularActivityAssociation
  missing: 0
  name: goa_go_annotation_edges
  namespaces:
  - FB
  - GO
  - HGNC
  - MGI
  - PomBase
  - RGD
  - SGD
  - WB
  - ZFIN
  - dictyBase
  node_types:
  - categories:
    - biolink:Gene
    missing: 111227
    name: alliance_gene_nodes
    namespaces:
    - FB
    - MGI
    - RGD
    - SGD
    - WB
    - ZFIN
    taxon:
    - NCBITaxon:10090
    - NCBITaxon:10116
    - NCBITaxon:559292
    - NCBITaxon:6239
    - NCBITaxon:7227
    - NCBITaxon:7955
    - missing taxon
    total_number: 111227
  - categories:
    - biolink:Gene
    missing: 9495
    name: dictybase_gene_nodes
    namespaces:
    - dictyBase
    taxon:
    - NCBITaxon:44689
    total_number: 9495
  - categories:
    - biolink:Gene
    missing: 19587
    name: hgnc_gene_nodes
    namespaces:
    - HGNC
    taxon:
    - NCBITaxon:9606
    - missing taxon
    total_number: 19587
  - categories:
    - biolink:CellularComponent
    - biolink:MacromolecularComplexMixin
    - biolink:MolecularActivity
    - biolink:Occurrent
    - biolink:Pathway
    missing: 24254
    name: phenio_nodes
    namespaces:
    - GO
    taxon:
    - missing taxon
    total_number: 24254
  - categories:
    - biolink:Gene
    missing: 5070
    name: pombase_gene_nodes
    namespaces:
    - PomBase
    taxon:
    - NCBITaxon:4896
    total_number: 5070
  predicates:
  - missing_object_namespaces: []
    missing_objects: 0
    missing_subject_namespaces: []
    missing_subjects: 0
    total_number: 132298
    uri: biolink:active_in
  - missing_object_namespaces: []
    missing_objects: 0
    missing_subject_namespaces: []
    missing_subjects: 0
    total_number: 672596
    uri: biolink:actively_involved_in
  - missing_object_namespaces: []
    missing_objects: 0
    missing_subject_namespaces: []
    missing_subjects: 0
    total_number: 9233
    uri: biolink:acts_upstream_of
  - missing_object_namespaces: []
    missing_objects: 0
    missing_subject_namespaces: []
    missing_subjects: 0
    total_number: 161
    uri: biolink:acts_upstream_of_negative_effect
  - missing_object_namespaces: []
    missing_objects: 0
    missing_subject_namespaces: []
    missing_subjects: 0
    total_number: 197038
    uri: biolink:acts_upstream_of_or_within
  - missing_object_namespaces: []
    missing_objects: 0
    missing_subject_namespaces: []
    missing_subjects: 0
    total_number: 181
    uri: biolink:acts_upstream_of_or_within_negative_effect
  - missing_object_namespaces: []
    missing_objects: 0
    missing_subject_namespaces: []
    missing_subjects: 0
    total_number: 450
    uri: biolink:acts_upstream_of_or_within_positive_effect
  - missing_object_namespaces: []
    missing_objects: 0
    missing_subject_namespaces: []
    missing_subjects: 0
    total_number: 300
    uri: biolink:acts_upstream_of_positive_effect
  - missing_object_namespaces: []
    missing_objects: 0
    missing_subject_namespaces: []
    missing_subjects: 0
    total_number: 3987
    uri: biolink:colocalizes_with
  - missing_object_namespaces: []
    missing_objects: 0
    missing_subject_namespaces: []
    missing_subjects: 0
    total_number: 6803
    uri: biolink:contributes_to
  - missing_object_namespaces: []
    missing_objects: 0
    missing_subject_namespaces: []
    missing_subjects: 0
    total_number: 780285
    uri: biolink:enables
  - missing_object_namespaces: []
    missing_objects: 0
    missing_subject_namespaces: []
    missing_subjects: 0
    total_number: 447298
    uri: biolink:located_in
  - missing_object_namespaces: []
    missing_objects: 0
    missing_subject_namespaces: []
    missing_subjects: 0
    total_number: 82621
    uri: biolink:part_of
  total_number: 2333251
- categories:
  - biolink:DiseaseOrPhenotypicFeatureToGeneticInheritanceAssociation
  missing: 0
  name: hpoa_disease_mode_of_inheritance_edges
  namespaces:
  - HGNC
  - HP
  - MONDO
  node_types:
  - categories:
    - biolink:Gene
    missing: 6
    name: hgnc_gene_nodes
    namespaces:
    - HGNC
    taxon:
    - NCBITaxon:9606
    total_number: 6
  - categories:
    - biolink:Disease
    - biolink:GeneticInheritance
    missing: 7782
    name: phenio_nodes
    namespaces:
    - HP
    - MONDO
    taxon:
    - missing taxon
    total_number: 7782
  predicates:
  - missing_object_namespaces: []
    missing_objects: 0
    missing_subject_namespaces: []
    missing_subjects: 0
    total_number: 8216
    uri: biolink:has_mode_of_inheritance
  total_number: 8216
- categories:
  - biolink:DiseaseToPhenotypicFeatureAssociation
  missing: 0
  name: hpoa_disease_phenotype_edges
  namespaces:
  - HGNC
  - HP
  - MONDO
  node_types:
  - categories:
    - biolink:Gene
    missing: 7
    name: hgnc_gene_nodes
    namespaces:
    - HGNC
    taxon:
    - NCBITaxon:9606
    total_number: 7
  - categories:
    - biolink:Disease
    - biolink:PhenotypicQuality
    missing: 20389
    name: phenio_nodes
    namespaces:
    - HP
    - MONDO
    taxon:
    - missing taxon
    total_number: 20389
  predicates:
  - missing_object_namespaces: []
    missing_objects: 0
    missing_subject_namespaces: []
    missing_subjects: 0
    total_number: 233654
    uri: biolink:has_phenotype
  total_number: 233654
- categories:
  - biolink:GeneToPhenotypicFeatureAssociation
  missing: 0
  name: hpoa_gene_to_phenotype_edges
  namespaces:
  - HGNC
  - HP
  node_types:
  - categories:
    - biolink:Gene
    missing: 4917
    name: hgnc_gene_nodes
    namespaces:
    - HGNC
    taxon:
    - NCBITaxon:9606
    total_number: 4917
  - categories:
    - biolink:ClinicalModifier
    - biolink:GeneticInheritance
    - biolink:Onset
    - biolink:PhenotypicQuality
    missing: 9478
    name: phenio_nodes
    namespaces:
    - HP
    taxon:
    - missing taxon
    total_number: 9478
  predicates:
  - missing_object_namespaces: []
    missing_objects: 0
    missing_subject_namespaces: []
    missing_subjects: 0
    total_number: 237812
    uri: biolink:has_phenotype
  total_number: 237812
- categories:
  - biolink:GeneToGeneHomologyAssociation
  missing: 0
  name: panther_genome_orthologs_edges
  namespaces:
  - FB
  - HGNC
  - MGI
  - NCBIGene
  - RGD
  - SGD
  - WB
  - Xenbase
  - ZFIN
  - dictyBase
  node_types:
  - categories:
    - biolink:Gene
    missing: 15191
    name: alliance_gene_nodes
    namespaces:
    - FB
    - MGI
    - RGD
    - SGD
    - WB
    - Xenbase
    - ZFIN
    taxon:
    - NCBITaxon:10090
    - NCBITaxon:10116
    - NCBITaxon:559292
    - NCBITaxon:6239
    - NCBITaxon:7227
    - NCBITaxon:7955
    - NCBITaxon:8364
    - missing taxon
    total_number: 92564
  - categories:
    - biolink:Gene
    missing: 5756
    name: dictybase_gene_nodes
    namespaces:
    - dictyBase
    taxon:
    - NCBITaxon:44689
    total_number: 5756
  - categories:
    - biolink:Gene
    missing: 19081
    name: hgnc_gene_nodes
    namespaces:
    - HGNC
    taxon:
    - NCBITaxon:9606
    - missing taxon
    total_number: 19081
  - categories:
    - biolink:Gene
    missing: 2018
    name: ncbi_gene_nodes
    namespaces:
    - NCBIGene
    taxon:
    - NCBITaxon:9615
    - NCBITaxon:9823
    - NCBITaxon:9913
    total_number: 32571
  predicates:
  - missing_object_namespaces: []
    missing_objects: 0
    missing_subject_namespaces: []
    missing_subjects: 0
    total_number: 874084
    uri: biolink:orthologous_to
  total_number: 874084
- categories:
  - null
  missing: 0
  name: phenio_edges
  namespaces:
  - CHEBI
  - EMAPA
  - FBbt
  - GO
  - HP
  - MONDO
  - MP
  - MPATH
  - UBERON
  - WBPhenotype
  - WBbt
  - XPO
  - ZFA
  - ZP
  node_types:
  - categories:
    - biolink:AnatomicalEntity
    - biolink:BiologicalProcess
    - biolink:Cell
    - biolink:CellularComponent
    - biolink:ChemicalEntity
    - biolink:ChemicalSubstance
    - biolink:ClinicalModifier
    - biolink:Disease
    - biolink:GeneticInheritance
    - biolink:GrossAnatomicalStructure
    - biolink:MacromolecularComplexMixin
    - biolink:MolecularEntity
    - biolink:NamedThing
    - biolink:Occurrent
    - biolink:Onset
    - biolink:PathologicalEntityMixin
    - biolink:Pathway
    - biolink:PhenotypicFeature
    - biolink:PhenotypicQuality
    - biolink:Protein
    - biolink:RNAProduct
    - biolink:SmallMolecule
    - biolink:biological_role_mixin
    - biolink:chemical_role_mixin
    - biolink:is_metabolite_of
    missing: 118008
    name: phenio_nodes
    namespaces:
    - CHEBI
    - EMAPA
    - FBbt
    - GO
    - HP
    - MONDO
    - MP
    - MPATH
    - UBERON
    - WBPhenotype
    - WBbt
    - XPO
    - ZFA
    - ZP
    taxon:
    - missing taxon
    total_number: 211696
  predicates:
  - missing_object_namespaces: []
    missing_objects: 0
    missing_subject_namespaces: []
    missing_subjects: 0
    total_number: 144353
    uri: biolink:related_to
  - missing_object_namespaces: []
    missing_objects: 0
    missing_subject_namespaces: []
    missing_subjects: 0
    total_number: 351115
    uri: biolink:subclass_of
  total_number: 495468
- categories:
  - biolink:ChemicalToPathwayAssociation
  missing: 0
  name: reactome_chemical_to_pathway_edges
  namespaces:
  - CHEBI
  - REACT
  node_types:
  - categories:
    - biolink:ChemicalEntity
    - biolink:ChemicalSubstance
    - biolink:MolecularEntity
    - biolink:PhenotypicQuality
    - biolink:Protein
    - biolink:RNAProduct
    - biolink:SmallMolecule
    - biolink:biological_role_mixin
    - biolink:chemical_role_mixin
    missing: 389
    name: phenio_nodes
    namespaces:
    - CHEBI
    taxon:
    - missing taxon
    total_number: 389
  - categories:
    - biolink:Pathway
    missing: 12639
    name: reactome_pathway_nodes
    namespaces:
    - REACT
    taxon:
    - NCBITaxon:10090
    - NCBITaxon:10116
    - NCBITaxon:44689
    - NCBITaxon:4896
    - NCBITaxon:4932
    - NCBITaxon:6239
    - NCBITaxon:7227
    - NCBITaxon:7955
    - NCBITaxon:8364
    - NCBITaxon:9031
    - NCBITaxon:9606
    - NCBITaxon:9615
    - NCBITaxon:9823
    - NCBITaxon:9913
    total_number: 12639
  predicates:
  - missing_object_namespaces: []
    missing_objects: 0
    missing_subject_namespaces: []
    missing_subjects: 0
    total_number: 54863
    uri: biolink:participates_in
  total_number: 54863
- categories:
  - biolink:GeneToPathwayAssociation
  missing: 0
  name: reactome_gene_to_pathway_edges
  namespaces:
  - HGNC
  - NCBIGene
  - REACT
  node_types:
  - categories:
    - biolink:Gene
    missing: 10946
    name: hgnc_gene_nodes
    namespaces:
    - HGNC
    taxon:
    - NCBITaxon:9606
    - missing taxon
    total_number: 10946
  - categories:
    - biolink:Gene
    missing: 145
    name: ncbi_gene_nodes
    namespaces:
    - NCBIGene
    taxon:
    - NCBITaxon:9031
    - NCBITaxon:9615
    - NCBITaxon:9823
    - NCBITaxon:9913
    total_number: 145
  - categories:
    - biolink:Pathway
    missing: 2353
    name: reactome_pathway_nodes
    namespaces:
    - REACT
    taxon:
    - NCBITaxon:9031
    - NCBITaxon:9606
    - NCBITaxon:9615
    - NCBITaxon:9823
    - NCBITaxon:9913
    total_number: 2353
  predicates:
  - missing_object_namespaces: []
    missing_objects: 0
    missing_subject_namespaces: []
    missing_subjects: 0
    total_number: 49113
    uri: biolink:participates_in
  total_number: 49113
- categories:
  - biolink:PairwiseGeneToGeneInteraction
  missing: 0
  name: string_protein_links_edges
  namespaces:
  - HGNC
  - NCBIGene
  node_types:
  - categories:
    - biolink:Gene
    missing: 0
    name: hgnc_gene_nodes
    namespaces:
    - HGNC
    taxon:
    - NCBITaxon:9606
    - missing taxon
    total_number: 16338
  - categories:
    - biolink:Gene
    missing: 0
    name: ncbi_gene_nodes
    namespaces:
    - NCBIGene
    taxon:
    - NCBITaxon:227321
    - NCBITaxon:9031
    - NCBITaxon:9913
    total_number: 2252
  predicates:
  - missing_object_namespaces: []
    missing_objects: 0
    missing_subject_namespaces: []
    missing_subjects: 0
    total_number: 502120
    uri: biolink:interacts_with
  total_number: 502120
- categories:
  - biolink:GeneToPhenotypicFeatureAssociation
  missing: 0
  name: xenbase_gene_to_phenotype_edges
  namespaces:
  - XPO
  - Xenbase
  node_types:
  - categories:
    - biolink:Gene
    missing: 517
    name: alliance_gene_nodes
    namespaces:
    - Xenbase
    taxon:
    - NCBITaxon:8355
    - NCBITaxon:8364
    total_number: 517
  - categories:
    - biolink:PhenotypicQuality
    missing: 481
    name: phenio_nodes
    namespaces:
    - XPO
    taxon:
    - missing taxon
    total_number: 481
  predicates:
  - missing_object_namespaces: []
    missing_objects: 0
    missing_subject_namespaces: []
    missing_subjects: 0
    total_number: 2317
    uri: biolink:has_phenotype
  total_number: 2317
- categories:
  - biolink:GeneToPhenotypicFeatureAssociation
  missing: 0
  name: zfin_gene_to_phenotype_edges
  namespaces:
  - ZFIN
  - ZP
  node_types:
  - categories:
    - biolink:Gene
    missing: 7317
    name: alliance_gene_nodes
    namespaces:
    - ZFIN
    taxon:
    - NCBITaxon:7955
    total_number: 7317
  - categories:
    - biolink:PhenotypicQuality
    missing: 23542
    name: phenio_nodes
    namespaces:
    - ZP
    taxon:
    - missing taxon
    total_number: 23542
  predicates:
  - missing_object_namespaces: []
    missing_objects: 0
    missing_subject_namespaces: []
    missing_subjects: 0
    total_number: 140376
    uri: biolink:has_phenotype
  total_number: 140376
nodes:
- categories:
  - biolink:Gene
  name: alliance_gene_nodes
  namespaces:
  - FB
  - MGI
  - RGD
  - SGD
  - WB
  - Xenbase
  - ZFIN
  taxon:
  - NCBITaxon:10090
  - NCBITaxon:10116
  - NCBITaxon:559292
  - NCBITaxon:6239
  - NCBITaxon:7227
  - NCBITaxon:7955
  - NCBITaxon:8355
  - NCBITaxon:8364
  - missing taxon
  total_number: 309111
- categories:
  - biolink:Gene
  name: dictybase_gene_nodes
  namespaces:
  - dictyBase
  taxon:
  - NCBITaxon:44689
  total_number: 14222
- categories:
  - biolink:Gene
  name: hgnc_gene_nodes
  namespaces:
  - HGNC
  taxon:
  - NCBITaxon:9606
  - missing taxon
  total_number: 43666
- categories:
  - biolink:Gene
  name: ncbi_gene_nodes
  namespaces:
  - NCBIGene
  taxon:
  - NCBITaxon:227321
  - NCBITaxon:9031
  - NCBITaxon:9615
  - NCBITaxon:9823
  - NCBITaxon:9913
  total_number: 194715
- categories:
  - biolink:AnatomicalEntity
  - biolink:BiologicalProcess
  - biolink:Cell
  - biolink:CellularComponent
  - biolink:ChemicalEntity
  - biolink:ChemicalSubstance
  - biolink:ClinicalModifier
  - biolink:Disease
  - biolink:GeneticInheritance
  - biolink:GrossAnatomicalStructure
  - biolink:MacromolecularComplexMixin
  - biolink:MolecularActivity
  - biolink:MolecularEntity
  - biolink:NamedThing
  - biolink:Occurrent
  - biolink:Onset
  - biolink:PathologicalEntityMixin
  - biolink:Pathway
  - biolink:PhenotypicFeature
  - biolink:PhenotypicQuality
  - biolink:Protein
  - biolink:RNAProduct
  - biolink:SmallMolecule
  - biolink:affects
  - biolink:affects_localization_of
  - biolink:biological_role_mixin
  - biolink:causes
  - biolink:chemical_role_mixin
  - biolink:close_match
  - biolink:coexists_with
  - biolink:contributes_to
  - biolink:derives_from
  - biolink:disease_has_basis_in
  - biolink:disease_has_location
  - biolink:has_attribute
  - biolink:has_part
  - biolink:increases_degradation_of
  - biolink:is_metabolite_of
  - biolink:located_in
  - biolink:manifestation_of
  - biolink:part_of
  - biolink:related_to
  - biolink:same_as
  - biolink:subclass_of
  - biolink:superclass_of
  - biolink:treated_by
  name: phenio_nodes
  namespaces:
  - CHEBI
  - EMAPA
  - FBbt
  - FYPO
  - GO
  - GOREL
  - HP
  - MESH
  - MONDO
  - MP
  - MPATH
  - OMIM
  - UBERON
  - WBPhenotype
  - WBbt
  - XPO
  - ZFA
  - ZP
  taxon:
  - missing taxon
  total_number: 227732
- categories:
  - biolink:Gene
  name: pombase_gene_nodes
  namespaces:
  - PomBase
  taxon:
  - NCBITaxon:4896
  total_number: 5134
- categories:
  - biolink:Pathway
  name: reactome_pathway_nodes
  namespaces:
  - REACT
  taxon:
  - NCBITaxon:10090
  - NCBITaxon:10116
  - NCBITaxon:44689
  - NCBITaxon:4896
  - NCBITaxon:4932
  - NCBITaxon:6239
  - NCBITaxon:7227
  - NCBITaxon:7955
  - NCBITaxon:8364
  - NCBITaxon:9031
  - NCBITaxon:9606
  - NCBITaxon:9615
  - NCBITaxon:9823
  - NCBITaxon:9913
  total_number: 21448
