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MP missing_objects: 31 missing_subject_namespaces: [] missing_subjects: 0 total_number: 114 uri: biolink:has_phenotype total_number: 114 - categories: - biolink:GeneToExpressionSiteAssociation missing: 40101 name: bgee_gene_to_expression_edges namespaces: - CL - ENSEMBL - NCBIGene - UBERON node_types: - categories: - biolink:Gene missing: 15434 name: ncbi_gene_nodes namespaces: - NCBIGene taxon: - NCBITaxon:9823 - NCBITaxon:9913 total_number: 15434 - categories: - biolink:AnatomicalEntity - biolink:GrossAnatomicalStructure missing: 157 name: phenio_nodes namespaces: - UBERON taxon: - missing taxon total_number: 157 predicates: - missing_object_namespaces: - CL missing_objects: 11 missing_subject_namespaces: - ENSEMBL missing_subjects: 40090 total_number: 266654 uri: biolink:expressed_in total_number: 266654 - categories: - biolink:ChemicalToDiseaseOrPhenotypicFeatureAssociation missing: 7680 name: ctd_chemical_to_disease_edges namespaces: - MESH - MONDO node_types: - categories: - biolink:Disease missing: 1690 name: phenio_nodes namespaces: - MONDO taxon: - missing taxon total_number: 1690 predicates: - missing_object_namespaces: - MESH missing_objects: 794 missing_subject_namespaces: - MESH missing_subjects: 6886 total_number: 37655 uri: biolink:treats total_number: 37655 - categories: - biolink:GeneToPhenotypicFeatureAssociation missing: 170 name: dictybase_gene_to_phenotype_edges namespaces: - DDPHENO - dictyBase node_types: - categories: - biolink:Gene missing: 507 name: dictybase_gene_nodes namespaces: - dictyBase taxon: - NCBITaxon:44689 total_number: 507 predicates: - missing_object_namespaces: - DDPHENO missing_objects: 170 missing_subject_namespaces: [] missing_subjects: 0 total_number: 1216 uri: biolink:has_phenotype total_number: 1216 - categories: - biolink:MacromolecularMachineToBiologicalProcessAssociation - biolink:MacromolecularMachineToCellularComponentAssociation - biolink:MacromolecularMachineToMolecularActivityAssociation missing: 98606 name: goa_go_annotation_edges namespaces: - AspGD - FB - GO - HGNC - MGI - PR - PomBase - RGD - RefSeq - SGD - UniProtKB - WB - ZFIN - dictyBase node_types: - categories: - biolink:Gene missing: 37 name: alliance_gene_nodes namespaces: - MGI - RGD taxon: - NCBITaxon:10090 - NCBITaxon:10116 total_number: 37 - categories: - biolink:Gene missing: 24 name: dictybase_gene_nodes namespaces: - dictyBase taxon: - NCBITaxon:44689 total_number: 24 - categories: - biolink:Gene missing: 10 name: hgnc_gene_nodes namespaces: - HGNC taxon: - NCBITaxon:9606 total_number: 10 - categories: - biolink:BiologicalProcess - biolink:CellularComponent - biolink:MacromolecularComplexMixin - biolink:MolecularActivity - biolink:NamedThing - biolink:Occurrent - biolink:Pathway missing: 18098 name: phenio_nodes namespaces: - GO taxon: - missing taxon total_number: 18098 - categories: - biolink:Gene missing: 4 name: pombase_gene_nodes namespaces: - PomBase taxon: - NCBITaxon:4896 total_number: 4 predicates: - missing_object_namespaces: [] missing_objects: 0 missing_subject_namespaces: - AspGD - FB - MGI - PR - PomBase - RGD - SGD - UniProtKB - ZFIN missing_subjects: 17629 total_number: 22552 uri: biolink:active_in - missing_object_namespaces: - GO missing_objects: 4 missing_subject_namespaces: - AspGD - FB - MGI - PR - PomBase - RGD - SGD - UniProtKB - ZFIN missing_subjects: 72159 total_number: 269375 uri: biolink:actively_involved_in - missing_object_namespaces: [] missing_objects: 0 missing_subject_namespaces: - MGI - PR - UniProtKB missing_subjects: 45 total_number: 64 uri: biolink:acts_upstream_of - missing_object_namespaces: [] missing_objects: 0 missing_subject_namespaces: - UniProtKB missing_subjects: 4 total_number: 8 uri: biolink:acts_upstream_of_negative_effect - missing_object_namespaces: - GO missing_objects: 1 missing_subject_namespaces: - AspGD - MGI - PR - RGD - SGD - UniProtKB - WB missing_subjects: 2033 total_number: 4198 uri: biolink:acts_upstream_of_or_within - missing_object_namespaces: [] missing_objects: 0 missing_subject_namespaces: - PR missing_subjects: 1 total_number: 2 uri: biolink:acts_upstream_of_or_within_negative_effect - missing_object_namespaces: [] missing_objects: 0 missing_subject_namespaces: - PR - UniProtKB missing_subjects: 6 total_number: 8 uri: biolink:acts_upstream_of_or_within_positive_effect - missing_object_namespaces: [] missing_objects: 0 missing_subject_namespaces: - UniProtKB missing_subjects: 12 total_number: 17 uri: biolink:acts_upstream_of_positive_effect - missing_object_namespaces: [] missing_objects: 0 missing_subject_namespaces: - AspGD - RGD - UniProtKB missing_subjects: 231 total_number: 292 uri: biolink:colocalizes_with - missing_object_namespaces: [] missing_objects: 0 missing_subject_namespaces: - AspGD - PR - PomBase - RGD - UniProtKB - ZFIN missing_subjects: 485 total_number: 603 uri: biolink:contributes_to - missing_object_namespaces: - GO missing_objects: 7 missing_subject_namespaces: - AspGD - FB - MGI - PR - PomBase - RGD - RefSeq - SGD - UniProtKB - WB - ZFIN missing_subjects: 69970 total_number: 141640 uri: biolink:enables - missing_object_namespaces: [] missing_objects: 0 missing_subject_namespaces: - AspGD - FB - MGI - PR - RGD - SGD - UniProtKB missing_subjects: 55815 total_number: 112452 uri: biolink:located_in - missing_object_namespaces: [] missing_objects: 0 missing_subject_namespaces: - AspGD - FB - MGI - PR - PomBase - RGD - SGD - UniProtKB - ZFIN missing_subjects: 15750 total_number: 19789 uri: biolink:part_of total_number: 571000 - categories: - biolink:DiseaseOrPhenotypicFeatureToGeneticInheritanceAssociation missing: 201 name: hpoa_disease_mode_of_inheritance_edges namespaces: - DECIPHER - HP - OMIM node_types: - categories: - biolink:GeneticInheritance missing: 7 name: phenio_nodes namespaces: - HP taxon: - missing taxon total_number: 7 predicates: - missing_object_namespaces: [] missing_objects: 0 missing_subject_namespaces: - DECIPHER - OMIM missing_subjects: 201 total_number: 207 uri: biolink:has_mode_of_inheritance total_number: 207 - categories: - biolink:DiseaseToPhenotypicFeatureAssociation missing: 4596 name: hpoa_disease_phenotype_edges namespaces: - DECIPHER - HP - MONDO - OMIM - ORPHA node_types: - categories: - biolink:Disease - biolink:PhenotypicQuality missing: 8450 name: phenio_nodes namespaces: - HP - MONDO taxon: - missing taxon total_number: 8450 predicates: - missing_object_namespaces: - HP missing_objects: 85 missing_subject_namespaces: - DECIPHER - OMIM - ORPHA missing_subjects: 4511 total_number: 118404 uri: biolink:has_phenotype total_number: 118404 - categories: - biolink:GeneToPhenotypicFeatureAssociation missing: 87 name: hpoa_gene_to_phenotype_edges namespaces: - HGNC - HP - NCBIGene node_types: - categories: - biolink:Gene missing: 104 name: hgnc_gene_nodes namespaces: - HGNC taxon: - NCBITaxon:9606 total_number: 104 - categories: - biolink:GeneticInheritance - biolink:Onset - biolink:PhenotypicQuality missing: 152 name: phenio_nodes namespaces: - HP taxon: - missing taxon total_number: 152 predicates: - missing_object_namespaces: - HP missing_objects: 83 missing_subject_namespaces: - NCBIGene missing_subjects: 4 total_number: 281 uri: biolink:has_phenotype total_number: 281 - categories: - biolink:GeneToDiseaseAssociation missing: 1183 name: omim_gene_to_disease_edges namespaces: - HGNC - MONDO - NCBIGene - OMIM node_types: - categories: - biolink:Gene missing: 248 name: hgnc_gene_nodes namespaces: - HGNC taxon: - NCBITaxon:9606 total_number: 248 - categories: - biolink:Disease missing: 805 name: phenio_nodes namespaces: - MONDO taxon: - missing taxon total_number: 805 predicates: - missing_object_namespaces: - OMIM missing_objects: 71 missing_subject_namespaces: - NCBIGene - OMIM missing_subjects: 347 total_number: 371 uri: biolink:affects_risk_for - missing_object_namespaces: - OMIM missing_objects: 246 missing_subject_namespaces: - NCBIGene - OMIM missing_subjects: 522 total_number: 760 uri: biolink:gene_associated_with_condition total_number: 1131 - categories: - biolink:GeneToGeneHomologyAssociation missing: 59957 name: panther_genome_orthologs_edges namespaces: - ENSEMBL - FB - HGNC - MGI - NCBIGene - POMBASE - RGD - SGD - UniProtKB - WB - Xenbase - ZFIN - dictyBase node_types: - categories: - biolink:Gene missing: 68509 name: alliance_gene_nodes namespaces: - FB - MGI - RGD - SGD - WB - Xenbase - ZFIN taxon: - NCBITaxon:10090 - NCBITaxon:10116 - NCBITaxon:559292 - NCBITaxon:6239 - NCBITaxon:7227 - NCBITaxon:7955 - NCBITaxon:8364 - missing taxon total_number: 91296 - categories: - biolink:Gene missing: 5877 name: dictybase_gene_nodes namespaces: - dictyBase taxon: - NCBITaxon:44689 total_number: 5877 - categories: - biolink:Gene missing: 18913 name: hgnc_gene_nodes namespaces: - HGNC taxon: - NCBITaxon:9606 - missing taxon total_number: 18913 - categories: - biolink:Gene missing: 30638 name: ncbi_gene_nodes namespaces: - NCBIGene taxon: - NCBITaxon:9615 - NCBITaxon:9823 - NCBITaxon:9913 total_number: 32316 predicates: - missing_object_namespaces: - ENSEMBL - FB - MGI - NCBIGene - POMBASE - RGD - UniProtKB - WB - Xenbase - ZFIN missing_objects: 57027 missing_subject_namespaces: - ENSEMBL - FB - HGNC - MGI - NCBIGene - POMBASE - RGD - UniProtKB - WB - Xenbase - ZFIN missing_subjects: 55084 total_number: 999914 uri: biolink:orthologous_to total_number: 999914 - categories: - biolink:GeneToPhenotypicFeatureAssociation missing: 6189 name: pombase_gene_to_phenotype_edges namespaces: - FYPO - PomBase node_types: - categories: - biolink:Gene missing: 4968 name: pombase_gene_nodes namespaces: - PomBase taxon: - NCBITaxon:4896 total_number: 4968 predicates: - missing_object_namespaces: - FYPO missing_objects: 6020 missing_subject_namespaces: - PomBase missing_subjects: 169 total_number: 92757 uri: biolink:has_phenotype total_number: 92757 - categories: - biolink:ChemicalToPathwayAssociation missing: 2005 name: reactome_chemical_to_pathway_edges namespaces: - CHEBI - REACT node_types: - categories: - biolink:Pathway missing: 8589 name: reactome_pathway_nodes namespaces: - REACT taxon: - NCBITaxon:10090 - NCBITaxon:10116 - NCBITaxon:44689 - NCBITaxon:4896 - NCBITaxon:4932 - NCBITaxon:6239 - NCBITaxon:7227 - NCBITaxon:7955 - NCBITaxon:8364 - NCBITaxon:9031 - NCBITaxon:9606 - NCBITaxon:9615 - NCBITaxon:9823 - NCBITaxon:9913 total_number: 8589 predicates: - missing_object_namespaces: [] missing_objects: 0 missing_subject_namespaces: - CHEBI missing_subjects: 2005 total_number: 43155 uri: biolink:participates_in total_number: 43155 - categories: - biolink:GeneToPathwayAssociation missing: 54229 name: reactome_gene_to_pathway_edges namespaces: - NCBIGene - REACT - UniProtKB node_types: - categories: - biolink:Pathway missing: 13364 name: reactome_pathway_nodes namespaces: - REACT taxon: - NCBITaxon:10090 - NCBITaxon:10116 - NCBITaxon:44689 - NCBITaxon:4896 - NCBITaxon:4932 - NCBITaxon:6239 - NCBITaxon:7227 - NCBITaxon:7955 - NCBITaxon:8364 - NCBITaxon:9031 - NCBITaxon:9606 - NCBITaxon:9615 - NCBITaxon:9823 - NCBITaxon:9913 total_number: 13364 predicates: - missing_object_namespaces: [] missing_objects: 0 missing_subject_namespaces: - NCBIGene - UniProtKB missing_subjects: 54229 total_number: 185911 uri: biolink:participates_in total_number: 185911 - categories: - biolink:PairwiseGeneToGeneInteraction missing: 102381 name: string_protein_links_edges namespaces: - HGNC - NCBIGene - UniProtKB node_types: - categories: - biolink:Gene missing: 0 name: hgnc_gene_nodes namespaces: - HGNC taxon: - NCBITaxon:9606 total_number: 865 - categories: - biolink:Gene missing: 0 name: ncbi_gene_nodes namespaces: - NCBIGene taxon: - NCBITaxon:227321 - NCBITaxon:9031 - NCBITaxon:9913 total_number: 2963 predicates: - missing_object_namespaces: - NCBIGene - UniProtKB missing_objects: 102381 missing_subject_namespaces: - NCBIGene - UniProtKB missing_subjects: 102381 total_number: 2630948 uri: biolink:interacts_with total_number: 2630948 - categories: - biolink:GeneToPhenotypicFeatureAssociation missing: 63 name: xenbase_gene_to_phenotype_edges namespaces: - XPO - Xenbase node_types: - categories: - biolink:Gene missing: 4 name: alliance_gene_nodes namespaces: - Xenbase taxon: - NCBITaxon:8355 - NCBITaxon:8364 total_number: 4 - categories: - biolink:PhenotypicQuality missing: 146 name: phenio_nodes namespaces: - XPO taxon: - missing taxon total_number: 146 predicates: - missing_object_namespaces: - XPO missing_objects: 2 missing_subject_namespaces: - Xenbase missing_subjects: 61 total_number: 275 uri: biolink:has_phenotype total_number: 275 - categories: - biolink:GeneToGeneHomologyAssociation missing: 15303 name: xenbase_non_entrez_orthologs_edges namespaces: - HGNC - MGI - OMIM - Xenbase - ZFIN node_types: - categories: - biolink:Gene missing: 26557 name: alliance_gene_nodes namespaces: - MGI - ZFIN taxon: - NCBITaxon:10090 - NCBITaxon:7955 - missing taxon total_number: 26557 - categories: - biolink:Gene missing: 12399 name: hgnc_gene_nodes namespaces: - HGNC taxon: - NCBITaxon:9606 total_number: 12399 predicates: - missing_object_namespaces: - MGI - OMIM - ZFIN missing_objects: 348 missing_subject_namespaces: - Xenbase missing_subjects: 14955 total_number: 44287 uri: biolink:orthologous_to total_number: 44287 - categories: - biolink:GeneToGeneHomologyAssociation missing: 44287 name: xenbase_orthologs_edges namespaces: - HGNC - NCBIGene - Xenbase node_types: - categories: - biolink:Gene missing: 14918 name: hgnc_gene_nodes namespaces: - HGNC taxon: - NCBITaxon:9606 - missing taxon total_number: 14918 predicates: - missing_object_namespaces: - NCBIGene missing_objects: 28688 missing_subject_namespaces: - Xenbase missing_subjects: 15599 total_number: 45104 uri: biolink:orthologous_to total_number: 45104 - categories: - biolink:GeneToPhenotypicFeatureAssociation missing: 1619 name: zfin_gene_to_phenotype_edges namespaces: - ZFIN - ZP node_types: - categories: - biolink:Gene missing: 443 name: alliance_gene_nodes namespaces: - ZFIN taxon: - NCBITaxon:7955 total_number: 443 predicates: - missing_object_namespaces: - ZP missing_objects: 1619 missing_subject_namespaces: [] missing_subjects: 0 total_number: 2867 uri: biolink:has_phenotype total_number: 2867 edges: - categories: - biolink:GeneToExpressionSiteAssociation missing: 0 name: alliance_gene_to_expression_edges namespaces: - EMAPA - FB - FBbt - GO - MGI - RGD - SGD - WB - WBbt - ZFA - ZFIN node_types: - categories: - biolink:Gene missing: 54151 name: alliance_gene_nodes namespaces: - FB - MGI - RGD - SGD - WB - ZFIN taxon: - NCBITaxon:10090 - NCBITaxon:10116 - NCBITaxon:559292 - NCBITaxon:6239 - NCBITaxon:7227 - NCBITaxon:7955 - missing taxon total_number: 54151 - categories: - biolink:AnatomicalEntity - biolink:Cell - biolink:CellularComponent - biolink:GrossAnatomicalStructure - biolink:MacromolecularComplexMixin - biolink:NamedThing missing: 13368 name: phenio_nodes namespaces: - EMAPA - FBbt - GO - WBbt - ZFA taxon: - missing taxon total_number: 13368 predicates: - missing_object_namespaces: [] missing_objects: 0 missing_subject_namespaces: [] missing_subjects: 0 total_number: 1790844 uri: biolink:expressed_in total_number: 1790844 - categories: - biolink:GeneToPhenotypicFeatureAssociation missing: 0 name: alliance_gene_to_phenotype_edges namespaces: - MGI - MP - RGD - WB - WBPhenotype node_types: - categories: - biolink:Gene missing: 19669 name: alliance_gene_nodes namespaces: - MGI - RGD - WB taxon: - NCBITaxon:10090 - NCBITaxon:10116 - NCBITaxon:6239 - missing taxon total_number: 19669 - categories: - biolink:PhenotypicQuality missing: 12258 name: phenio_nodes namespaces: - MP - WBPhenotype taxon: - missing taxon total_number: 12258 predicates: - missing_object_namespaces: [] missing_objects: 0 missing_subject_namespaces: [] missing_subjects: 0 total_number: 298084 uri: biolink:has_phenotype total_number: 298084 - categories: - biolink:GeneToExpressionSiteAssociation missing: 0 name: bgee_gene_to_expression_edges namespaces: - NCBIGene - UBERON node_types: - categories: - biolink:Gene missing: 31877 name: ncbi_gene_nodes namespaces: - NCBIGene taxon: - NCBITaxon:9823 - NCBITaxon:9913 total_number: 31877 - categories: - biolink:AnatomicalEntity - biolink:GrossAnatomicalStructure missing: 139 name: phenio_nodes namespaces: - UBERON taxon: - missing taxon total_number: 139 predicates: - missing_object_namespaces: [] missing_objects: 0 missing_subject_namespaces: [] missing_subjects: 0 total_number: 236565 uri: biolink:expressed_in total_number: 236565 - categories: - biolink:MacromolecularMachineToBiologicalProcessAssociation - biolink:MacromolecularMachineToCellularComponentAssociation - biolink:MacromolecularMachineToMolecularActivityAssociation missing: 0 name: goa_go_annotation_edges namespaces: - FB - GO - HGNC - MGI - PomBase - RGD - SGD - WB - ZFIN - dictyBase node_types: - categories: - biolink:Gene missing: 111537 name: alliance_gene_nodes namespaces: - FB - MGI - RGD - SGD - WB - ZFIN taxon: - NCBITaxon:10090 - NCBITaxon:10116 - NCBITaxon:559292 - NCBITaxon:6239 - NCBITaxon:7227 - NCBITaxon:7955 - missing taxon total_number: 111537 - categories: - biolink:Gene missing: 9490 name: dictybase_gene_nodes namespaces: - dictyBase taxon: - NCBITaxon:44689 total_number: 9490 - categories: - biolink:Gene missing: 19585 name: hgnc_gene_nodes namespaces: - HGNC taxon: - NCBITaxon:9606 - missing taxon total_number: 19585 - categories: - biolink:CellularComponent - biolink:MacromolecularComplexMixin - biolink:Occurrent - biolink:Pathway missing: 24298 name: phenio_nodes namespaces: - GO taxon: - missing taxon total_number: 24298 - categories: - biolink:Gene missing: 5070 name: pombase_gene_nodes namespaces: - PomBase taxon: - NCBITaxon:4896 total_number: 5070 predicates: - missing_object_namespaces: [] missing_objects: 0 missing_subject_namespaces: [] missing_subjects: 0 total_number: 135612 uri: biolink:active_in - missing_object_namespaces: [] missing_objects: 0 missing_subject_namespaces: [] missing_subjects: 0 total_number: 678730 uri: biolink:actively_involved_in - missing_object_namespaces: [] missing_objects: 0 missing_subject_namespaces: [] missing_subjects: 0 total_number: 9280 uri: biolink:acts_upstream_of - missing_object_namespaces: [] missing_objects: 0 missing_subject_namespaces: [] missing_subjects: 0 total_number: 164 uri: biolink:acts_upstream_of_negative_effect - missing_object_namespaces: [] missing_objects: 0 missing_subject_namespaces: [] missing_subjects: 0 total_number: 200625 uri: biolink:acts_upstream_of_or_within - missing_object_namespaces: [] missing_objects: 0 missing_subject_namespaces: [] missing_subjects: 0 total_number: 182 uri: biolink:acts_upstream_of_or_within_negative_effect - missing_object_namespaces: [] missing_objects: 0 missing_subject_namespaces: [] missing_subjects: 0 total_number: 452 uri: biolink:acts_upstream_of_or_within_positive_effect - missing_object_namespaces: [] missing_objects: 0 missing_subject_namespaces: [] missing_subjects: 0 total_number: 297 uri: biolink:acts_upstream_of_positive_effect - missing_object_namespaces: [] missing_objects: 0 missing_subject_namespaces: [] missing_subjects: 0 total_number: 4218 uri: biolink:colocalizes_with - missing_object_namespaces: [] missing_objects: 0 missing_subject_namespaces: [] missing_subjects: 0 total_number: 6834 uri: biolink:contributes_to - missing_object_namespaces: [] missing_objects: 0 missing_subject_namespaces: [] missing_subjects: 0 total_number: 785128 uri: biolink:enables - missing_object_namespaces: [] missing_objects: 0 missing_subject_namespaces: [] missing_subjects: 0 total_number: 473285 uri: biolink:located_in - missing_object_namespaces: [] missing_objects: 0 missing_subject_namespaces: [] missing_subjects: 0 total_number: 78316 uri: biolink:part_of total_number: 2373123 - categories: - biolink:DiseaseOrPhenotypicFeatureToGeneticInheritanceAssociation missing: 0 name: hpoa_disease_mode_of_inheritance_edges namespaces: - HGNC - HP - MONDO node_types: - categories: - biolink:Gene missing: 7 name: hgnc_gene_nodes namespaces: - HGNC taxon: - NCBITaxon:9606 total_number: 7 - categories: - biolink:Disease - biolink:GeneticInheritance missing: 7974 name: phenio_nodes namespaces: - HP - MONDO taxon: - missing taxon total_number: 7974 predicates: - missing_object_namespaces: [] missing_objects: 0 missing_subject_namespaces: [] missing_subjects: 0 total_number: 8431 uri: biolink:has_mode_of_inheritance total_number: 8431 - categories: - biolink:DiseaseToPhenotypicFeatureAssociation missing: 0 name: hpoa_disease_phenotype_edges namespaces: - HGNC - HP - MONDO node_types: - categories: - biolink:Gene missing: 8 name: hgnc_gene_nodes namespaces: - HGNC taxon: - NCBITaxon:9606 total_number: 8 - categories: - biolink:Disease - biolink:PhenotypicQuality missing: 16400 name: phenio_nodes namespaces: - HP - MONDO taxon: - missing taxon total_number: 16400 predicates: - missing_object_namespaces: [] missing_objects: 0 missing_subject_namespaces: [] missing_subjects: 0 total_number: 120068 uri: biolink:has_phenotype total_number: 120068 - categories: - biolink:GeneToPhenotypicFeatureAssociation missing: 0 name: hpoa_gene_to_phenotype_edges namespaces: - HGNC - HP node_types: - categories: - biolink:Gene missing: 4891 name: hgnc_gene_nodes namespaces: - HGNC taxon: - NCBITaxon:9606 total_number: 4891 - categories: - biolink:ClinicalModifier - biolink:GeneticInheritance - biolink:Onset - biolink:PhenotypicFeature - biolink:PhenotypicQuality missing: 9250 name: phenio_nodes namespaces: - HP taxon: - missing taxon total_number: 9250 predicates: - missing_object_namespaces: [] missing_objects: 0 missing_subject_namespaces: [] missing_subjects: 0 total_number: 268702 uri: biolink:has_phenotype total_number: 268702 - categories: - biolink:GeneToDiseaseAssociation missing: 0 name: omim_gene_to_disease_edges namespaces: - HGNC - MONDO node_types: - categories: - biolink:Gene missing: 4079 name: hgnc_gene_nodes namespaces: - HGNC taxon: - NCBITaxon:9606 total_number: 4175 - categories: - biolink:Disease missing: 5451 name: phenio_nodes namespaces: - MONDO taxon: - missing taxon total_number: 5456 predicates: - missing_object_namespaces: [] missing_objects: 0 missing_subject_namespaces: [] missing_subjects: 0 total_number: 702 uri: biolink:affects_risk_for - missing_object_namespaces: [] missing_objects: 0 missing_subject_namespaces: [] missing_subjects: 0 total_number: 5674 uri: biolink:gene_associated_with_condition total_number: 6376 - categories: - biolink:GeneToGeneHomologyAssociation missing: 0 name: panther_genome_orthologs_edges namespaces: - FB - HGNC - MGI - NCBIGene - RGD - SGD - WB - Xenbase - ZFIN - dictyBase node_types: - categories: - biolink:Gene missing: 15186 name: alliance_gene_nodes namespaces: - FB - MGI - RGD - SGD - WB - Xenbase - ZFIN taxon: - NCBITaxon:10090 - NCBITaxon:10116 - NCBITaxon:559292 - NCBITaxon:6239 - NCBITaxon:7227 - NCBITaxon:7955 - NCBITaxon:8364 - missing taxon total_number: 92553 - categories: - biolink:Gene missing: 5756 name: dictybase_gene_nodes namespaces: - dictyBase taxon: - NCBITaxon:44689 total_number: 5756 - categories: - biolink:Gene missing: 19081 name: hgnc_gene_nodes namespaces: - HGNC taxon: - NCBITaxon:9606 - missing taxon total_number: 19081 - categories: - biolink:Gene missing: 2018 name: ncbi_gene_nodes namespaces: - NCBIGene taxon: - NCBITaxon:9615 - NCBITaxon:9823 - NCBITaxon:9913 total_number: 32571 predicates: - missing_object_namespaces: [] missing_objects: 0 missing_subject_namespaces: [] missing_subjects: 0 total_number: 873929 uri: biolink:orthologous_to total_number: 873929 - categories: - null missing: 0 name: phenio_edges namespaces: - CHEBI - EMAPA - FBbt - GO - HP - MONDO - MP - MPATH - UBERON - WBPhenotype - WBbt - XPO - ZFA - ZP node_types: - categories: - biolink:AnatomicalEntity - biolink:BiologicalProcess - biolink:Cell - biolink:CellularComponent - biolink:ChemicalEntity - biolink:ChemicalSubstance - biolink:ClinicalModifier - biolink:Disease - biolink:GeneticInheritance - biolink:GrossAnatomicalStructure - biolink:MacromolecularComplexMixin - biolink:MolecularEntity - biolink:NamedThing - biolink:Occurrent - biolink:Onset - biolink:PathologicalEntityMixin - biolink:Pathway - biolink:PhenotypicFeature - biolink:PhenotypicQuality - biolink:Protein - biolink:RNAProduct - biolink:SmallMolecule - biolink:biological_role_mixin - biolink:chemical_role_mixin - biolink:is_metabolite_of missing: 118008 name: phenio_nodes namespaces: - CHEBI - EMAPA - FBbt - GO - HP - MONDO - MP - MPATH - UBERON - WBPhenotype - WBbt - XPO - ZFA - ZP taxon: - missing taxon total_number: 211696 predicates: - missing_object_namespaces: [] missing_objects: 0 missing_subject_namespaces: [] missing_subjects: 0 total_number: 144353 uri: biolink:related_to - missing_object_namespaces: [] missing_objects: 0 missing_subject_namespaces: [] missing_subjects: 0 total_number: 351115 uri: biolink:subclass_of total_number: 495468 - categories: - biolink:ChemicalToPathwayAssociation missing: 0 name: reactome_chemical_to_pathway_edges namespaces: - CHEBI - REACT node_types: - categories: - biolink:ChemicalEntity - biolink:ChemicalSubstance - biolink:MolecularEntity - biolink:PhenotypicQuality - biolink:Protein - biolink:RNAProduct - biolink:SmallMolecule - biolink:biological_role_mixin - biolink:chemical_role_mixin missing: 389 name: phenio_nodes namespaces: - CHEBI taxon: - missing taxon total_number: 389 - categories: - biolink:Pathway missing: 12639 name: reactome_pathway_nodes namespaces: - REACT taxon: - NCBITaxon:10090 - NCBITaxon:10116 - NCBITaxon:44689 - NCBITaxon:4896 - NCBITaxon:4932 - NCBITaxon:6239 - NCBITaxon:7227 - NCBITaxon:7955 - NCBITaxon:8364 - NCBITaxon:9031 - NCBITaxon:9606 - NCBITaxon:9615 - NCBITaxon:9823 - NCBITaxon:9913 total_number: 12639 predicates: - missing_object_namespaces: [] missing_objects: 0 missing_subject_namespaces: [] missing_subjects: 0 total_number: 54899 uri: biolink:participates_in total_number: 54899 - categories: - biolink:GeneToPathwayAssociation missing: 0 name: reactome_gene_to_pathway_edges namespaces: - HGNC - NCBIGene - REACT node_types: - categories: - biolink:Gene missing: 10937 name: hgnc_gene_nodes namespaces: - HGNC taxon: - NCBITaxon:9606 - missing taxon total_number: 10937 - categories: - biolink:Gene missing: 1295 name: ncbi_gene_nodes namespaces: - NCBIGene taxon: - NCBITaxon:9031 - NCBITaxon:9615 - NCBITaxon:9823 - NCBITaxon:9913 total_number: 1295 - categories: - biolink:Pathway missing: 3134 name: reactome_pathway_nodes namespaces: - REACT taxon: - NCBITaxon:9031 - NCBITaxon:9606 - NCBITaxon:9615 - NCBITaxon:9823 - NCBITaxon:9913 total_number: 3134 predicates: - missing_object_namespaces: [] missing_objects: 0 missing_subject_namespaces: [] missing_subjects: 0 total_number: 51984 uri: biolink:participates_in total_number: 51984 - categories: - biolink:PairwiseGeneToGeneInteraction missing: 0 name: string_protein_links_edges namespaces: - HGNC - NCBIGene node_types: - categories: - biolink:Gene missing: 0 name: hgnc_gene_nodes namespaces: - HGNC taxon: - NCBITaxon:9606 - missing taxon total_number: 16338 - categories: - biolink:Gene missing: 0 name: ncbi_gene_nodes namespaces: - NCBIGene taxon: - NCBITaxon:227321 - NCBITaxon:9031 - NCBITaxon:9913 total_number: 2252 predicates: - missing_object_namespaces: [] missing_objects: 0 missing_subject_namespaces: [] missing_subjects: 0 total_number: 502120 uri: biolink:interacts_with total_number: 502120 - categories: - biolink:GeneToPhenotypicFeatureAssociation missing: 0 name: xenbase_gene_to_phenotype_edges namespaces: - XPO - Xenbase node_types: - categories: - biolink:Gene missing: 517 name: alliance_gene_nodes namespaces: - Xenbase taxon: - NCBITaxon:8355 - NCBITaxon:8364 total_number: 517 - categories: - biolink:PhenotypicQuality missing: 481 name: phenio_nodes namespaces: - XPO taxon: - missing taxon total_number: 481 predicates: - missing_object_namespaces: [] missing_objects: 0 missing_subject_namespaces: [] missing_subjects: 0 total_number: 2317 uri: biolink:has_phenotype total_number: 2317 - categories: - biolink:GeneToPhenotypicFeatureAssociation missing: 0 name: zfin_gene_to_phenotype_edges namespaces: - ZFIN - ZP node_types: - categories: - biolink:Gene missing: 7298 name: alliance_gene_nodes namespaces: - ZFIN taxon: - NCBITaxon:7955 total_number: 7298 - categories: - biolink:PhenotypicQuality missing: 23540 name: phenio_nodes namespaces: - ZP taxon: - missing taxon total_number: 23540 predicates: - missing_object_namespaces: [] missing_objects: 0 missing_subject_namespaces: [] missing_subjects: 0 total_number: 139778 uri: biolink:has_phenotype total_number: 139778 nodes: - categories: - biolink:Gene name: alliance_gene_nodes namespaces: - FB - MGI - RGD - SGD - WB - Xenbase - ZFIN taxon: - NCBITaxon:10090 - NCBITaxon:10116 - NCBITaxon:559292 - NCBITaxon:6239 - NCBITaxon:7227 - NCBITaxon:7955 - NCBITaxon:8355 - NCBITaxon:8364 - missing taxon total_number: 309111 - categories: - biolink:Gene name: dictybase_gene_nodes namespaces: - dictyBase taxon: - NCBITaxon:44689 total_number: 14222 - categories: - biolink:Gene name: hgnc_gene_nodes namespaces: - HGNC taxon: - NCBITaxon:9606 - missing taxon total_number: 43621 - categories: - biolink:Gene name: ncbi_gene_nodes namespaces: - NCBIGene taxon: - NCBITaxon:227321 - NCBITaxon:9031 - NCBITaxon:9615 - NCBITaxon:9823 - NCBITaxon:9913 total_number: 194712 - categories: - biolink:AnatomicalEntity - biolink:BiologicalProcess - biolink:Cell - biolink:CellularComponent - biolink:ChemicalEntity - biolink:ChemicalSubstance - biolink:ClinicalModifier - biolink:Disease - biolink:GeneticInheritance - biolink:GrossAnatomicalStructure - biolink:MacromolecularComplexMixin - biolink:MolecularActivity - biolink:MolecularEntity - biolink:NamedThing - biolink:Occurrent - biolink:Onset - biolink:PathologicalEntityMixin - biolink:Pathway - biolink:PhenotypicFeature - biolink:PhenotypicQuality - biolink:Protein - biolink:RNAProduct - biolink:SmallMolecule - biolink:affects - biolink:affects_localization_of - biolink:biological_role_mixin - biolink:causes - biolink:chemical_role_mixin - biolink:close_match - biolink:coexists_with - biolink:contributes_to - biolink:derives_from - biolink:disease_has_basis_in - biolink:disease_has_location - biolink:has_attribute - biolink:has_part - biolink:increases_degradation_of - biolink:is_metabolite_of - biolink:located_in - biolink:manifestation_of - biolink:part_of - biolink:related_to - biolink:same_as - biolink:subclass_of - biolink:superclass_of - biolink:treated_by name: phenio_nodes namespaces: - CHEBI - EMAPA - FBbt - FYPO - GO - GOREL - HP - MESH - MONDO - MP - MPATH - OMIM - UBERON - WBPhenotype - WBbt - XPO - ZFA - ZP taxon: - missing taxon total_number: 227732 - categories: - biolink:Gene name: pombase_gene_nodes namespaces: - PomBase taxon: - NCBITaxon:4896 total_number: 5134 - categories: - biolink:Pathway name: reactome_pathway_nodes namespaces: - REACT taxon: - NCBITaxon:10090 - NCBITaxon:10116 - NCBITaxon:44689 - NCBITaxon:4896 - NCBITaxon:4932 - NCBITaxon:6239 - NCBITaxon:7227 - NCBITaxon:7955 - NCBITaxon:8364 - NCBITaxon:9031 - NCBITaxon:9606 - NCBITaxon:9615 - NCBITaxon:9823 - NCBITaxon:9913 total_number: 21427