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MP missing_objects: 31 missing_subject_namespaces: [] missing_subjects: 0 total_number: 114 uri: biolink:has_phenotype total_number: 114 - categories: - biolink:GeneToExpressionSiteAssociation missing: 40101 name: bgee_gene_to_expression_edges namespaces: - CL - ENSEMBL - NCBIGene - UBERON node_types: - categories: - biolink:Gene missing: 15434 name: ncbi_gene_nodes namespaces: - NCBIGene taxon: - NCBITaxon:9823 - NCBITaxon:9913 total_number: 15434 - categories: - biolink:AnatomicalEntity - biolink:GrossAnatomicalStructure missing: 157 name: phenio_nodes namespaces: - UBERON taxon: - missing taxon total_number: 157 predicates: - missing_object_namespaces: - CL missing_objects: 11 missing_subject_namespaces: - ENSEMBL missing_subjects: 40090 total_number: 266654 uri: biolink:expressed_in total_number: 266654 - categories: - biolink:ChemicalToDiseaseOrPhenotypicFeatureAssociation missing: 7676 name: ctd_chemical_to_disease_edges namespaces: - MESH - MONDO node_types: - categories: - biolink:Disease missing: 1689 name: phenio_nodes namespaces: - MONDO taxon: - missing taxon total_number: 1689 predicates: - missing_object_namespaces: - MESH missing_objects: 794 missing_subject_namespaces: - MESH missing_subjects: 6882 total_number: 37639 uri: biolink:treats total_number: 37639 - categories: - biolink:GeneToPhenotypicFeatureAssociation missing: 170 name: dictybase_gene_to_phenotype_edges namespaces: - DDPHENO - dictyBase node_types: - categories: - biolink:Gene missing: 507 name: dictybase_gene_nodes namespaces: - dictyBase taxon: - NCBITaxon:44689 total_number: 507 predicates: - missing_object_namespaces: - DDPHENO missing_objects: 170 missing_subject_namespaces: [] missing_subjects: 0 total_number: 1216 uri: biolink:has_phenotype total_number: 1216 - categories: - biolink:MacromolecularMachineToBiologicalProcessAssociation - biolink:MacromolecularMachineToCellularComponentAssociation - biolink:MacromolecularMachineToMolecularActivityAssociation missing: 87393 name: goa_go_annotation_edges namespaces: - AspGD - FB - GO - MGI - PomBase - RGD - SGD - UniProtKB - WB - ZFIN node_types: - categories: - biolink:BiologicalProcess - biolink:CellularComponent - biolink:MacromolecularComplexMixin - biolink:MolecularActivity - biolink:NamedThing - biolink:Occurrent - biolink:Pathway missing: 18140 name: phenio_nodes namespaces: - GO taxon: - missing taxon total_number: 18140 predicates: - missing_object_namespaces: [] missing_objects: 0 missing_subject_namespaces: - AspGD - FB - MGI - PomBase - RGD - SGD - UniProtKB - ZFIN missing_subjects: 18232 total_number: 23557 uri: biolink:active_in - missing_object_namespaces: [] missing_objects: 0 missing_subject_namespaces: - AspGD - FB - MGI - PomBase - RGD - SGD - UniProtKB - ZFIN missing_subjects: 66991 total_number: 270321 uri: biolink:actively_involved_in - missing_object_namespaces: [] missing_objects: 0 missing_subject_namespaces: - MGI - UniProtKB missing_subjects: 29 total_number: 32 uri: biolink:acts_upstream_of - missing_object_namespaces: [] missing_objects: 0 missing_subject_namespaces: - UniProtKB missing_subjects: 3 total_number: 7 uri: biolink:acts_upstream_of_negative_effect - missing_object_namespaces: [] missing_objects: 0 missing_subject_namespaces: - AspGD - MGI - RGD - SGD - UniProtKB - WB - ZFIN missing_subjects: 1679 total_number: 3451 uri: biolink:acts_upstream_of_or_within - missing_object_namespaces: [] missing_objects: 0 missing_subject_namespaces: - UniProtKB missing_subjects: 1 total_number: 1 uri: biolink:acts_upstream_of_or_within_positive_effect - missing_object_namespaces: [] missing_objects: 0 missing_subject_namespaces: - UniProtKB missing_subjects: 11 total_number: 16 uri: biolink:acts_upstream_of_positive_effect - missing_object_namespaces: [] missing_objects: 0 missing_subject_namespaces: - AspGD - RGD - UniProtKB missing_subjects: 232 total_number: 294 uri: biolink:colocalizes_with - missing_object_namespaces: [] missing_objects: 0 missing_subject_namespaces: - AspGD - PomBase - RGD - UniProtKB - ZFIN missing_subjects: 484 total_number: 601 uri: biolink:contributes_to - missing_object_namespaces: [] missing_objects: 0 missing_subject_namespaces: - AspGD - FB - MGI - PomBase - RGD - SGD - UniProtKB - WB - ZFIN missing_subjects: 63186 total_number: 135760 uri: biolink:enables - missing_object_namespaces: [] missing_objects: 0 missing_subject_namespaces: - AspGD - FB - MGI - RGD - SGD - UniProtKB - ZFIN missing_subjects: 50479 total_number: 105765 uri: biolink:located_in - missing_object_namespaces: [] missing_objects: 0 missing_subject_namespaces: - AspGD - FB - MGI - PomBase - RGD - SGD - UniProtKB - ZFIN missing_subjects: 14959 total_number: 19230 uri: biolink:part_of total_number: 559035 - categories: - biolink:DiseaseOrPhenotypicFeatureToGeneticInheritanceAssociation missing: 201 name: hpoa_disease_mode_of_inheritance_edges namespaces: - DECIPHER - HP - OMIM node_types: - categories: - biolink:GeneticInheritance missing: 7 name: phenio_nodes namespaces: - HP taxon: - missing taxon total_number: 7 predicates: - missing_object_namespaces: [] missing_objects: 0 missing_subject_namespaces: - DECIPHER - OMIM missing_subjects: 201 total_number: 207 uri: biolink:has_mode_of_inheritance total_number: 207 - categories: - biolink:DiseaseToPhenotypicFeatureAssociation missing: 4598 name: hpoa_disease_phenotype_edges namespaces: - DECIPHER - HP - MONDO - OMIM - ORPHA node_types: - categories: - biolink:Disease - biolink:PhenotypicQuality missing: 8466 name: phenio_nodes namespaces: - HP - MONDO taxon: - missing taxon total_number: 8466 predicates: - missing_object_namespaces: - HP missing_objects: 87 missing_subject_namespaces: - DECIPHER - OMIM - ORPHA missing_subjects: 4511 total_number: 118424 uri: biolink:has_phenotype total_number: 118424 - categories: - biolink:GeneToPhenotypicFeatureAssociation missing: 89 name: hpoa_gene_to_phenotype_edges namespaces: - HGNC - HP - NCBIGene node_types: - categories: - biolink:Gene missing: 118 name: hgnc_gene_nodes namespaces: - HGNC taxon: - NCBITaxon:9606 total_number: 118 - categories: - biolink:GeneticInheritance - biolink:PhenotypicQuality missing: 152 name: phenio_nodes namespaces: - HP taxon: - missing taxon total_number: 152 predicates: - missing_object_namespaces: - HP missing_objects: 85 missing_subject_namespaces: - NCBIGene missing_subjects: 4 total_number: 298 uri: biolink:has_phenotype total_number: 298 - categories: - biolink:GeneToDiseaseAssociation missing: 1171 name: omim_gene_to_disease_edges namespaces: - HGNC - MONDO - NCBIGene - OMIM node_types: - categories: - biolink:Gene missing: 237 name: hgnc_gene_nodes namespaces: - HGNC taxon: - NCBITaxon:9606 total_number: 237 - categories: - biolink:Disease missing: 805 name: phenio_nodes namespaces: - MONDO taxon: - missing taxon total_number: 805 predicates: - missing_object_namespaces: - OMIM missing_objects: 235 missing_subject_namespaces: - NCBIGene - OMIM missing_subjects: 522 total_number: 749 uri: biolink:gene_associated_with_condition - missing_object_namespaces: - OMIM missing_objects: 70 missing_subject_namespaces: - NCBIGene - OMIM missing_subjects: 347 total_number: 370 uri: biolink:risk_affected_by total_number: 1119 - categories: - biolink:GeneToGeneHomologyAssociation missing: 59958 name: panther_genome_orthologs_edges namespaces: - ENSEMBL - FB - HGNC - MGI - NCBIGene - POMBASE - RGD - SGD - UniProtKB - WB - Xenbase - ZFIN - dictyBase node_types: - categories: - biolink:Gene missing: 68517 name: alliance_gene_nodes namespaces: - FB - MGI - RGD - SGD - WB - Xenbase - ZFIN taxon: - NCBITaxon:10090 - NCBITaxon:10116 - NCBITaxon:559292 - NCBITaxon:6239 - NCBITaxon:7227 - NCBITaxon:7955 - NCBITaxon:8364 - missing taxon total_number: 91303 - categories: - biolink:Gene missing: 5877 name: dictybase_gene_nodes namespaces: - dictyBase taxon: - NCBITaxon:44689 total_number: 5877 - categories: - biolink:Gene missing: 18913 name: hgnc_gene_nodes namespaces: - HGNC taxon: - NCBITaxon:9606 - missing taxon total_number: 18913 - categories: - biolink:Gene missing: 30638 name: ncbi_gene_nodes namespaces: - NCBIGene taxon: - NCBITaxon:9615 - NCBITaxon:9823 - NCBITaxon:9913 total_number: 32316 predicates: - missing_object_namespaces: - ENSEMBL - FB - MGI - NCBIGene - POMBASE - RGD - UniProtKB - WB - Xenbase - ZFIN missing_objects: 57026 missing_subject_namespaces: - ENSEMBL - FB - HGNC - MGI - NCBIGene - POMBASE - RGD - UniProtKB - WB - Xenbase - ZFIN missing_subjects: 55086 total_number: 999949 uri: biolink:orthologous_to total_number: 999949 - categories: - biolink:GeneToPhenotypicFeatureAssociation missing: 5984 name: pombase_gene_to_phenotype_edges namespaces: - FYPO - PomBase node_types: - categories: - biolink:Gene missing: 4967 name: pombase_gene_nodes namespaces: - PomBase taxon: - NCBITaxon:4896 total_number: 4967 predicates: - missing_object_namespaces: - FYPO missing_objects: 5940 missing_subject_namespaces: - PomBase missing_subjects: 44 total_number: 86789 uri: biolink:has_phenotype total_number: 86789 - categories: - biolink:ChemicalToPathwayAssociation missing: 2034 name: reactome_chemical_to_pathway_edges namespaces: - CHEBI - REACT node_types: - categories: - biolink:Pathway missing: 8661 name: reactome_pathway_nodes namespaces: - REACT taxon: - NCBITaxon:10090 - NCBITaxon:10116 - NCBITaxon:44689 - NCBITaxon:4896 - NCBITaxon:4932 - NCBITaxon:6239 - NCBITaxon:7227 - NCBITaxon:7955 - NCBITaxon:8364 - NCBITaxon:9031 - NCBITaxon:9606 - NCBITaxon:9615 - NCBITaxon:9823 - NCBITaxon:9913 total_number: 8661 predicates: - missing_object_namespaces: [] missing_objects: 0 missing_subject_namespaces: - CHEBI missing_subjects: 2034 total_number: 44078 uri: biolink:participates_in total_number: 44078 - categories: - biolink:GeneToPathwayAssociation missing: 55742 name: reactome_gene_to_pathway_edges namespaces: - NCBIGene - REACT - UniProtKB node_types: - categories: - biolink:Pathway missing: 13424 name: reactome_pathway_nodes namespaces: - REACT taxon: - NCBITaxon:10090 - NCBITaxon:10116 - NCBITaxon:44689 - NCBITaxon:4896 - NCBITaxon:4932 - NCBITaxon:6239 - NCBITaxon:7227 - NCBITaxon:7955 - NCBITaxon:8364 - NCBITaxon:9031 - NCBITaxon:9606 - NCBITaxon:9615 - NCBITaxon:9823 - NCBITaxon:9913 total_number: 13424 predicates: - missing_object_namespaces: [] missing_objects: 0 missing_subject_namespaces: - NCBIGene - UniProtKB missing_subjects: 55742 total_number: 189786 uri: biolink:participates_in total_number: 189786 - categories: - biolink:PairwiseGeneToGeneInteraction missing: 104365 name: string_protein_links_edges namespaces: - HGNC - NCBIGene - UniProtKB node_types: - categories: - biolink:Gene missing: 0 name: hgnc_gene_nodes namespaces: - HGNC taxon: - NCBITaxon:9606 total_number: 865 - categories: - biolink:Gene missing: 0 name: ncbi_gene_nodes namespaces: - NCBIGene taxon: - NCBITaxon:227321 - NCBITaxon:9031 - NCBITaxon:9913 total_number: 1578 predicates: - missing_object_namespaces: - NCBIGene - UniProtKB missing_objects: 104365 missing_subject_namespaces: - NCBIGene - UniProtKB missing_subjects: 104365 total_number: 2654552 uri: biolink:interacts_with total_number: 2654552 - categories: - biolink:GeneToPhenotypicFeatureAssociation missing: 63 name: xenbase_gene_to_phenotype_edges namespaces: - XPO - Xenbase node_types: - categories: - biolink:Gene missing: 4 name: alliance_gene_nodes namespaces: - Xenbase taxon: - NCBITaxon:8355 - NCBITaxon:8364 total_number: 4 - categories: - biolink:PhenotypicQuality missing: 146 name: phenio_nodes namespaces: - XPO taxon: - missing taxon total_number: 146 predicates: - missing_object_namespaces: - XPO missing_objects: 2 missing_subject_namespaces: - Xenbase missing_subjects: 61 total_number: 275 uri: biolink:has_phenotype total_number: 275 - categories: - biolink:GeneToGeneHomologyAssociation missing: 15303 name: xenbase_non_entrez_orthologs_edges namespaces: - HGNC - MGI - OMIM - Xenbase - ZFIN node_types: - categories: - biolink:Gene missing: 26557 name: alliance_gene_nodes namespaces: - MGI - ZFIN taxon: - NCBITaxon:10090 - NCBITaxon:7955 - missing taxon total_number: 26557 - categories: - biolink:Gene missing: 12399 name: hgnc_gene_nodes namespaces: - HGNC taxon: - NCBITaxon:9606 total_number: 12399 predicates: - missing_object_namespaces: - MGI - OMIM - ZFIN missing_objects: 348 missing_subject_namespaces: - Xenbase missing_subjects: 14955 total_number: 44287 uri: biolink:orthologous_to total_number: 44287 - categories: - biolink:GeneToGeneHomologyAssociation missing: 44287 name: xenbase_orthologs_edges namespaces: - HGNC - NCBIGene - Xenbase node_types: - categories: - biolink:Gene missing: 14918 name: hgnc_gene_nodes namespaces: - HGNC taxon: - NCBITaxon:9606 - missing taxon total_number: 14918 predicates: - missing_object_namespaces: - NCBIGene missing_objects: 28688 missing_subject_namespaces: - Xenbase missing_subjects: 15599 total_number: 45104 uri: biolink:orthologous_to total_number: 45104 - categories: - biolink:GeneToPhenotypicFeatureAssociation missing: 1618 name: zfin_gene_to_phenotype_edges namespaces: - ZFIN - ZP node_types: - categories: - biolink:Gene missing: 438 name: alliance_gene_nodes namespaces: - ZFIN taxon: - NCBITaxon:7955 total_number: 438 predicates: - missing_object_namespaces: - ZP missing_objects: 1618 missing_subject_namespaces: [] missing_subjects: 0 total_number: 2846 uri: biolink:has_phenotype total_number: 2846 edges: - categories: - biolink:GeneToExpressionSiteAssociation missing: 0 name: alliance_gene_to_expression_edges namespaces: - EMAPA - FB - FBbt - GO - MGI - RGD - SGD - WB - WBbt - ZFA - ZFIN node_types: - categories: - biolink:Gene missing: 54151 name: alliance_gene_nodes namespaces: - FB - MGI - RGD - SGD - WB - ZFIN taxon: - NCBITaxon:10090 - NCBITaxon:10116 - NCBITaxon:559292 - NCBITaxon:6239 - NCBITaxon:7227 - NCBITaxon:7955 - missing taxon total_number: 54151 - categories: - biolink:AnatomicalEntity - biolink:Cell - biolink:CellularComponent - biolink:GrossAnatomicalStructure - biolink:MacromolecularComplexMixin - biolink:NamedThing missing: 13368 name: phenio_nodes namespaces: - EMAPA - FBbt - GO - WBbt - ZFA taxon: - missing taxon total_number: 13368 predicates: - missing_object_namespaces: [] missing_objects: 0 missing_subject_namespaces: [] missing_subjects: 0 total_number: 1790844 uri: biolink:expressed_in total_number: 1790844 - categories: - biolink:GeneToPhenotypicFeatureAssociation missing: 0 name: alliance_gene_to_phenotype_edges namespaces: - MGI - MP - RGD - WB - WBPhenotype node_types: - categories: - biolink:Gene missing: 19669 name: alliance_gene_nodes namespaces: - MGI - RGD - WB taxon: - NCBITaxon:10090 - NCBITaxon:10116 - NCBITaxon:6239 - missing taxon total_number: 19669 - categories: - biolink:PhenotypicQuality missing: 12258 name: phenio_nodes namespaces: - MP - WBPhenotype taxon: - missing taxon total_number: 12258 predicates: - missing_object_namespaces: [] missing_objects: 0 missing_subject_namespaces: [] missing_subjects: 0 total_number: 298084 uri: biolink:has_phenotype total_number: 298084 - categories: - biolink:GeneToExpressionSiteAssociation missing: 0 name: bgee_gene_to_expression_edges namespaces: - NCBIGene - UBERON node_types: - categories: - biolink:Gene missing: 31877 name: ncbi_gene_nodes namespaces: - NCBIGene taxon: - NCBITaxon:9823 - NCBITaxon:9913 total_number: 31877 - categories: - biolink:AnatomicalEntity - biolink:GrossAnatomicalStructure missing: 139 name: phenio_nodes namespaces: - UBERON taxon: - missing taxon total_number: 139 predicates: - missing_object_namespaces: [] missing_objects: 0 missing_subject_namespaces: [] missing_subjects: 0 total_number: 236565 uri: biolink:expressed_in total_number: 236565 - categories: - biolink:MacromolecularMachineToBiologicalProcessAssociation - biolink:MacromolecularMachineToCellularComponentAssociation - biolink:MacromolecularMachineToMolecularActivityAssociation missing: 0 name: goa_go_annotation_edges namespaces: - FB - GO - HGNC - MGI - PomBase - RGD - SGD - WB - ZFIN - dictyBase node_types: - categories: - biolink:Gene missing: 111376 name: alliance_gene_nodes namespaces: - FB - MGI - RGD - SGD - WB - ZFIN taxon: - NCBITaxon:10090 - NCBITaxon:10116 - NCBITaxon:559292 - NCBITaxon:6239 - NCBITaxon:7227 - NCBITaxon:7955 - missing taxon total_number: 111376 - categories: - biolink:Gene missing: 9490 name: dictybase_gene_nodes namespaces: - dictyBase taxon: - NCBITaxon:44689 total_number: 9490 - categories: - biolink:Gene missing: 19540 name: hgnc_gene_nodes namespaces: - HGNC taxon: - NCBITaxon:9606 - missing taxon total_number: 19540 - categories: - biolink:CellularComponent - biolink:MacromolecularComplexMixin - biolink:Occurrent - biolink:Pathway missing: 24406 name: phenio_nodes namespaces: - GO taxon: - missing taxon total_number: 24406 - categories: - biolink:Gene missing: 5131 name: pombase_gene_nodes namespaces: - PomBase taxon: - NCBITaxon:4896 total_number: 5131 predicates: - missing_object_namespaces: [] missing_objects: 0 missing_subject_namespaces: [] missing_subjects: 0 total_number: 139221 uri: biolink:active_in - missing_object_namespaces: [] missing_objects: 0 missing_subject_namespaces: [] missing_subjects: 0 total_number: 675610 uri: biolink:actively_involved_in - missing_object_namespaces: [] missing_objects: 0 missing_subject_namespaces: [] missing_subjects: 0 total_number: 9256 uri: biolink:acts_upstream_of - missing_object_namespaces: [] missing_objects: 0 missing_subject_namespaces: [] missing_subjects: 0 total_number: 159 uri: biolink:acts_upstream_of_negative_effect - missing_object_namespaces: [] missing_objects: 0 missing_subject_namespaces: [] missing_subjects: 0 total_number: 199805 uri: biolink:acts_upstream_of_or_within - missing_object_namespaces: [] missing_objects: 0 missing_subject_namespaces: [] missing_subjects: 0 total_number: 182 uri: biolink:acts_upstream_of_or_within_negative_effect - missing_object_namespaces: [] missing_objects: 0 missing_subject_namespaces: [] missing_subjects: 0 total_number: 436 uri: biolink:acts_upstream_of_or_within_positive_effect - missing_object_namespaces: [] missing_objects: 0 missing_subject_namespaces: [] missing_subjects: 0 total_number: 250 uri: biolink:acts_upstream_of_positive_effect - missing_object_namespaces: [] missing_objects: 0 missing_subject_namespaces: [] missing_subjects: 0 total_number: 4219 uri: biolink:colocalizes_with - missing_object_namespaces: [] missing_objects: 0 missing_subject_namespaces: [] missing_subjects: 0 total_number: 6843 uri: biolink:contributes_to - missing_object_namespaces: [] missing_objects: 0 missing_subject_namespaces: [] missing_subjects: 0 total_number: 780185 uri: biolink:enables - missing_object_namespaces: [] missing_objects: 0 missing_subject_namespaces: [] missing_subjects: 0 total_number: 484267 uri: biolink:located_in - missing_object_namespaces: [] missing_objects: 0 missing_subject_namespaces: [] missing_subjects: 0 total_number: 77593 uri: biolink:part_of total_number: 2378026 - categories: - biolink:DiseaseOrPhenotypicFeatureToGeneticInheritanceAssociation missing: 0 name: hpoa_disease_mode_of_inheritance_edges namespaces: - HGNC - HP - MONDO node_types: - categories: - biolink:Gene missing: 7 name: hgnc_gene_nodes namespaces: - HGNC taxon: - NCBITaxon:9606 total_number: 7 - categories: - biolink:Disease - biolink:GeneticInheritance missing: 7974 name: phenio_nodes namespaces: - HP - MONDO taxon: - missing taxon total_number: 7974 predicates: - missing_object_namespaces: [] missing_objects: 0 missing_subject_namespaces: [] missing_subjects: 0 total_number: 8431 uri: biolink:has_mode_of_inheritance total_number: 8431 - categories: - biolink:DiseaseToPhenotypicFeatureAssociation missing: 0 name: hpoa_disease_phenotype_edges namespaces: - HGNC - HP - MONDO node_types: - categories: - biolink:Gene missing: 8 name: hgnc_gene_nodes namespaces: - HGNC taxon: - NCBITaxon:9606 total_number: 8 - categories: - biolink:Disease - biolink:PhenotypicQuality missing: 16398 name: phenio_nodes namespaces: - HP - MONDO taxon: - missing taxon total_number: 16398 predicates: - missing_object_namespaces: [] missing_objects: 0 missing_subject_namespaces: [] missing_subjects: 0 total_number: 120048 uri: biolink:has_phenotype total_number: 120048 - categories: - biolink:GeneToPhenotypicFeatureAssociation missing: 0 name: hpoa_gene_to_phenotype_edges namespaces: - HGNC - HP node_types: - categories: - biolink:Gene missing: 4891 name: hgnc_gene_nodes namespaces: - HGNC taxon: - NCBITaxon:9606 total_number: 4891 - categories: - biolink:ClinicalModifier - biolink:GeneticInheritance - biolink:PhenotypicFeature - biolink:PhenotypicQuality missing: 9248 name: phenio_nodes namespaces: - HP taxon: - missing taxon total_number: 9248 predicates: - missing_object_namespaces: [] missing_objects: 0 missing_subject_namespaces: [] missing_subjects: 0 total_number: 268685 uri: biolink:has_phenotype total_number: 268685 - categories: - biolink:GeneToDiseaseAssociation missing: 0 name: omim_gene_to_disease_edges namespaces: - HGNC - MONDO node_types: - categories: - biolink:Gene missing: 4077 name: hgnc_gene_nodes namespaces: - HGNC taxon: - NCBITaxon:9606 total_number: 4173 - categories: - biolink:Disease missing: 5453 name: phenio_nodes namespaces: - MONDO taxon: - missing taxon total_number: 5458 predicates: - missing_object_namespaces: [] missing_objects: 0 missing_subject_namespaces: [] missing_subjects: 0 total_number: 5683 uri: biolink:gene_associated_with_condition - missing_object_namespaces: [] missing_objects: 0 missing_subject_namespaces: [] missing_subjects: 0 total_number: 704 uri: biolink:risk_affected_by total_number: 6387 - categories: - biolink:GeneToGeneHomologyAssociation missing: 0 name: panther_genome_orthologs_edges namespaces: - FB - HGNC - MGI - NCBIGene - RGD - SGD - WB - Xenbase - ZFIN - dictyBase node_types: - categories: - biolink:Gene missing: 15189 name: alliance_gene_nodes namespaces: - FB - MGI - RGD - SGD - WB - Xenbase - ZFIN taxon: - NCBITaxon:10090 - NCBITaxon:10116 - NCBITaxon:559292 - NCBITaxon:6239 - NCBITaxon:7227 - NCBITaxon:7955 - NCBITaxon:8364 - missing taxon total_number: 92560 - categories: - biolink:Gene missing: 5756 name: dictybase_gene_nodes namespaces: - dictyBase taxon: - NCBITaxon:44689 total_number: 5756 - categories: - biolink:Gene missing: 19081 name: hgnc_gene_nodes namespaces: - HGNC taxon: - NCBITaxon:9606 - missing taxon total_number: 19081 - categories: - biolink:Gene missing: 2018 name: ncbi_gene_nodes namespaces: - NCBIGene taxon: - NCBITaxon:9615 - NCBITaxon:9823 - NCBITaxon:9913 total_number: 32571 predicates: - missing_object_namespaces: [] missing_objects: 0 missing_subject_namespaces: [] missing_subjects: 0 total_number: 874014 uri: biolink:orthologous_to total_number: 874014 - categories: - null missing: 0 name: phenio_edges namespaces: - CHEBI - EMAPA - FBbt - GO - HP - MONDO - MP - MPATH - UBERON - WBPhenotype - WBbt - XPO - ZFA - ZP node_types: - categories: - biolink:AnatomicalEntity - biolink:BiologicalProcess - biolink:Cell - biolink:CellularComponent - biolink:ChemicalEntity - biolink:ChemicalSubstance - biolink:ClinicalModifier - biolink:Disease - biolink:GeneticInheritance - biolink:GrossAnatomicalStructure - biolink:MacromolecularComplexMixin - biolink:MolecularEntity - biolink:NamedThing - biolink:Occurrent - biolink:PathologicalEntityMixin - biolink:Pathway - biolink:PhenotypicFeature - biolink:PhenotypicQuality - biolink:Protein - biolink:RNAProduct - biolink:SmallMolecule - biolink:biological_role_mixin - biolink:chemical_role_mixin - biolink:is_metabolite_of missing: 117862 name: phenio_nodes namespaces: - CHEBI - EMAPA - FBbt - GO - HP - MONDO - MP - MPATH - UBERON - WBPhenotype - WBbt - XPO - ZFA - ZP taxon: - missing taxon total_number: 211206 predicates: - missing_object_namespaces: [] missing_objects: 0 missing_subject_namespaces: [] missing_subjects: 0 total_number: 140922 uri: biolink:related_to - missing_object_namespaces: [] missing_objects: 0 missing_subject_namespaces: [] missing_subjects: 0 total_number: 347833 uri: biolink:subclass_of total_number: 488755 - categories: - biolink:ChemicalToPathwayAssociation missing: 0 name: reactome_chemical_to_pathway_edges namespaces: - CHEBI - REACT node_types: - categories: - biolink:ChemicalEntity - biolink:ChemicalSubstance - biolink:MolecularEntity - biolink:PhenotypicQuality - biolink:Protein - biolink:RNAProduct - biolink:SmallMolecule - biolink:biological_role_mixin - biolink:chemical_role_mixin missing: 360 name: phenio_nodes namespaces: - CHEBI taxon: - missing taxon total_number: 360 - categories: - biolink:Pathway missing: 12624 name: reactome_pathway_nodes namespaces: - REACT taxon: - NCBITaxon:10090 - NCBITaxon:10116 - NCBITaxon:44689 - NCBITaxon:4896 - NCBITaxon:4932 - NCBITaxon:6239 - NCBITaxon:7227 - NCBITaxon:7955 - NCBITaxon:8364 - NCBITaxon:9031 - NCBITaxon:9606 - NCBITaxon:9615 - NCBITaxon:9823 - NCBITaxon:9913 total_number: 12624 predicates: - missing_object_namespaces: [] missing_objects: 0 missing_subject_namespaces: [] missing_subjects: 0 total_number: 53976 uri: biolink:participates_in total_number: 53976 - categories: - biolink:GeneToPathwayAssociation missing: 0 name: reactome_gene_to_pathway_edges namespaces: - HGNC - NCBIGene - REACT node_types: - categories: - biolink:Gene missing: 10937 name: hgnc_gene_nodes namespaces: - HGNC taxon: - NCBITaxon:9606 - missing taxon total_number: 10937 - categories: - biolink:Gene missing: 141 name: ncbi_gene_nodes namespaces: - NCBIGene taxon: - NCBITaxon:9031 - NCBITaxon:9615 - NCBITaxon:9823 - NCBITaxon:9913 total_number: 141 - categories: - biolink:Pathway missing: 2349 name: reactome_pathway_nodes namespaces: - REACT taxon: - NCBITaxon:9031 - NCBITaxon:9606 - NCBITaxon:9615 - NCBITaxon:9823 - NCBITaxon:9913 total_number: 2349 predicates: - missing_object_namespaces: [] missing_objects: 0 missing_subject_namespaces: [] missing_subjects: 0 total_number: 49019 uri: biolink:participates_in total_number: 49019 - categories: - biolink:PairwiseGeneToGeneInteraction missing: 0 name: string_protein_links_edges namespaces: - HGNC - NCBIGene node_types: - categories: - biolink:Gene missing: 0 name: hgnc_gene_nodes namespaces: - HGNC taxon: - NCBITaxon:9606 - missing taxon total_number: 16338 - categories: - biolink:Gene missing: 0 name: ncbi_gene_nodes namespaces: - NCBIGene taxon: - NCBITaxon:227321 - NCBITaxon:9031 - NCBITaxon:9913 total_number: 811 predicates: - missing_object_namespaces: [] missing_objects: 0 missing_subject_namespaces: [] missing_subjects: 0 total_number: 492844 uri: biolink:interacts_with total_number: 492844 - categories: - biolink:GeneToPhenotypicFeatureAssociation missing: 0 name: xenbase_gene_to_phenotype_edges namespaces: - XPO - Xenbase node_types: - categories: - biolink:Gene missing: 517 name: alliance_gene_nodes namespaces: - Xenbase taxon: - NCBITaxon:8355 - NCBITaxon:8364 total_number: 517 - categories: - biolink:PhenotypicQuality missing: 481 name: phenio_nodes namespaces: - XPO taxon: - missing taxon total_number: 481 predicates: - missing_object_namespaces: [] missing_objects: 0 missing_subject_namespaces: [] missing_subjects: 0 total_number: 2317 uri: biolink:has_phenotype total_number: 2317 - categories: - biolink:GeneToPhenotypicFeatureAssociation missing: 0 name: zfin_gene_to_phenotype_edges namespaces: - ZFIN - ZP node_types: - categories: - biolink:Gene missing: 7280 name: alliance_gene_nodes namespaces: - ZFIN taxon: - NCBITaxon:7955 total_number: 7280 - categories: - biolink:PhenotypicQuality missing: 23529 name: phenio_nodes namespaces: - ZP taxon: - missing taxon total_number: 23529 predicates: - missing_object_namespaces: [] missing_objects: 0 missing_subject_namespaces: [] missing_subjects: 0 total_number: 139344 uri: biolink:has_phenotype total_number: 139344 nodes: - categories: - biolink:Gene name: alliance_gene_nodes namespaces: - FB - MGI - RGD - SGD - WB - Xenbase - ZFIN taxon: - NCBITaxon:10090 - NCBITaxon:10116 - NCBITaxon:559292 - NCBITaxon:6239 - NCBITaxon:7227 - NCBITaxon:7955 - NCBITaxon:8355 - NCBITaxon:8364 - missing taxon total_number: 309111 - categories: - biolink:Gene name: dictybase_gene_nodes namespaces: - dictyBase taxon: - NCBITaxon:44689 total_number: 14222 - categories: - biolink:Gene name: hgnc_gene_nodes namespaces: - HGNC taxon: - NCBITaxon:9606 - missing taxon total_number: 43607 - categories: - biolink:Gene name: ncbi_gene_nodes namespaces: - NCBIGene taxon: - NCBITaxon:227321 - NCBITaxon:9031 - NCBITaxon:9615 - NCBITaxon:9823 - NCBITaxon:9913 total_number: 194714 - categories: - biolink:AnatomicalEntity - biolink:BiologicalProcess - biolink:Cell - biolink:CellularComponent - biolink:ChemicalEntity - biolink:ChemicalSubstance - biolink:ClinicalModifier - biolink:Disease - biolink:GeneticInheritance - biolink:GrossAnatomicalStructure - biolink:MacromolecularComplexMixin - biolink:MolecularActivity - biolink:MolecularEntity - biolink:NamedThing - biolink:Occurrent - biolink:PathologicalEntityMixin - biolink:Pathway - biolink:PhenotypicFeature - biolink:PhenotypicQuality - biolink:Protein - biolink:RNAProduct - biolink:SmallMolecule - biolink:affects - biolink:affects_localization_of - biolink:biological_role_mixin - biolink:causes - biolink:chemical_role_mixin - biolink:close_match - biolink:coexists_with - biolink:contributes_to - biolink:derives_from - biolink:disease_has_basis_in - biolink:disease_has_location - biolink:has_attribute - biolink:has_part - biolink:increases_degradation_of - biolink:is_metabolite_of - biolink:located_in - biolink:manifestation_of - biolink:part_of - biolink:related_to - biolink:same_as - biolink:subclass_of - biolink:superclass_of - biolink:treated_by name: phenio_nodes namespaces: - CHEBI - EMAPA - FBbt - FYPO - GO - GOREL - HP - MESH - MONDO - MP - MPATH - OMIM - UBERON - WBPhenotype - WBbt - XPO - ZFA - ZP taxon: - missing taxon total_number: 227174 - categories: - biolink:Gene name: pombase_gene_nodes namespaces: - PomBase taxon: - NCBITaxon:4896 total_number: 5134 - categories: - biolink:Pathway name: reactome_pathway_nodes namespaces: - REACT taxon: - NCBITaxon:10090 - NCBITaxon:10116 - NCBITaxon:44689 - NCBITaxon:4896 - NCBITaxon:4932 - NCBITaxon:6239 - NCBITaxon:7227 - NCBITaxon:7955 - NCBITaxon:8364 - NCBITaxon:9031 - NCBITaxon:9606 - NCBITaxon:9615 - NCBITaxon:9823 - NCBITaxon:9913 total_number: 21427