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MP missing_objects: 40 missing_subject_namespaces: [] missing_subjects: 0 total_number: 167 uri: biolink:has_phenotype total_number: 167 - categories: - null missing: 40101 name: bgee_gene_to_expression_edges namespaces: - CL - ENSEMBL - NCBIGene - UBERON node_types: - categories: - biolink:Gene missing: 15434 name: ncbi_gene_nodes namespaces: - NCBIGene taxon: - NCBITaxon:9823 - NCBITaxon:9913 total_number: 15434 - categories: - biolink:AnatomicalEntity - biolink:GrossAnatomicalStructure missing: 157 name: phenio_nodes namespaces: - UBERON taxon: - missing taxon total_number: 157 predicates: - missing_object_namespaces: - CL missing_objects: 11 missing_subject_namespaces: - ENSEMBL missing_subjects: 40090 total_number: 266654 uri: biolink:expressed_in total_number: 266654 - categories: - biolink:ChemicalToDiseaseOrPhenotypicFeatureAssociation missing: 7665 name: ctd_chemical_to_disease_edges namespaces: - MESH - MONDO node_types: - categories: - biolink:Disease missing: 1689 name: phenio_nodes namespaces: - MONDO taxon: - missing taxon total_number: 1689 predicates: - missing_object_namespaces: - MESH missing_objects: 794 missing_subject_namespaces: - MESH missing_subjects: 6871 total_number: 37606 uri: biolink:treats total_number: 37606 - categories: - biolink:GeneToPhenotypicFeatureAssociation missing: 170 name: dictybase_gene_to_phenotype_edges namespaces: - DDPHENO - dictyBase node_types: - categories: - biolink:Gene missing: 507 name: dictybase_gene_nodes namespaces: - dictyBase taxon: - NCBITaxon:44689 total_number: 507 predicates: - missing_object_namespaces: - DDPHENO missing_objects: 170 missing_subject_namespaces: [] missing_subjects: 0 total_number: 1216 uri: biolink:has_phenotype total_number: 1216 - categories: - biolink:MacromolecularMachineToBiologicalProcessAssociation - biolink:MacromolecularMachineToCellularComponentAssociation - biolink:MacromolecularMachineToMolecularActivityAssociation missing: 87395 name: goa_go_annotation_edges namespaces: - AspGD - FB - GO - MGI - PomBase - RGD - SGD - UniProtKB - WB - ZFIN node_types: - categories: - biolink:BiologicalProcess - biolink:CellularComponent - biolink:MacromolecularComplexMixin - biolink:MolecularActivity - biolink:NamedThing - biolink:Occurrent - biolink:Pathway missing: 18135 name: phenio_nodes namespaces: - GO taxon: - missing taxon total_number: 18135 predicates: - missing_object_namespaces: [] missing_objects: 0 missing_subject_namespaces: - AspGD - FB - MGI - PomBase - RGD - SGD - UniProtKB - ZFIN missing_subjects: 18233 total_number: 23559 uri: biolink:active_in - missing_object_namespaces: [] missing_objects: 0 missing_subject_namespaces: - AspGD - FB - MGI - PomBase - RGD - SGD - UniProtKB - ZFIN missing_subjects: 66994 total_number: 270290 uri: biolink:actively_involved_in - missing_object_namespaces: [] missing_objects: 0 missing_subject_namespaces: - MGI - UniProtKB missing_subjects: 29 total_number: 32 uri: biolink:acts_upstream_of - missing_object_namespaces: [] missing_objects: 0 missing_subject_namespaces: - UniProtKB missing_subjects: 3 total_number: 7 uri: biolink:acts_upstream_of_negative_effect - missing_object_namespaces: [] missing_objects: 0 missing_subject_namespaces: - AspGD - MGI - RGD - SGD - UniProtKB - WB - ZFIN missing_subjects: 1679 total_number: 3451 uri: biolink:acts_upstream_of_or_within - missing_object_namespaces: [] missing_objects: 0 missing_subject_namespaces: - UniProtKB missing_subjects: 1 total_number: 1 uri: biolink:acts_upstream_of_or_within_positive_effect - missing_object_namespaces: [] missing_objects: 0 missing_subject_namespaces: - UniProtKB missing_subjects: 11 total_number: 16 uri: biolink:acts_upstream_of_positive_effect - missing_object_namespaces: [] missing_objects: 0 missing_subject_namespaces: - AspGD - RGD - UniProtKB missing_subjects: 232 total_number: 294 uri: biolink:colocalizes_with - missing_object_namespaces: [] missing_objects: 0 missing_subject_namespaces: - AspGD - PomBase - RGD - UniProtKB - ZFIN missing_subjects: 484 total_number: 601 uri: biolink:contributes_to - missing_object_namespaces: [] missing_objects: 0 missing_subject_namespaces: - AspGD - FB - MGI - PomBase - RGD - SGD - UniProtKB - WB - ZFIN missing_subjects: 63188 total_number: 135762 uri: biolink:enables - missing_object_namespaces: [] missing_objects: 0 missing_subject_namespaces: - AspGD - FB - MGI - RGD - SGD - UniProtKB - ZFIN missing_subjects: 50478 total_number: 105760 uri: biolink:located_in - missing_object_namespaces: [] missing_objects: 0 missing_subject_namespaces: - AspGD - FB - MGI - PomBase - RGD - SGD - UniProtKB - ZFIN missing_subjects: 14961 total_number: 19225 uri: biolink:part_of total_number: 558998 - categories: - biolink:DiseaseOrPhenotypicFeatureToGeneticInheritanceAssociation missing: 196 name: hpoa_disease_mode_of_inheritance_edges namespaces: - DECIPHER - HP - OMIM node_types: - categories: - biolink:GeneticInheritance missing: 7 name: phenio_nodes namespaces: - HP taxon: - missing taxon total_number: 7 predicates: - missing_object_namespaces: [] missing_objects: 0 missing_subject_namespaces: - DECIPHER - OMIM missing_subjects: 196 total_number: 202 uri: biolink:has_mode_of_inheritance total_number: 202 - categories: - biolink:DiseaseToPhenotypicFeatureAssociation missing: 4573 name: hpoa_disease_phenotype_edges namespaces: - DECIPHER - HP - MONDO - OMIM - ORPHA node_types: - categories: - biolink:Disease - biolink:PhenotypicQuality missing: 8442 name: phenio_nodes namespaces: - HP - MONDO taxon: - missing taxon total_number: 8442 predicates: - missing_object_namespaces: - HP missing_objects: 67 missing_subject_namespaces: - DECIPHER - OMIM - ORPHA missing_subjects: 4506 total_number: 118319 uri: biolink:has_phenotype total_number: 118319 - categories: - biolink:GeneToPhenotypicFeatureAssociation missing: 70 name: hpoa_gene_to_phenotype_edges namespaces: - HGNC - HP - NCBIGene node_types: - categories: - biolink:Gene missing: 98 name: hgnc_gene_nodes namespaces: - HGNC taxon: - NCBITaxon:9606 total_number: 98 - categories: - biolink:GeneticInheritance - biolink:PhenotypicQuality missing: 152 name: phenio_nodes namespaces: - HP taxon: - missing taxon total_number: 152 predicates: - missing_object_namespaces: - HP missing_objects: 66 missing_subject_namespaces: - NCBIGene missing_subjects: 4 total_number: 275 uri: biolink:has_phenotype total_number: 275 - categories: - biolink:GeneToDiseaseAssociation missing: 1142 name: omim_gene_to_disease_edges namespaces: - HGNC - MONDO - NCBIGene - OMIM node_types: - categories: - biolink:Gene missing: 208 name: hgnc_gene_nodes namespaces: - HGNC taxon: - NCBITaxon:9606 total_number: 208 - categories: - biolink:Disease missing: 806 name: phenio_nodes namespaces: - MONDO taxon: - missing taxon total_number: 806 predicates: - missing_object_namespaces: - OMIM missing_objects: 206 missing_subject_namespaces: - NCBIGene - OMIM missing_subjects: 522 total_number: 721 uri: biolink:gene_associated_with_condition - missing_object_namespaces: - OMIM missing_objects: 69 missing_subject_namespaces: - NCBIGene - OMIM missing_subjects: 347 total_number: 369 uri: biolink:risk_affected_by total_number: 1090 - categories: - biolink:GeneToGeneHomologyAssociation missing: 59963 name: panther_genome_orthologs_edges namespaces: - ENSEMBL - FB - HGNC - MGI - NCBIGene - POMBASE - RGD - SGD - UniProtKB - WB - Xenbase - ZFIN - dictyBase node_types: - categories: - biolink:Gene missing: 68505 name: alliance_gene_nodes namespaces: - FB - MGI - RGD - SGD - WB - Xenbase - ZFIN taxon: - NCBITaxon:10090 - NCBITaxon:10116 - NCBITaxon:559292 - NCBITaxon:6239 - NCBITaxon:7227 - NCBITaxon:7955 - NCBITaxon:8364 - missing taxon total_number: 91299 - categories: - biolink:Gene missing: 5877 name: dictybase_gene_nodes namespaces: - dictyBase taxon: - NCBITaxon:44689 total_number: 5877 - categories: - biolink:Gene missing: 18912 name: hgnc_gene_nodes namespaces: - HGNC taxon: - NCBITaxon:9606 - missing taxon total_number: 18912 - categories: - biolink:Gene missing: 30631 name: ncbi_gene_nodes namespaces: - NCBIGene taxon: - NCBITaxon:9615 - NCBITaxon:9823 - NCBITaxon:9913 total_number: 32316 predicates: - missing_object_namespaces: - ENSEMBL - FB - MGI - NCBIGene - POMBASE - RGD - UniProtKB - WB - Xenbase - ZFIN missing_objects: 57029 missing_subject_namespaces: - ENSEMBL - FB - HGNC - MGI - NCBIGene - POMBASE - RGD - UniProtKB - WB - Xenbase - ZFIN missing_subjects: 55089 total_number: 999988 uri: biolink:orthologous_to total_number: 999988 - categories: - biolink:GeneToPhenotypicFeatureAssociation missing: 5971 name: pombase_gene_to_phenotype_edges namespaces: - FYPO - PomBase node_types: - categories: - biolink:Gene missing: 4967 name: pombase_gene_nodes namespaces: - PomBase taxon: - NCBITaxon:4896 total_number: 4967 predicates: - missing_object_namespaces: - FYPO missing_objects: 5929 missing_subject_namespaces: - PomBase missing_subjects: 42 total_number: 86669 uri: biolink:has_phenotype total_number: 86669 - categories: - biolink:ChemicalToPathwayAssociation missing: 2034 name: reactome_chemical_to_pathway_edges namespaces: - CHEBI - REACT node_types: - categories: - biolink:Pathway missing: 8661 name: reactome_pathway_nodes namespaces: - REACT taxon: - NCBITaxon:10090 - NCBITaxon:10116 - NCBITaxon:44689 - NCBITaxon:4896 - NCBITaxon:4932 - NCBITaxon:6239 - NCBITaxon:7227 - NCBITaxon:7955 - NCBITaxon:8364 - NCBITaxon:9031 - NCBITaxon:9606 - NCBITaxon:9615 - NCBITaxon:9823 - NCBITaxon:9913 total_number: 8661 predicates: - missing_object_namespaces: [] missing_objects: 0 missing_subject_namespaces: - CHEBI missing_subjects: 2034 total_number: 44078 uri: biolink:participates_in total_number: 44078 - categories: - biolink:GeneToPathwayAssociation missing: 55743 name: reactome_gene_to_pathway_edges namespaces: - NCBIGene - REACT - UniProtKB node_types: - categories: - biolink:Pathway missing: 13425 name: reactome_pathway_nodes namespaces: - REACT taxon: - NCBITaxon:10090 - NCBITaxon:10116 - NCBITaxon:44689 - NCBITaxon:4896 - NCBITaxon:4932 - NCBITaxon:6239 - NCBITaxon:7227 - NCBITaxon:7955 - NCBITaxon:8364 - NCBITaxon:9031 - NCBITaxon:9606 - NCBITaxon:9615 - NCBITaxon:9823 - NCBITaxon:9913 total_number: 13425 predicates: - missing_object_namespaces: [] missing_objects: 0 missing_subject_namespaces: - NCBIGene - UniProtKB missing_subjects: 55743 total_number: 189787 uri: biolink:participates_in total_number: 189787 - categories: - biolink:PairwiseGeneToGeneInteraction missing: 104365 name: string_protein_links_edges namespaces: - HGNC - NCBIGene - UniProtKB node_types: - categories: - biolink:Gene missing: 0 name: hgnc_gene_nodes namespaces: - HGNC taxon: - NCBITaxon:9606 total_number: 865 - categories: - biolink:Gene missing: 0 name: ncbi_gene_nodes namespaces: - NCBIGene taxon: - NCBITaxon:227321 - NCBITaxon:9031 - NCBITaxon:9913 total_number: 1578 predicates: - missing_object_namespaces: - NCBIGene - UniProtKB missing_objects: 104365 missing_subject_namespaces: - NCBIGene - UniProtKB missing_subjects: 104365 total_number: 2654552 uri: biolink:interacts_with total_number: 2654552 - categories: - biolink:GeneToPhenotypicFeatureAssociation missing: 63 name: xenbase_gene_to_phenotype_edges namespaces: - XPO - Xenbase node_types: - categories: - biolink:Gene missing: 4 name: alliance_gene_nodes namespaces: - Xenbase taxon: - NCBITaxon:8355 - NCBITaxon:8364 total_number: 4 - categories: - biolink:PhenotypicQuality missing: 146 name: phenio_nodes namespaces: - XPO taxon: - missing taxon total_number: 146 predicates: - missing_object_namespaces: - XPO missing_objects: 2 missing_subject_namespaces: - Xenbase missing_subjects: 61 total_number: 275 uri: biolink:has_phenotype total_number: 275 - categories: - biolink:GeneToGeneHomologyAssociation missing: 15303 name: xenbase_non_entrez_orthologs_edges namespaces: - HGNC - MGI - OMIM - Xenbase - ZFIN node_types: - categories: - biolink:Gene missing: 26557 name: alliance_gene_nodes namespaces: - MGI - ZFIN taxon: - NCBITaxon:10090 - NCBITaxon:7955 - missing taxon total_number: 26557 - categories: - biolink:Gene missing: 12399 name: hgnc_gene_nodes namespaces: - HGNC taxon: - NCBITaxon:9606 total_number: 12399 predicates: - missing_object_namespaces: - MGI - OMIM - ZFIN missing_objects: 348 missing_subject_namespaces: - Xenbase missing_subjects: 14955 total_number: 44287 uri: biolink:orthologous_to total_number: 44287 - categories: - biolink:GeneToGeneHomologyAssociation missing: 44287 name: xenbase_orthologs_edges namespaces: - HGNC - NCBIGene - Xenbase node_types: - categories: - biolink:Gene missing: 14918 name: hgnc_gene_nodes namespaces: - HGNC taxon: - NCBITaxon:9606 - missing taxon total_number: 14918 predicates: - missing_object_namespaces: - NCBIGene missing_objects: 28688 missing_subject_namespaces: - Xenbase missing_subjects: 15599 total_number: 45104 uri: biolink:orthologous_to total_number: 45104 - categories: - biolink:GeneToPhenotypicFeatureAssociation missing: 1617 name: zfin_gene_to_phenotype_edges namespaces: - ZFIN - ZP node_types: - categories: - biolink:Gene missing: 431 name: alliance_gene_nodes namespaces: - ZFIN taxon: - NCBITaxon:7955 total_number: 431 predicates: - missing_object_namespaces: - ZP missing_objects: 1617 missing_subject_namespaces: [] missing_subjects: 0 total_number: 2827 uri: biolink:has_phenotype total_number: 2827 edges: - categories: - biolink:GeneToExpressionSiteAssociation missing: 0 name: alliance_gene_to_expression_edges namespaces: - EMAPA - FB - FBbt - GO - MGI - RGD - SGD - WB - WBbt - ZFA - ZFIN node_types: - categories: - biolink:Gene missing: 54355 name: alliance_gene_nodes namespaces: - FB - MGI - RGD - SGD - WB - ZFIN taxon: - NCBITaxon:10090 - NCBITaxon:10116 - NCBITaxon:559292 - NCBITaxon:6239 - NCBITaxon:7227 - NCBITaxon:7955 - missing taxon total_number: 54355 - categories: - biolink:AnatomicalEntity - biolink:Cell - biolink:CellularComponent - biolink:GrossAnatomicalStructure - biolink:MacromolecularComplexMixin - biolink:NamedThing missing: 13382 name: phenio_nodes namespaces: - EMAPA - FBbt - GO - WBbt - ZFA taxon: - missing taxon total_number: 13382 predicates: - missing_object_namespaces: [] missing_objects: 0 missing_subject_namespaces: [] missing_subjects: 0 total_number: 1794918 uri: biolink:expressed_in total_number: 1794918 - categories: - biolink:GeneToPhenotypicFeatureAssociation missing: 0 name: alliance_gene_to_phenotype_edges namespaces: - MGI - MP - RGD - WB - WBPhenotype node_types: - categories: - biolink:Gene missing: 19675 name: alliance_gene_nodes namespaces: - MGI - RGD - WB taxon: - NCBITaxon:10090 - NCBITaxon:10116 - NCBITaxon:6239 - missing taxon total_number: 19675 - categories: - biolink:PhenotypicQuality missing: 12267 name: phenio_nodes namespaces: - MP - WBPhenotype taxon: - missing taxon total_number: 12267 predicates: - missing_object_namespaces: [] missing_objects: 0 missing_subject_namespaces: [] missing_subjects: 0 total_number: 298582 uri: biolink:has_phenotype total_number: 298582 - categories: - null missing: 0 name: bgee_gene_to_expression_edges namespaces: - NCBIGene - UBERON node_types: - categories: - biolink:Gene missing: 31877 name: ncbi_gene_nodes namespaces: - NCBIGene taxon: - NCBITaxon:9823 - NCBITaxon:9913 total_number: 31877 - categories: - biolink:AnatomicalEntity - biolink:GrossAnatomicalStructure missing: 139 name: phenio_nodes namespaces: - UBERON taxon: - missing taxon total_number: 139 predicates: - missing_object_namespaces: [] missing_objects: 0 missing_subject_namespaces: [] missing_subjects: 0 total_number: 236565 uri: biolink:expressed_in total_number: 236565 - categories: - biolink:MacromolecularMachineToBiologicalProcessAssociation - biolink:MacromolecularMachineToCellularComponentAssociation - biolink:MacromolecularMachineToMolecularActivityAssociation missing: 0 name: goa_go_annotation_edges namespaces: - FB - GO - HGNC - MGI - PomBase - RGD - SGD - WB - ZFIN - dictyBase node_types: - categories: - biolink:Gene missing: 111374 name: alliance_gene_nodes namespaces: - FB - MGI - RGD - SGD - WB - ZFIN taxon: - NCBITaxon:10090 - NCBITaxon:10116 - NCBITaxon:559292 - NCBITaxon:6239 - NCBITaxon:7227 - NCBITaxon:7955 - missing taxon total_number: 111374 - categories: - biolink:Gene missing: 9490 name: dictybase_gene_nodes namespaces: - dictyBase taxon: - NCBITaxon:44689 total_number: 9490 - categories: - biolink:Gene missing: 19540 name: hgnc_gene_nodes namespaces: - HGNC taxon: - NCBITaxon:9606 - missing taxon total_number: 19540 - categories: - biolink:CellularComponent - biolink:MacromolecularComplexMixin - biolink:Occurrent - biolink:Pathway missing: 24406 name: phenio_nodes namespaces: - GO taxon: - missing taxon total_number: 24406 - categories: - biolink:Gene missing: 5131 name: pombase_gene_nodes namespaces: - PomBase taxon: - NCBITaxon:4896 total_number: 5131 predicates: - missing_object_namespaces: [] missing_objects: 0 missing_subject_namespaces: [] missing_subjects: 0 total_number: 139219 uri: biolink:active_in - missing_object_namespaces: [] missing_objects: 0 missing_subject_namespaces: [] missing_subjects: 0 total_number: 675641 uri: biolink:actively_involved_in - missing_object_namespaces: [] missing_objects: 0 missing_subject_namespaces: [] missing_subjects: 0 total_number: 9256 uri: biolink:acts_upstream_of - missing_object_namespaces: [] missing_objects: 0 missing_subject_namespaces: [] missing_subjects: 0 total_number: 159 uri: biolink:acts_upstream_of_negative_effect - missing_object_namespaces: [] missing_objects: 0 missing_subject_namespaces: [] missing_subjects: 0 total_number: 199805 uri: biolink:acts_upstream_of_or_within - missing_object_namespaces: [] missing_objects: 0 missing_subject_namespaces: [] missing_subjects: 0 total_number: 182 uri: biolink:acts_upstream_of_or_within_negative_effect - missing_object_namespaces: [] missing_objects: 0 missing_subject_namespaces: [] missing_subjects: 0 total_number: 436 uri: biolink:acts_upstream_of_or_within_positive_effect - missing_object_namespaces: [] missing_objects: 0 missing_subject_namespaces: [] missing_subjects: 0 total_number: 250 uri: biolink:acts_upstream_of_positive_effect - missing_object_namespaces: [] missing_objects: 0 missing_subject_namespaces: [] missing_subjects: 0 total_number: 4219 uri: biolink:colocalizes_with - missing_object_namespaces: [] missing_objects: 0 missing_subject_namespaces: [] missing_subjects: 0 total_number: 6843 uri: biolink:contributes_to - missing_object_namespaces: [] missing_objects: 0 missing_subject_namespaces: [] missing_subjects: 0 total_number: 780183 uri: biolink:enables - missing_object_namespaces: [] missing_objects: 0 missing_subject_namespaces: [] missing_subjects: 0 total_number: 484272 uri: biolink:located_in - missing_object_namespaces: [] missing_objects: 0 missing_subject_namespaces: [] missing_subjects: 0 total_number: 77598 uri: biolink:part_of total_number: 2378063 - categories: - biolink:DiseaseOrPhenotypicFeatureToGeneticInheritanceAssociation missing: 0 name: hpoa_disease_mode_of_inheritance_edges namespaces: - HGNC - HP - MONDO node_types: - categories: - biolink:Gene missing: 7 name: hgnc_gene_nodes namespaces: - HGNC taxon: - NCBITaxon:9606 total_number: 7 - categories: - biolink:Disease - biolink:GeneticInheritance missing: 8009 name: phenio_nodes namespaces: - HP - MONDO taxon: - missing taxon total_number: 8009 predicates: - missing_object_namespaces: [] missing_objects: 0 missing_subject_namespaces: [] missing_subjects: 0 total_number: 8469 uri: biolink:has_mode_of_inheritance total_number: 8469 - categories: - biolink:DiseaseToPhenotypicFeatureAssociation missing: 0 name: hpoa_disease_phenotype_edges namespaces: - HGNC - HP - MONDO node_types: - categories: - biolink:Gene missing: 8 name: hgnc_gene_nodes namespaces: - HGNC taxon: - NCBITaxon:9606 total_number: 8 - categories: - biolink:Disease - biolink:PhenotypicQuality missing: 16415 name: phenio_nodes namespaces: - HP - MONDO taxon: - missing taxon total_number: 16415 predicates: - missing_object_namespaces: [] missing_objects: 0 missing_subject_namespaces: [] missing_subjects: 0 total_number: 119623 uri: biolink:has_phenotype total_number: 119623 - categories: - biolink:GeneToPhenotypicFeatureAssociation missing: 0 name: hpoa_gene_to_phenotype_edges namespaces: - HGNC - HP node_types: - categories: - biolink:Gene missing: 4896 name: hgnc_gene_nodes namespaces: - HGNC taxon: - NCBITaxon:9606 total_number: 4896 - categories: - biolink:ClinicalModifier - biolink:GeneticInheritance - biolink:PhenotypicFeature - biolink:PhenotypicQuality missing: 9232 name: phenio_nodes namespaces: - HP taxon: - missing taxon total_number: 9232 predicates: - missing_object_namespaces: [] missing_objects: 0 missing_subject_namespaces: [] missing_subjects: 0 total_number: 267781 uri: biolink:has_phenotype total_number: 267781 - categories: - biolink:GeneToDiseaseAssociation missing: 0 name: omim_gene_to_disease_edges namespaces: - HGNC - MONDO node_types: - categories: - biolink:Gene missing: 4073 name: hgnc_gene_nodes namespaces: - HGNC taxon: - NCBITaxon:9606 total_number: 4172 - categories: - biolink:Disease missing: 5451 name: phenio_nodes namespaces: - MONDO taxon: - missing taxon total_number: 5456 predicates: - missing_object_namespaces: [] missing_objects: 0 missing_subject_namespaces: [] missing_subjects: 0 total_number: 5685 uri: biolink:gene_associated_with_condition - missing_object_namespaces: [] missing_objects: 0 missing_subject_namespaces: [] missing_subjects: 0 total_number: 704 uri: biolink:risk_affected_by total_number: 6389 - categories: - biolink:GeneToGeneHomologyAssociation missing: 0 name: panther_genome_orthologs_edges namespaces: - FB - HGNC - MGI - NCBIGene - RGD - SGD - WB - Xenbase - ZFIN - dictyBase node_types: - categories: - biolink:Gene missing: 15192 name: alliance_gene_nodes namespaces: - FB - MGI - RGD - SGD - WB - Xenbase - ZFIN taxon: - NCBITaxon:10090 - NCBITaxon:10116 - NCBITaxon:559292 - NCBITaxon:6239 - NCBITaxon:7227 - NCBITaxon:7955 - NCBITaxon:8364 - missing taxon total_number: 92557 - categories: - biolink:Gene missing: 5756 name: dictybase_gene_nodes namespaces: - dictyBase taxon: - NCBITaxon:44689 total_number: 5756 - categories: - biolink:Gene missing: 19080 name: hgnc_gene_nodes namespaces: - HGNC taxon: - NCBITaxon:9606 - missing taxon total_number: 19080 - categories: - biolink:Gene missing: 2018 name: ncbi_gene_nodes namespaces: - NCBIGene taxon: - NCBITaxon:9615 - NCBITaxon:9823 - NCBITaxon:9913 total_number: 32571 predicates: - missing_object_namespaces: [] missing_objects: 0 missing_subject_namespaces: [] missing_subjects: 0 total_number: 873975 uri: biolink:orthologous_to total_number: 873975 - categories: - null missing: 0 name: phenio_edges namespaces: - CHEBI - EMAPA - FBbt - GO - HP - MONDO - MP - MPATH - UBERON - WBPhenotype - WBbt - XPO - ZFA - ZP node_types: - categories: - biolink:AnatomicalEntity - biolink:BiologicalProcess - biolink:Cell - biolink:CellularComponent - biolink:ChemicalEntity - biolink:ChemicalSubstance - biolink:ClinicalModifier - biolink:Disease - biolink:GeneticInheritance - biolink:GrossAnatomicalStructure - biolink:MacromolecularComplexMixin - biolink:MolecularEntity - biolink:NamedThing - biolink:Occurrent - biolink:PathologicalEntityMixin - biolink:Pathway - biolink:PhenotypicFeature - biolink:PhenotypicQuality - biolink:Protein - biolink:RNAProduct - biolink:SmallMolecule - biolink:biological_role_mixin - biolink:chemical_role_mixin - biolink:is_metabolite_of missing: 117862 name: phenio_nodes namespaces: - CHEBI - EMAPA - FBbt - GO - HP - MONDO - MP - MPATH - UBERON - WBPhenotype - WBbt - XPO - ZFA - ZP taxon: - missing taxon total_number: 211206 predicates: - missing_object_namespaces: [] missing_objects: 0 missing_subject_namespaces: [] missing_subjects: 0 total_number: 11045 uri: biolink:affects - missing_object_namespaces: [] missing_objects: 0 missing_subject_namespaces: [] missing_subjects: 0 total_number: 1121 uri: biolink:associated_with - missing_object_namespaces: [] missing_objects: 0 missing_subject_namespaces: [] missing_subjects: 0 total_number: 485 uri: biolink:capable_of - missing_object_namespaces: [] missing_objects: 0 missing_subject_namespaces: [] missing_subjects: 0 total_number: 63 uri: biolink:caused_by - missing_object_namespaces: [] missing_objects: 0 missing_subject_namespaces: [] missing_subjects: 0 total_number: 20 uri: biolink:causes - missing_object_namespaces: [] missing_objects: 0 missing_subject_namespaces: [] missing_subjects: 0 total_number: 929 uri: biolink:coexists_with - missing_object_namespaces: [] missing_objects: 0 missing_subject_namespaces: [] missing_subjects: 0 total_number: 4245 uri: biolink:develops_from - missing_object_namespaces: [] missing_objects: 0 missing_subject_namespaces: [] missing_subjects: 0 total_number: 92 uri: biolink:disrupts - missing_object_namespaces: [] missing_objects: 0 missing_subject_namespaces: [] missing_subjects: 0 total_number: 2490 uri: biolink:has_attribute - missing_object_namespaces: [] missing_objects: 0 missing_subject_namespaces: [] missing_subjects: 0 total_number: 402 uri: biolink:has_input - missing_object_namespaces: [] missing_objects: 0 missing_subject_namespaces: [] missing_subjects: 0 total_number: 576 uri: biolink:has_output - missing_object_namespaces: [] missing_objects: 0 missing_subject_namespaces: [] missing_subjects: 0 total_number: 1600 uri: biolink:has_part - missing_object_namespaces: [] missing_objects: 0 missing_subject_namespaces: [] missing_subjects: 0 total_number: 368 uri: biolink:has_participant - missing_object_namespaces: [] missing_objects: 0 missing_subject_namespaces: [] missing_subjects: 0 total_number: 155 uri: biolink:has_phenotype - missing_object_namespaces: [] missing_objects: 0 missing_subject_namespaces: [] missing_subjects: 0 total_number: 12 uri: biolink:homologous_to - missing_object_namespaces: [] missing_objects: 0 missing_subject_namespaces: [] missing_subjects: 0 total_number: 579 uri: biolink:located_in - missing_object_namespaces: [] missing_objects: 0 missing_subject_namespaces: [] missing_subjects: 0 total_number: 10 uri: biolink:location_of - missing_object_namespaces: [] missing_objects: 0 missing_subject_namespaces: [] missing_subjects: 0 total_number: 356 uri: biolink:occurs_in - missing_object_namespaces: [] missing_objects: 0 missing_subject_namespaces: [] missing_subjects: 0 total_number: 5538 uri: biolink:overlaps - missing_object_namespaces: [] missing_objects: 0 missing_subject_namespaces: [] missing_subjects: 0 total_number: 34817 uri: biolink:part_of - missing_object_namespaces: [] missing_objects: 0 missing_subject_namespaces: [] missing_subjects: 0 total_number: 396 uri: biolink:participates_in - missing_object_namespaces: [] missing_objects: 0 missing_subject_namespaces: [] missing_subjects: 0 total_number: 34 uri: biolink:preceded_by - missing_object_namespaces: [] missing_objects: 0 missing_subject_namespaces: [] missing_subjects: 0 total_number: 3 uri: biolink:precedes - missing_object_namespaces: [] missing_objects: 0 missing_subject_namespaces: [] missing_subjects: 0 total_number: 52 uri: biolink:produced_by - missing_object_namespaces: [] missing_objects: 0 missing_subject_namespaces: [] missing_subjects: 0 total_number: 26 uri: biolink:produces - missing_object_namespaces: [] missing_objects: 0 missing_subject_namespaces: [] missing_subjects: 0 total_number: 3560 uri: biolink:regulates - missing_object_namespaces: [] missing_objects: 0 missing_subject_namespaces: [] missing_subjects: 0 total_number: 83706 uri: biolink:related_to - missing_object_namespaces: [] missing_objects: 0 missing_subject_namespaces: [] missing_subjects: 0 total_number: 347833 uri: biolink:subclass_of - missing_object_namespaces: [] missing_objects: 0 missing_subject_namespaces: [] missing_subjects: 0 total_number: 92 uri: biolink:temporally_related_to total_number: 500605 - categories: - biolink:ChemicalToPathwayAssociation missing: 0 name: reactome_chemical_to_pathway_edges namespaces: - CHEBI - REACT node_types: - categories: - biolink:ChemicalEntity - biolink:ChemicalSubstance - biolink:MolecularEntity - biolink:PhenotypicQuality - biolink:Protein - biolink:RNAProduct - biolink:SmallMolecule - biolink:biological_role_mixin - biolink:chemical_role_mixin missing: 360 name: phenio_nodes namespaces: - CHEBI taxon: - missing taxon total_number: 360 - categories: - biolink:Pathway missing: 12624 name: reactome_pathway_nodes namespaces: - REACT taxon: - NCBITaxon:10090 - NCBITaxon:10116 - NCBITaxon:44689 - NCBITaxon:4896 - NCBITaxon:4932 - NCBITaxon:6239 - NCBITaxon:7227 - NCBITaxon:7955 - NCBITaxon:8364 - NCBITaxon:9031 - NCBITaxon:9606 - NCBITaxon:9615 - NCBITaxon:9823 - NCBITaxon:9913 total_number: 12624 predicates: - missing_object_namespaces: [] missing_objects: 0 missing_subject_namespaces: [] missing_subjects: 0 total_number: 53976 uri: biolink:participates_in total_number: 53976 - categories: - biolink:GeneToPathwayAssociation missing: 0 name: reactome_gene_to_pathway_edges namespaces: - HGNC - NCBIGene - REACT node_types: - categories: - biolink:Gene missing: 10936 name: hgnc_gene_nodes namespaces: - HGNC taxon: - NCBITaxon:9606 - missing taxon total_number: 10936 - categories: - biolink:Gene missing: 141 name: ncbi_gene_nodes namespaces: - NCBIGene taxon: - NCBITaxon:9031 - NCBITaxon:9615 - NCBITaxon:9823 - NCBITaxon:9913 total_number: 141 - categories: - biolink:Pathway missing: 2349 name: reactome_pathway_nodes namespaces: - REACT taxon: - NCBITaxon:9031 - NCBITaxon:9606 - NCBITaxon:9615 - NCBITaxon:9823 - NCBITaxon:9913 total_number: 2349 predicates: - missing_object_namespaces: [] missing_objects: 0 missing_subject_namespaces: [] missing_subjects: 0 total_number: 49018 uri: biolink:participates_in total_number: 49018 - categories: - biolink:PairwiseGeneToGeneInteraction missing: 0 name: string_protein_links_edges namespaces: - HGNC - NCBIGene node_types: - categories: - biolink:Gene missing: 0 name: hgnc_gene_nodes namespaces: - HGNC taxon: - NCBITaxon:9606 - missing taxon total_number: 16338 - categories: - biolink:Gene missing: 0 name: ncbi_gene_nodes namespaces: - NCBIGene taxon: - NCBITaxon:227321 - NCBITaxon:9031 - NCBITaxon:9913 total_number: 811 predicates: - missing_object_namespaces: [] missing_objects: 0 missing_subject_namespaces: [] missing_subjects: 0 total_number: 492844 uri: biolink:interacts_with total_number: 492844 - categories: - biolink:GeneToPhenotypicFeatureAssociation missing: 0 name: xenbase_gene_to_phenotype_edges namespaces: - XPO - Xenbase node_types: - categories: - biolink:Gene missing: 517 name: alliance_gene_nodes namespaces: - Xenbase taxon: - NCBITaxon:8355 - NCBITaxon:8364 total_number: 517 - categories: - biolink:PhenotypicQuality missing: 481 name: phenio_nodes namespaces: - XPO taxon: - missing taxon total_number: 481 predicates: - missing_object_namespaces: [] missing_objects: 0 missing_subject_namespaces: [] missing_subjects: 0 total_number: 2317 uri: biolink:has_phenotype total_number: 2317 - categories: - biolink:GeneToPhenotypicFeatureAssociation missing: 0 name: zfin_gene_to_phenotype_edges namespaces: - ZFIN - ZP node_types: - categories: - biolink:Gene missing: 7262 name: alliance_gene_nodes namespaces: - ZFIN taxon: - NCBITaxon:7955 total_number: 7262 - categories: - biolink:PhenotypicQuality missing: 23517 name: phenio_nodes namespaces: - ZP taxon: - missing taxon total_number: 23517 predicates: - missing_object_namespaces: [] missing_objects: 0 missing_subject_namespaces: [] missing_subjects: 0 total_number: 138765 uri: biolink:has_phenotype total_number: 138765 nodes: - categories: - biolink:Gene name: alliance_gene_nodes namespaces: - FB - MGI - RGD - SGD - WB - Xenbase - ZFIN taxon: - NCBITaxon:10090 - NCBITaxon:10116 - NCBITaxon:559292 - NCBITaxon:6239 - NCBITaxon:7227 - NCBITaxon:7955 - NCBITaxon:8355 - NCBITaxon:8364 - missing taxon total_number: 309051 - categories: - biolink:Gene name: dictybase_gene_nodes namespaces: - dictyBase taxon: - NCBITaxon:44689 total_number: 14222 - categories: - biolink:Gene name: hgnc_gene_nodes namespaces: - HGNC taxon: - NCBITaxon:9606 - missing taxon total_number: 43547 - categories: - biolink:Gene name: ncbi_gene_nodes namespaces: - NCBIGene taxon: - NCBITaxon:227321 - NCBITaxon:9031 - NCBITaxon:9615 - NCBITaxon:9823 - NCBITaxon:9913 total_number: 194716 - categories: - biolink:AnatomicalEntity - biolink:BiologicalProcess - biolink:Cell - biolink:CellularComponent - biolink:ChemicalEntity - biolink:ChemicalSubstance - biolink:ClinicalModifier - biolink:Disease - biolink:GeneticInheritance - biolink:GrossAnatomicalStructure - biolink:MacromolecularComplexMixin - biolink:MolecularActivity - biolink:MolecularEntity - biolink:NamedThing - biolink:Occurrent - biolink:PathologicalEntityMixin - biolink:Pathway - biolink:PhenotypicFeature - biolink:PhenotypicQuality - biolink:Protein - biolink:RNAProduct - biolink:SmallMolecule - biolink:affects - biolink:affects_localization_of - biolink:biological_role_mixin - biolink:causes - biolink:chemical_role_mixin - biolink:close_match - biolink:coexists_with - biolink:contributes_to - biolink:derives_from - biolink:disease_has_basis_in - biolink:disease_has_location - biolink:has_attribute - biolink:has_part - biolink:increases_degradation_of - biolink:is_metabolite_of - biolink:located_in - biolink:manifestation_of - biolink:part_of - biolink:related_to - biolink:same_as - biolink:subclass_of - biolink:superclass_of - biolink:treated_by name: phenio_nodes namespaces: - CHEBI - EMAPA - FBbt - FYPO - GO - GOREL - HP - MESH - MONDO - MP - MPATH - OMIM - UBERON - WBPhenotype - WBbt - XPO - ZFA - ZP taxon: - missing taxon total_number: 227174 - categories: - biolink:Gene name: pombase_gene_nodes namespaces: - PomBase taxon: - NCBITaxon:4896 total_number: 5133 - categories: - biolink:Pathway name: reactome_pathway_nodes namespaces: - REACT taxon: - NCBITaxon:10090 - NCBITaxon:10116 - NCBITaxon:44689 - NCBITaxon:4896 - NCBITaxon:4932 - NCBITaxon:6239 - NCBITaxon:7227 - NCBITaxon:7955 - NCBITaxon:8364 - NCBITaxon:9031 - NCBITaxon:9606 - NCBITaxon:9615 - NCBITaxon:9823 - NCBITaxon:9913 total_number: 21427