dangling_edges: - categories: - biolink:GeneToExpressionSiteAssociation missing: 4433 name: alliance_gene_to_expression_edges namespaces: - EMAPA - FB - GO - MGI - RGD - ZFA - ZFIN node_types: - categories: - biolink:Gene missing: 14977 name: alliance_gene_nodes namespaces: - MGI - ZFIN taxon: - NCBITaxon:10090 - NCBITaxon:7955 total_number: 14977 - categories: - biolink:CellularComponent - biolink:OntologyClass missing: 50 name: phenio_nodes namespaces: - GO - ZFA taxon: - missing taxon total_number: 50 predicates: - missing_object_namespaces: - EMAPA - ZFA missing_objects: 4318 missing_subject_namespaces: - FB - MGI - RGD - ZFIN missing_subjects: 115 total_number: 741028 uri: biolink:expressed_in total_number: 741028 - categories: - biolink:GeneToPhenotypicFeatureAssociation missing: 29 name: alliance_gene_to_phenotype_edges namespaces: - MGI - MP - RGD node_types: - categories: - biolink:Gene missing: 100 name: alliance_gene_nodes namespaces: - MGI - RGD taxon: - NCBITaxon:10090 - NCBITaxon:10116 total_number: 100 predicates: - missing_object_namespaces: - MP missing_objects: 29 missing_subject_namespaces: [] missing_subjects: 0 total_number: 111 uri: biolink:has_phenotype total_number: 111 - categories: - biolink:ChemicalToDiseaseOrPhenotypicFeatureAssociation missing: 7660 name: ctd_chemical_to_disease_edges namespaces: - MESH - MONDO node_types: - categories: - biolink:Disease missing: 1684 name: phenio_nodes namespaces: - MONDO taxon: - missing taxon total_number: 1684 predicates: - missing_object_namespaces: - MESH missing_objects: 797 missing_subject_namespaces: - MESH missing_subjects: 6863 total_number: 37511 uri: biolink:treats total_number: 37511 - categories: - biolink:MacromolecularMachineToBiologicalProcessAssociation - biolink:MacromolecularMachineToCellularComponentAssociation - biolink:MacromolecularMachineToMolecularActivityAssociation missing: 8800 name: goa_go_annotation_edges namespaces: - AspGD - GO - PomBase node_types: - categories: - biolink:BiologicalProcess - biolink:CellularComponent - biolink:MolecularActivity - biolink:OntologyClass missing: 1370 name: phenio_nodes namespaces: - GO taxon: - missing taxon total_number: 1370 predicates: - missing_object_namespaces: [] missing_objects: 0 missing_subject_namespaces: - AspGD missing_subjects: 6703 total_number: 6703 uri: biolink:active_in - missing_object_namespaces: [] missing_objects: 0 missing_subject_namespaces: - AspGD - PomBase missing_subjects: 4716 total_number: 4717 uri: biolink:actively_involved_in - missing_object_namespaces: [] missing_objects: 0 missing_subject_namespaces: - AspGD missing_subjects: 1607 total_number: 3318 uri: biolink:acts_upstream_of_or_within - missing_object_namespaces: [] missing_objects: 0 missing_subject_namespaces: - AspGD missing_subjects: 18 total_number: 20 uri: biolink:colocalizes_with - missing_object_namespaces: [] missing_objects: 0 missing_subject_namespaces: - AspGD missing_subjects: 63 total_number: 70 uri: biolink:contributes_to - missing_object_namespaces: [] missing_objects: 0 missing_subject_namespaces: - AspGD - PomBase missing_subjects: 6029 total_number: 6672 uri: biolink:enables - missing_object_namespaces: [] missing_objects: 0 missing_subject_namespaces: - AspGD missing_subjects: 540 total_number: 747 uri: biolink:located_in - missing_object_namespaces: [] missing_objects: 0 missing_subject_namespaces: - AspGD - PomBase missing_subjects: 117 total_number: 139 uri: biolink:part_of total_number: 22386 - categories: - biolink:DiseaseOrPhenotypicFeatureToGeneticInheritanceAssociation missing: 218 name: hpoa_disease_mode_of_inheritance_edges namespaces: - DECIPHER - HP - OMIM node_types: - categories: - biolink:PhenotypicFeature missing: 9 name: phenio_nodes namespaces: - HP taxon: - missing taxon total_number: 9 predicates: - missing_object_namespaces: [] missing_objects: 0 missing_subject_namespaces: - DECIPHER - OMIM missing_subjects: 218 total_number: 221 uri: biolink:has_mode_of_inheritance total_number: 221 - categories: - biolink:DiseaseToPhenotypicFeatureAssociation missing: 4562 name: hpoa_disease_phenotype_edges namespaces: - DECIPHER - HP - MONDO - OMIM - ORPHA node_types: - categories: - biolink:Disease - biolink:PhenotypicFeature missing: 8382 name: phenio_nodes namespaces: - HP - MONDO taxon: - missing taxon total_number: 8382 predicates: - missing_object_namespaces: - HP missing_objects: 51 missing_subject_namespaces: - DECIPHER - OMIM - ORPHA missing_subjects: 4511 total_number: 118011 uri: biolink:has_phenotype total_number: 118011 - categories: - biolink:GeneToDiseaseAssociation missing: 5519 name: omim_gene_to_disease_edges namespaces: - MONDO - NCBIGene - OMIM node_types: - categories: - biolink:Disease missing: 6195 name: phenio_nodes namespaces: - MONDO taxon: - missing taxon total_number: 6195 predicates: - missing_object_namespaces: - OMIM missing_objects: 263 missing_subject_namespaces: - NCBIGene - OMIM missing_subjects: 4566 total_number: 6372 uri: biolink:gene_associated_with_condition - missing_object_namespaces: - OMIM missing_objects: 99 missing_subject_namespaces: - NCBIGene - OMIM missing_subjects: 878 total_number: 1052 uri: biolink:risk_affected_by total_number: 7424 - categories: - biolink:GeneToGeneHomologyAssociation missing: 27096 name: panther_ref_genome_orthologs_edges namespaces: - ENSEMBL - FB - HGNC - MGI - NCBIGene - POMBASE - RGD - SGD - WB - ZFIN - dictyBase node_types: - categories: - biolink:Gene missing: 53353 name: alliance_gene_nodes namespaces: - FB - MGI - RGD - SGD - WB - ZFIN taxon: - NCBITaxon:10090 - NCBITaxon:10116 - NCBITaxon:559292 - NCBITaxon:6239 - NCBITaxon:7227 - NCBITaxon:7955 - missing taxon total_number: 72740 - categories: - biolink:Gene missing: 16198 name: hgnc_gene_nodes namespaces: - HGNC taxon: - NCBITaxon:9606 - missing taxon total_number: 16198 - categories: - biolink:Gene missing: 25 name: ncbi_gene_nodes namespaces: - NCBIGene taxon: - NCBITaxon:9031 total_number: 26 predicates: - missing_object_namespaces: - ENSEMBL - FB - MGI - NCBIGene - POMBASE - RGD - WB - ZFIN - dictyBase missing_objects: 26085 missing_subject_namespaces: - ENSEMBL - FB - HGNC - MGI - NCBIGene - POMBASE - RGD - WB - ZFIN missing_subjects: 18794 total_number: 292925 uri: biolink:orthologous_to total_number: 292925 - categories: - biolink:GeneToPhenotypicFeatureAssociation missing: 30 name: pombase_gene_to_phenotype_edges namespaces: - FYPO - PomBase node_types: - categories: - biolink:Gene missing: 40 name: pombase_gene_nodes namespaces: - PomBase taxon: - NCBITaxon:4896 total_number: 40 predicates: - missing_object_namespaces: - FYPO missing_objects: 30 missing_subject_namespaces: [] missing_subjects: 0 total_number: 66 uri: biolink:has_phenotype total_number: 66 - categories: - biolink:ChemicalToPathwayAssociation missing: 1922 name: reactome_chemical_to_pathway_edges namespaces: - CHEBI - REACT node_types: - categories: - biolink:Pathway missing: 8245 name: reactome_pathway_nodes namespaces: - REACT taxon: - NCBITaxon:10090 - NCBITaxon:10116 - NCBITaxon:44689 - NCBITaxon:4896 - NCBITaxon:4932 - NCBITaxon:6239 - NCBITaxon:7227 - NCBITaxon:7955 - NCBITaxon:8364 - NCBITaxon:9031 - NCBITaxon:9606 - NCBITaxon:9615 - NCBITaxon:9823 - NCBITaxon:9913 total_number: 8245 predicates: - missing_object_namespaces: [] missing_objects: 0 missing_subject_namespaces: - CHEBI missing_subjects: 1922 total_number: 39247 uri: biolink:participates_in total_number: 39247 - categories: - biolink:GeneToPathwayAssociation missing: 39350 name: reactome_gene_to_pathway_edges namespaces: - NCBIGene - REACT node_types: - categories: - biolink:Pathway missing: 8565 name: reactome_pathway_nodes namespaces: - REACT taxon: - NCBITaxon:10090 - NCBITaxon:10116 - NCBITaxon:44689 - NCBITaxon:4896 - NCBITaxon:4932 - NCBITaxon:6239 - NCBITaxon:7227 - NCBITaxon:8364 - NCBITaxon:9031 - NCBITaxon:9606 total_number: 8565 predicates: - missing_object_namespaces: [] missing_objects: 0 missing_subject_namespaces: - NCBIGene missing_subjects: 39350 total_number: 141191 uri: biolink:participates_in total_number: 141191 - categories: - biolink:PairwiseGeneToGeneInteraction missing: 68262 name: string_protein_links_edges namespaces: - FB - MGI - NCBIGene - RGD - SGD - ZFIN node_types: - categories: - biolink:Gene missing: 0 name: alliance_gene_nodes namespaces: - FB - MGI - RGD - SGD - ZFIN taxon: - NCBITaxon:10090 - NCBITaxon:10116 - NCBITaxon:559292 - NCBITaxon:7227 - NCBITaxon:7955 total_number: 4096 predicates: - missing_object_namespaces: - NCBIGene missing_objects: 68262 missing_subject_namespaces: - NCBIGene missing_subjects: 68262 total_number: 1907954 uri: biolink:interacts_with total_number: 1907954 - categories: - biolink:GeneToPhenotypicFeatureAssociation missing: 550 name: xenbase_gene_to_phenotype_edges namespaces: - XPO - Xenbase node_types: - categories: - biolink:Gene missing: 517 name: alliance_gene_nodes namespaces: - Xenbase taxon: - NCBITaxon:8355 - NCBITaxon:8364 total_number: 517 predicates: - missing_object_namespaces: - XPO missing_objects: 489 missing_subject_namespaces: - Xenbase missing_subjects: 61 total_number: 2592 uri: biolink:has_phenotype total_number: 2592 - categories: - biolink:GeneToGeneHomologyAssociation missing: 55809 name: xenbase_orthologs_edges namespaces: - MGI - NCBIGene - Xenbase - ZFIN node_types: - categories: - biolink:Gene missing: 3396 name: alliance_gene_nodes namespaces: - MGI - ZFIN taxon: - NCBITaxon:10090 - NCBITaxon:7955 total_number: 3396 predicates: - missing_object_namespaces: - NCBIGene missing_objects: 40210 missing_subject_namespaces: - Xenbase missing_subjects: 15599 total_number: 45106 uri: biolink:orthologous_to total_number: 45106 - categories: - biolink:GeneToPhenotypicFeatureAssociation missing: 6 name: zfin_gene_to_phenotype_edges namespaces: - ZFIN - ZP node_types: - categories: - biolink:Gene missing: 11 name: alliance_gene_nodes namespaces: - ZFIN taxon: - NCBITaxon:7955 total_number: 11 predicates: - missing_object_namespaces: - ZP missing_objects: 6 missing_subject_namespaces: [] missing_subjects: 0 total_number: 29 uri: biolink:has_phenotype total_number: 29 edges: - categories: - biolink:GeneToExpressionSiteAssociation missing: 0 name: alliance_gene_to_expression_edges namespaces: - FB - FBbt - GO - RGD - SGD - WB - WBbt - ZFA - ZFIN node_types: - categories: - biolink:Gene missing: 39175 name: alliance_gene_nodes namespaces: - FB - RGD - SGD - WB - ZFIN taxon: - NCBITaxon:10116 - NCBITaxon:559292 - NCBITaxon:6239 - NCBITaxon:7227 - NCBITaxon:7955 - missing taxon total_number: 39175 - categories: - biolink:CellularComponent - biolink:OntologyClass missing: 9050 name: phenio_nodes namespaces: - FBbt - GO - WBbt - ZFA taxon: - missing taxon total_number: 9050 predicates: - missing_object_namespaces: [] missing_objects: 0 missing_subject_namespaces: [] missing_subjects: 0 total_number: 1050118 uri: biolink:expressed_in total_number: 1050118 - categories: - biolink:GeneToPhenotypicFeatureAssociation missing: 0 name: alliance_gene_to_phenotype_edges namespaces: - MGI - MP - RGD - WB - WBPhenotype node_types: - categories: - biolink:Gene missing: 19667 name: alliance_gene_nodes namespaces: - MGI - RGD - WB taxon: - NCBITaxon:10090 - NCBITaxon:10116 - NCBITaxon:6239 total_number: 19667 - categories: - biolink:OntologyClass missing: 12255 name: phenio_nodes namespaces: - MP - WBPhenotype taxon: - missing taxon total_number: 12255 predicates: - missing_object_namespaces: [] missing_objects: 0 missing_subject_namespaces: [] missing_subjects: 0 total_number: 297657 uri: biolink:has_phenotype total_number: 297657 - categories: - biolink:MacromolecularMachineToBiologicalProcessAssociation - biolink:MacromolecularMachineToCellularComponentAssociation - biolink:MacromolecularMachineToMolecularActivityAssociation missing: 0 name: goa_go_annotation_edges namespaces: - GO - PomBase node_types: - categories: - biolink:BiologicalProcess - biolink:CellularComponent - biolink:MolecularActivity missing: 4496 name: phenio_nodes namespaces: - GO taxon: - missing taxon total_number: 4496 - categories: - biolink:Gene missing: 5421 name: pombase_gene_nodes namespaces: - PomBase taxon: - NCBITaxon:4896 total_number: 5421 predicates: - missing_object_namespaces: [] missing_objects: 0 missing_subject_namespaces: [] missing_subjects: 0 total_number: 13283 uri: biolink:active_in - missing_object_namespaces: [] missing_objects: 0 missing_subject_namespaces: [] missing_subjects: 0 total_number: 10901 uri: biolink:actively_involved_in - missing_object_namespaces: [] missing_objects: 0 missing_subject_namespaces: [] missing_subjects: 0 total_number: 402 uri: biolink:contributes_to - missing_object_namespaces: [] missing_objects: 0 missing_subject_namespaces: [] missing_subjects: 0 total_number: 14218 uri: biolink:enables - missing_object_namespaces: [] missing_objects: 0 missing_subject_namespaces: [] missing_subjects: 0 total_number: 2 uri: biolink:located_in - missing_object_namespaces: [] missing_objects: 0 missing_subject_namespaces: [] missing_subjects: 0 total_number: 2946 uri: biolink:part_of total_number: 41752 - categories: - biolink:DiseaseOrPhenotypicFeatureToGeneticInheritanceAssociation missing: 0 name: hpoa_disease_mode_of_inheritance_edges namespaces: - HP - MONDO node_types: - categories: - biolink:Disease - biolink:PhenotypicFeature missing: 8033 name: phenio_nodes namespaces: - HP - MONDO taxon: - missing taxon total_number: 8033 predicates: - missing_object_namespaces: [] missing_objects: 0 missing_subject_namespaces: [] missing_subjects: 0 total_number: 8485 uri: biolink:has_mode_of_inheritance total_number: 8485 - categories: - biolink:DiseaseToPhenotypicFeatureAssociation missing: 0 name: hpoa_disease_phenotype_edges namespaces: - HP - MONDO node_types: - categories: - biolink:Disease - biolink:PhenotypicFeature missing: 16391 name: phenio_nodes namespaces: - HP - MONDO taxon: - missing taxon total_number: 16391 predicates: - missing_object_namespaces: [] missing_objects: 0 missing_subject_namespaces: [] missing_subjects: 0 total_number: 117103 uri: biolink:has_phenotype total_number: 117103 - categories: - biolink:GeneToDiseaseAssociation missing: 0 name: omim_gene_to_disease_edges namespaces: - MONDO node_types: - categories: - biolink:Disease missing: 22 name: phenio_nodes namespaces: - MONDO taxon: - missing taxon total_number: 26 predicates: - missing_object_namespaces: [] missing_objects: 0 missing_subject_namespaces: [] missing_subjects: 0 total_number: 5 uri: biolink:gene_associated_with_condition - missing_object_namespaces: [] missing_objects: 0 missing_subject_namespaces: [] missing_subjects: 0 total_number: 17 uri: biolink:risk_affected_by total_number: 22 - categories: - biolink:GeneToGeneHomologyAssociation missing: 0 name: panther_ref_genome_orthologs_edges namespaces: - FB - HGNC - MGI - NCBIGene - RGD - SGD - WB - ZFIN node_types: - categories: - biolink:Gene missing: 22021 name: alliance_gene_nodes namespaces: - FB - MGI - RGD - SGD - WB - ZFIN taxon: - NCBITaxon:10090 - NCBITaxon:10116 - NCBITaxon:559292 - NCBITaxon:6239 - NCBITaxon:7227 - NCBITaxon:7955 - missing taxon total_number: 81084 - categories: - biolink:Gene missing: 18803 name: hgnc_gene_nodes namespaces: - HGNC taxon: - NCBITaxon:9606 - missing taxon total_number: 18803 - categories: - biolink:Gene missing: 10 name: ncbi_gene_nodes namespaces: - NCBIGene taxon: - NCBITaxon:9031 total_number: 46 predicates: - missing_object_namespaces: [] missing_objects: 0 missing_subject_namespaces: [] missing_subjects: 0 total_number: 410374 uri: biolink:orthologous_to total_number: 410374 - categories: - null missing: 0 name: phenio_edges namespaces: - CHEBI - FBbt - FYPO - GO - HP - MONDO - MP - MPATH - UBERON - WBPhenotype - WBbt - ZFA - ZP node_types: - categories: - biolink:AnatomicalEntity - biolink:BiologicalProcess - biolink:CellularComponent - biolink:ChemicalSubstance - biolink:Disease - biolink:MolecularActivity - biolink:OntologyClass - biolink:PhenotypicFeature missing: 105238 name: phenio_nodes namespaces: - CHEBI - FBbt - FYPO - GO - HP - MONDO - MP - MPATH - UBERON - WBPhenotype - WBbt - ZFA - ZP taxon: - missing taxon total_number: 191781 predicates: - missing_object_namespaces: [] missing_objects: 0 missing_subject_namespaces: [] missing_subjects: 0 total_number: 12642 uri: biolink:affects - missing_object_namespaces: [] missing_objects: 0 missing_subject_namespaces: [] missing_subjects: 0 total_number: 2 uri: biolink:affects_localization_of - missing_object_namespaces: [] missing_objects: 0 missing_subject_namespaces: [] missing_subjects: 0 total_number: 115 uri: biolink:affects_transport_of - missing_object_namespaces: [] missing_objects: 0 missing_subject_namespaces: [] missing_subjects: 0 total_number: 1122 uri: biolink:associated_with - missing_object_namespaces: [] missing_objects: 0 missing_subject_namespaces: [] missing_subjects: 0 total_number: 488 uri: biolink:capable_of - missing_object_namespaces: [] missing_objects: 0 missing_subject_namespaces: [] missing_subjects: 0 total_number: 62 uri: biolink:caused_by - missing_object_namespaces: [] missing_objects: 0 missing_subject_namespaces: [] missing_subjects: 0 total_number: 20 uri: biolink:causes - missing_object_namespaces: [] missing_objects: 0 missing_subject_namespaces: [] missing_subjects: 0 total_number: 929 uri: biolink:coexists_with - missing_object_namespaces: [] missing_objects: 0 missing_subject_namespaces: [] missing_subjects: 0 total_number: 4083 uri: biolink:develops_from - missing_object_namespaces: [] missing_objects: 0 missing_subject_namespaces: [] missing_subjects: 0 total_number: 92 uri: biolink:disrupts - missing_object_namespaces: [] missing_objects: 0 missing_subject_namespaces: [] missing_subjects: 0 total_number: 3490 uri: biolink:has_attribute - missing_object_namespaces: [] missing_objects: 0 missing_subject_namespaces: [] missing_subjects: 0 total_number: 438 uri: biolink:has_input - missing_object_namespaces: [] missing_objects: 0 missing_subject_namespaces: [] missing_subjects: 0 total_number: 596 uri: biolink:has_output - missing_object_namespaces: [] missing_objects: 0 missing_subject_namespaces: [] missing_subjects: 0 total_number: 1947 uri: biolink:has_part - missing_object_namespaces: [] missing_objects: 0 missing_subject_namespaces: [] missing_subjects: 0 total_number: 385 uri: biolink:has_participant - missing_object_namespaces: [] missing_objects: 0 missing_subject_namespaces: [] missing_subjects: 0 total_number: 155 uri: biolink:has_phenotype - missing_object_namespaces: [] missing_objects: 0 missing_subject_namespaces: [] missing_subjects: 0 total_number: 12 uri: biolink:homologous_to - missing_object_namespaces: [] missing_objects: 0 missing_subject_namespaces: [] missing_subjects: 0 total_number: 3 uri: biolink:increases_degradation_of - missing_object_namespaces: [] missing_objects: 0 missing_subject_namespaces: [] missing_subjects: 0 total_number: 589 uri: biolink:located_in - missing_object_namespaces: [] missing_objects: 0 missing_subject_namespaces: [] missing_subjects: 0 total_number: 10 uri: biolink:location_of - missing_object_namespaces: [] missing_objects: 0 missing_subject_namespaces: [] missing_subjects: 0 total_number: 3124 uri: biolink:negatively_regulates - missing_object_namespaces: [] missing_objects: 0 missing_subject_namespaces: [] missing_subjects: 0 total_number: 363 uri: biolink:occurs_in - missing_object_namespaces: [] missing_objects: 0 missing_subject_namespaces: [] missing_subjects: 0 total_number: 5521 uri: biolink:overlaps - missing_object_namespaces: [] missing_objects: 0 missing_subject_namespaces: [] missing_subjects: 0 total_number: 34952 uri: biolink:part_of - missing_object_namespaces: [] missing_objects: 0 missing_subject_namespaces: [] missing_subjects: 0 total_number: 392 uri: biolink:participates_in - missing_object_namespaces: [] missing_objects: 0 missing_subject_namespaces: [] missing_subjects: 0 total_number: 3117 uri: biolink:positively_regulates - missing_object_namespaces: [] missing_objects: 0 missing_subject_namespaces: [] missing_subjects: 0 total_number: 34 uri: biolink:preceded_by - missing_object_namespaces: [] missing_objects: 0 missing_subject_namespaces: [] missing_subjects: 0 total_number: 3 uri: biolink:precedes - missing_object_namespaces: [] missing_objects: 0 missing_subject_namespaces: [] missing_subjects: 0 total_number: 52 uri: biolink:produced_by - missing_object_namespaces: [] missing_objects: 0 missing_subject_namespaces: [] missing_subjects: 0 total_number: 26 uri: biolink:produces - missing_object_namespaces: [] missing_objects: 0 missing_subject_namespaces: [] missing_subjects: 0 total_number: 3608 uri: biolink:regulates - missing_object_namespaces: [] missing_objects: 0 missing_subject_namespaces: [] missing_subjects: 0 total_number: 73385 uri: biolink:related_to - missing_object_namespaces: [] missing_objects: 0 missing_subject_namespaces: [] missing_subjects: 0 total_number: 318222 uri: biolink:subclass_of - missing_object_namespaces: [] missing_objects: 0 missing_subject_namespaces: [] missing_subjects: 0 total_number: 96 uri: biolink:temporally_related_to total_number: 470075 - categories: - biolink:GeneToPhenotypicFeatureAssociation missing: 0 name: pombase_gene_to_phenotype_edges namespaces: - FYPO - PomBase node_types: - categories: - biolink:OntologyClass missing: 5879 name: phenio_nodes namespaces: - FYPO taxon: - missing taxon total_number: 5879 - categories: - biolink:Gene missing: 5007 name: pombase_gene_nodes namespaces: - PomBase taxon: - NCBITaxon:4896 total_number: 5007 predicates: - missing_object_namespaces: [] missing_objects: 0 missing_subject_namespaces: [] missing_subjects: 0 total_number: 85924 uri: biolink:has_phenotype total_number: 85924 - categories: - biolink:ChemicalToPathwayAssociation missing: 0 name: reactome_chemical_to_pathway_edges namespaces: - CHEBI - REACT node_types: - categories: - biolink:ChemicalSubstance missing: 467 name: phenio_nodes namespaces: - CHEBI taxon: - missing taxon total_number: 467 - categories: - biolink:Pathway missing: 12777 name: reactome_pathway_nodes namespaces: - REACT taxon: - NCBITaxon:10090 - NCBITaxon:10116 - NCBITaxon:44689 - NCBITaxon:4896 - NCBITaxon:4932 - NCBITaxon:6239 - NCBITaxon:7227 - NCBITaxon:7955 - NCBITaxon:8364 - NCBITaxon:9031 - NCBITaxon:9606 - NCBITaxon:9615 - NCBITaxon:9823 - NCBITaxon:9913 total_number: 12777 predicates: - missing_object_namespaces: [] missing_objects: 0 missing_subject_namespaces: [] missing_subjects: 0 total_number: 58602 uri: biolink:participates_in total_number: 58602 - categories: - biolink:GeneToPathwayAssociation missing: 0 name: reactome_gene_to_pathway_edges namespaces: - FB - MGI - NCBIGene - REACT - SGD - Xenbase node_types: - categories: - biolink:Gene missing: 4954 name: alliance_gene_nodes namespaces: - FB - MGI - SGD - Xenbase taxon: - NCBITaxon:10090 - NCBITaxon:559292 - NCBITaxon:7227 - NCBITaxon:8364 total_number: 4954 - categories: - biolink:Gene missing: 11687 name: ncbi_gene_nodes namespaces: - NCBIGene taxon: - NCBITaxon:9031 - NCBITaxon:9615 - NCBITaxon:9823 - NCBITaxon:9913 total_number: 11687 - categories: - biolink:Pathway missing: 5788 name: reactome_pathway_nodes namespaces: - REACT taxon: - NCBITaxon:10090 - NCBITaxon:4932 - NCBITaxon:7227 - NCBITaxon:8364 - NCBITaxon:9031 - NCBITaxon:9615 - NCBITaxon:9823 - NCBITaxon:9913 total_number: 5788 predicates: - missing_object_namespaces: [] missing_objects: 0 missing_subject_namespaces: [] missing_subjects: 0 total_number: 58876 uri: biolink:participates_in total_number: 58876 - categories: - biolink:PairwiseGeneToGeneInteraction missing: 0 name: string_protein_links_edges namespaces: - FB - RGD - SGD - ZFIN node_types: - categories: - biolink:Gene missing: 0 name: alliance_gene_nodes namespaces: - FB - RGD - SGD - ZFIN taxon: - NCBITaxon:10116 - NCBITaxon:559292 - NCBITaxon:7227 - NCBITaxon:7955 total_number: 13834 predicates: - missing_object_namespaces: [] missing_objects: 0 missing_subject_namespaces: [] missing_subjects: 0 total_number: 315350 uri: biolink:interacts_with total_number: 315350 - categories: - biolink:GeneToPhenotypicFeatureAssociation missing: 0 name: zfin_gene_to_phenotype_edges namespaces: - ZFIN - ZP node_types: - categories: - biolink:Gene missing: 7220 name: alliance_gene_nodes namespaces: - ZFIN taxon: - NCBITaxon:7955 total_number: 7220 - categories: - biolink:OntologyClass missing: 23511 name: phenio_nodes namespaces: - ZP taxon: - missing taxon total_number: 23511 predicates: - missing_object_namespaces: [] missing_objects: 0 missing_subject_namespaces: [] missing_subjects: 0 total_number: 137646 uri: biolink:has_phenotype total_number: 137646 nodes: - categories: - biolink:Gene name: alliance_gene_nodes namespaces: - FB - MGI - RGD - SGD - WB - Xenbase - ZFIN taxon: - NCBITaxon:10090 - NCBITaxon:10116 - NCBITaxon:559292 - NCBITaxon:6239 - NCBITaxon:7227 - NCBITaxon:7955 - NCBITaxon:8355 - NCBITaxon:8364 - missing taxon total_number: 308119 - categories: - biolink:Gene name: hgnc_gene_nodes namespaces: - HGNC taxon: - NCBITaxon:9606 - missing taxon total_number: 43223 - categories: - biolink:Gene name: ncbi_gene_nodes namespaces: - NCBIGene taxon: - NCBITaxon:227321 - NCBITaxon:9031 - NCBITaxon:9615 - NCBITaxon:9823 - NCBITaxon:9913 total_number: 194724 - categories: - biolink:AnatomicalEntity - biolink:BiologicalProcess - biolink:CellularComponent - biolink:ChemicalSubstance - biolink:Disease - biolink:MolecularActivity - biolink:OntologyClass - biolink:PhenotypicFeature name: phenio_nodes namespaces: - CHEBI - EMAPA - FBbt - FYPO - GO - HP - MONDO - MP - MPATH - OMIM - UBERON - WBPhenotype - WBbt - ZFA - ZP taxon: - missing taxon total_number: 206869 - categories: - biolink:Gene name: pombase_gene_nodes namespaces: - PomBase taxon: - NCBITaxon:4896 total_number: 12763 - categories: - biolink:Pathway name: reactome_pathway_nodes namespaces: - REACT taxon: - NCBITaxon:10090 - NCBITaxon:10116 - NCBITaxon:44689 - NCBITaxon:4896 - NCBITaxon:4932 - NCBITaxon:6239 - NCBITaxon:7227 - NCBITaxon:7955 - NCBITaxon:8364 - NCBITaxon:9031 - NCBITaxon:9606 - NCBITaxon:9615 - NCBITaxon:9823 - NCBITaxon:9913 total_number: 21387